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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum

Predictor Summary:
  • cytosol 5
  • vacuole 1
  • mitochondrion 2
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum
Any Predictor:cytosol, mitochondrion, vacuole
BaCelLo:cytosol
EpiLoc:vacuole
iPSORT:mitochondrion
MultiLoc:cytosol
Plant-mPloc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
 extracellular: 20458513
endoplasmic reticulum: 21107622
nucleus: 21132161
extracellular: 25724908
endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913
msms PMID: 21132161 doi
B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
msms PMID: 21107622 doi
N Ahsan, T Nakamura, S Komatsu
National Institute of Crop Science, 2-1-18 Kannondai, Tsukuba, 305-8518, Japan.
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
msms PMID: 20458513 doi
S Komatsu, Y Kobayashi, K Nishizawa, Y Nanjo, K Furukawa
National Institute of Crop Science, Kannondai 2-1-18, Tsukuba, 305-8518, Japan. skomatsu@affrc.go.jp
msms PMID: 25724908 doi
VC Clarke, PC Loughlin, A Gavrin, C Chen, EM Brear, DA Day, PM Smith
From the ‡University of Sydney, School of Biological Sciences, Sydney Australia;, From the ‡University of Sydney, School of Biological Sciences, Sydney Australia; penny.smith@sydney.edu.au., From the ‡University of Sydney, School of Biological Sciences, Sydney Australia; §Flinders University, School of Biological Sciences, Adelaide Australia.
msms PMID: 27224218 doi
X Wang, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH10053 Soybean endoplasmic reticulum 94.61 94.61
KRH16725 Soybean cytosol 25.44 93.94
KRH62399 Soybean cytosol, endoplasmic reticulum 25.44 91.95
KRH62403 Soybean cytosol, endoplasmic reticulum 24.15 90.75
KRH10051 Soybean endoplasmic reticulum, nucleus 90.15 89.84
KRH57987 Soybean cytosol 27.08 89.53
KRH23269 Soybean endoplasmic reticulum 86.05 89.29
KRH13357 Soybean endoplasmic reticulum 21.57 76.03
KRH10050 Soybean endoplasmic reticulum 73.86 73.51
KRH44097 Soybean cytosol, endoplasmic reticulum 73.97 72.7
KRH44095 Soybean endoplasmic reticulum 73.04 71.94
KRH47069 Soybean endoplasmic reticulum 37.16 69.67
KRH47066 Soybean endoplasmic reticulum, nucleus 67.17 66.71
KRH47067 Soybean endoplasmic reticulum 67.41 66.55
KRH47522 Soybean endoplasmic reticulum, nucleus 67.41 66.47
KRH23265 Soybean endoplasmic reticulum, nucleus 67.41 66.4
KRH23266 Soybean cytosol 64.13 66.22
KRH44090 Soybean endoplasmic reticulum 66.71 66.16
KRH44093 Soybean endoplasmic reticulum 65.18 65.72
KRH44094 Soybean endoplasmic reticulum 66.71 65.63
KRH47525 Soybean endoplasmic reticulum 65.06 63.94
KRH35534 Soybean cytosol 32.59 62.05
KRH47064 Soybean endoplasmic reticulum 41.27 61.75
KRH68548 Soybean cytosol 61.78 61.42
TraesCS4A01G275800.1 Wheat cytosol 16.88 60.25
Os03t0700400-00 Rice cytosol, plasma membrane 8.68 58.73
KRH33939 Soybean cytosol, endoplasmic reticulum 59.32 58.5
TraesCS4A01G359800.1 Wheat cytosol 36.23 58.19
GSMUA_Achr1P22970_001 Banana cytosol 56.51 56.97
GSMUA_AchrUn_... Banana cytosol 52.17 56.76
GSMUA_AchrUn_... Banana cytosol 56.62 56.49
KRH44092 Soybean nucleus 56.39 56.13
GSMUA_Achr1P24370_001 Banana cytosol 55.45 55.84
KRG91271 Soybean cytosol 54.98 54.66
TraesCS6D01G122000.1 Wheat cytosol 19.7 54.19
GSMUA_Achr6P25110_001 Banana cytosol 50.29 54.03
TraesCS5A01G378800.2 Wheat cytosol 49.12 53.86
Os03t0700700-01 Rice cytosol, plasma membrane, plastid 55.33 53.82
Os03t0699700-01 Rice cytosol, plastid 54.16 53.53
Zm00001d033623_P003 Maize cytosol 54.4 53.52
GSMUA_Achr6P25090_001 Banana cytosol 52.52 53.46
TraesCS5B01G382600.1 Wheat cytosol 53.34 52.85
EER93612 Sorghum cytosol 53.58 52.77
EES04025 Sorghum cytosol 53.69 52.77
HORVU5Hr1G093770.1 Barley cytosol 52.99 52.38
Zm00001d013493_P001 Maize cytosol, extracellular, mitochondrion 54.4 52.31
Os03t0738600-01 Rice plasma membrane, plastid 53.34 52.3
EER93611 Sorghum cytosol 54.4 52.25
TraesCS5B01G382400.1 Wheat cytosol, golgi 52.4 52.22
HORVU5Hr1G093700.3 Barley cytosol, plasma membrane 52.87 52.2
TraesCS5A01G378700.1 Wheat cytosol 52.64 51.97
TraesCS5A01G378900.1 Wheat cytosol 52.64 51.97
TraesCS5B01G382300.1 Wheat cytosol, unclear 52.64 51.97
Zm00001d042541_P002 Maize cytosol 53.81 51.92
TraesCS4B01G037900.1 Wheat cytosol, golgi, nucleus, plastid, unclear 52.4 51.92
TraesCS5D01G388700.1 Wheat cytosol, golgi, unclear 52.4 51.74
Zm00001d033624_P001 Maize cytosol 53.69 51.63
TraesCS4B01G037700.3 Wheat cytosol, golgi 51.82 51.34
TraesCS4D01G035100.1 Wheat cytosol 52.76 51.25
KXG37783 Sorghum cytosol 53.58 51.18
TraesCS4D01G035200.1 Wheat cytosol 49.59 51.03
TraesCS4A01G275900.1 Wheat cytosol, unclear 52.52 51.03
TraesCS4B01G037800.1 Wheat cytosol 52.52 51.03
HORVU4Hr1G005920.1 Barley cytosol, plasma membrane 52.29 50.8
Zm00001d042540_P008 Maize cytosol 52.99 50.67
TraesCS5A01G379000.1 Wheat nucleus, unclear 45.72 50.65
EES04028 Sorghum cytosol 51.82 50.63
TraesCS5D01G388800.1 Wheat cytosol 52.99 50.39
GSMUA_Achr9P19250_001 Banana plasma membrane 56.04 50.26
TraesCS5D01G513100.1 Wheat cytosol 50.53 49.65
TraesCS3B01G602500.1 Wheat cytosol 51.23 49.6
TraesCS6B01G160400.1 Wheat mitochondrion 50.76 49.6
HORVU5Hr1G054200.1 Barley cytosol, mitochondrion 28.37 49.59
TraesCS6A01G132200.1 Wheat mitochondrion 50.53 49.37
TraesCS6A01G132500.1 Wheat mitochondrion 50.53 49.37
TraesCS3B01G605700.1 Wheat cytosol 50.88 49.04
HORVU5Hr1G117110.1 Barley cytosol 50.88 48.93
Os11t0575600-01 Rice mitochondrion 47.24 46.43
KRG88464 Soybean cytosol 24.74 46.27
GSMUA_Achr6P25080_001 Banana cytosol 41.97 46.19
TraesCS6B01G395700.1 Wheat cytosol 43.73 45.94
TraesCS6D01G121900.1 Wheat mitochondrion 22.74 43.4
KRG89889 Soybean cytosol, plastid 42.44 42.09
KRG89883 Soybean cytosol, plastid 42.2 41.91
KRH07345 Soybean cytosol, plastid 41.85 41.46
KRH66214 Soybean cytosol 42.09 41.45
KRH10882 Soybean cytosol 20.63 40.55
KRG89888 Soybean nucleus 42.91 40.53
KRH69027 Soybean plastid 42.79 40.51
KRH42646 Soybean plastid 43.73 40.5
KRH29669 Soybean plastid 42.67 40.4
KRG97300 Soybean plastid 42.32 40.16
KRH17965 Soybean plastid 43.14 40.09
KRH47615 Soybean nucleus 43.38 39.91
KRH06197 Soybean nucleus 43.14 39.91
KRH29668 Soybean nucleus 42.2 39.74
KRH18682 Soybean cytosol, mitochondrion 42.09 39.41
KRH24671 Soybean cytosol, plastid 41.74 38.95
KRH21441 Soybean cytosol 39.04 36.59
KRH50048 Soybean cytosol 37.4 35.05
KRH30640 Soybean cytosol 7.5 34.22
GSMUA_Achr6P25100_001 Banana cytosol 41.27 2.93
Protein Annotations
Gene3D:1.20.245.10Gene3D:2.60.60.20Gene3D:3.10.450.60Gene3D:4.10.372.10Gene3D:4.10.375.10MapMan:50.1.12
EntrezGene:547836ProteinID:ABX60409.1EMBL:ACUP02008458UniProt:B3TDK7EnsemblPlantsGene:GLYMA_13G347700GO:GO:0003674
GO:GO:0003824GO:GO:0005488GO:GO:0005515GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005737GO:GO:0006629GO:GO:0006631GO:GO:0006633GO:GO:0008150GO:GO:0008152
GO:GO:0009058GO:GO:0009987GO:GO:0016491GO:GO:0016702GO:GO:0031408GO:GO:0046872
GO:GO:0051213GO:GO:0055114InterPro:IPR001024InterPro:IPR013819InterPro:IPR027433EnsemblPlants:KRH23268
ProteinID:KRH23268ProteinID:KRH23268.1InterPro:LipOase_CInterPro:LipOase_CSInterPro:LipOase_C_sfInterPro:LipOase_Fe_BS
InterPro:LipOase_plantInterPro:Lipoxygenase_dom_3PFAM:PF00305PFAM:PF01477InterPro:PLAT/LH2_domInterPro:PLAT/LH2_dom_sf
PRINTS:PR00087PRINTS:PR00468ScanProsite:PS00081ScanProsite:PS00711PFscan:PS50095PFscan:PS51393
SMART:SM00308SUPFAM:SSF48484SUPFAM:SSF49723UniParc:UPI000178CA61SEG:seg:
Description
hypothetical protein
Coordinates
chr13:-:43773475..43780320
Molecular Weight (calculated)
96468.0 Da
IEP (calculated)
5.984
GRAVY (calculated)
-0.358
Length
853 amino acids
Sequence
(BLAST)
001: MFPFGQKGQK IKGTMVVMQK NVLDINSITS VGGIVDQGLG FIGSAVDALT FAATKISIQL ISATKADGGK GKIGKSTNLR GKITLPTLGA GEQAYDVNFE
101: WDSDFGIPGA FYIKNFMQNE FYLKSLILED IPNHGTIHFV CNSWVYNSKN YKTDRIFFAN NTYLPSETPA PLLKYREEEL KNVRGDGTGE RKEWDRIYDY
201: DVYNDLGNPD SGDKYARPVL GGSALPYPRR GRTGRGKTRK DPNSEKPSDF VYLPRDEAFG HLKSSDFLAY GIKSVSQDVL PVLTDAFDGN ILSLEFDNFA
301: EVHKLYEGGV TLPTNFLSKI APIPVIKEIF RTDGEQFLKY PPPKVMQVDK SAWMTDEEFA RETIAGLNPN VIKIIEEFPL SSKLDTQAYG DHTCIIAKEH
401: LEPNLGGLTV EQAIQNKKLF ILDHHDYLIP YLRKINANTT KTYATRTIFF LKDDGTLTPL AIELSKPHPQ GEEYGPVSEV YVPASEGVEA YIWLLAKAYV
501: VVNDACYHQI ISHWLSTHAI VEPFVIATNR QLSVVHPIYK LLFPHYRDTM NINSLARKAL VNADGIIEKT FLWGRYSMEM SAVIYKDWVF TDQALPNDLV
601: KRGVAVKDPS APHGVRLLIE DYPYASDGLE IWDAIKSWVQ EYVSFYYKSD EELQKDPELQ AWWKELVEVG HGDLKDKPWW QKMQTREELV EASAILIWIA
701: SALHAAVNFG QYPYGGLILN RPTISRRFMP EKGSPEYDAL AKNPEKEFLK TITGKKETLI DLTVIEILSR HASDEFYLGQ RDGGDYWTSD AGPLEAFKRF
801: GKKLEEIEKK LIEKNKDETL RNRYGPAKMP YTLLYPSSEE GLTFRGIPNS ISI
Best Arabidopsis Sequence Match ( AT1G17420.1 )
(BLAST)
001: MALAKELMGY PLITERSSLV SSASHFKKRT QSTQFSINPF DRRPRKTKSG VVAAISEDLV KTLRFSTTTG DRKSEEEEKA AVKFKVRAVV TVRNKNKEDL
101: KETLVKHLDA FADKIGRNIV LELISTQLDP KTKLPKKSNA AVLKDWSKKS KTKAERVHYT AEFTVDAAFG SPGAITVMNK HQKEFFLESI TIEGFALGPV
201: HFPCNSWVQS QKDHPDKRIF FTNQPYLPNE TPSGLRVLRE KELKNLRGDG SGVRKLSDRI YDFDVYNDLG NPDKSSELSR PKLGGKEVPY PRRCRTGRQS
301: TVSDKDAESR VEKPLPMYVP RDEQFEESKQ DTFAAGRLKA VLHHLIPSLK ASIVAEDFAD FGEIDRLYKE GLLLKLGFQD DIFKKFPLPK VVVDTLQEST
401: KGLLKYDTPK ILSKDKNAWL RDDEFARQAI AGINPVNIER VKTFPPVSNL DPKIYGPQHS ALTDDHIIGH LDGFSVQQAL EENRLYMLDY HDIFLPFLDR
501: INALDGRKAY ATRTIFFLTR LGTLKPVAIE LSLPPHGPKH RSKRVLTPPV DATSNWMWQL AKAHVSSNDA GVHQLVNHWL RTHACLEPFI LAAHRQLSAM
601: HPIFKLLDPH MRYTLEINAL ARQSLISADG VIEGGFTAGA YGMEMSAAAY KSSWRFDMEG LPADLIRRGM AIPDATQPHG LKLLIEDYPY ANDGLLLWSA
701: IQTWVRTYVE RYYPNPNLIK TDSELQSWYS ESINVGHADL RDADWWPELS TVDDLVSILT TLIWLASAQH AALNFGQYPY GGYVPNRPPL MRRLIPDESD
801: PEYASFISHP EKYYFSSMPS LAQTSKFMAV VDTLSTHSPD EEYIGERQQP SIWTGDAEIV EAFYGFAAEI GRIEKEIEKR NADPDRRNRC GAGVLPYELL
901: VPSSEPGVTC RGVPNSVSI
Arabidopsis Description
LOX3Lipoxygenase 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LNR3]
SUBAcon: [plastid,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.