Factsheet for GSMUA_Achr6P25090_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
plastid 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P25110_001	Banana	cytosol	91.77	96.85
GSMUA_AchrUn_...	Banana	cytosol	63.25	67.6
GSMUA_Achr6P25080_001	Banana	cytosol	62.05	67.1
GSMUA_AchrUn_...	Banana	cytosol	68.38	67.02
GSMUA_Achr1P24370_001	Banana	cytosol	66.23	65.53
CDY70916	Canola	cytosol	37.95	63.1
GSMUA_Achr9P19250_001	Banana	plasma membrane	70.88	62.46
GSMUA_Achr1P22970_001	Banana	cytosol	63.01	62.41
VIT_06s0004g01580.t01	Wine grape	cytosol	24.94	62.39
KRH35534	Soybean	cytosol	32.58	60.94
VIT_14s0128g00780.t01	Wine grape	cytosol	62.17	60.65
VIT_14s0128g00790.t01	Wine grape	cytosol	62.05	59.84
PGSC0003DMT400063654	Potato	cytosol	34.96	59.67
PGSC0003DMT400054145	Potato	cytosol	61.1	59.67
Solyc08g014000.2.1	Tomato	cytosol, nucleus, plastid	61.1	59.53
Solyc01g099160.2.1	Tomato	cytosol, extracellular, nucleus	61.1	59.4
Solyc08g029000.2.1	Tomato	cytosol, extracellular, nucleus	60.86	59.23
Bra021322.1-P	Field mustard	cytosol	60.14	58.81
PGSC0003DMT400028158	Potato	cytosol	60.38	58.7
AT1G55020.1	Thale cress	cytosol	59.79	58.32
KRH68548	Soybean	cytosol	59.55	58.16
PGSC0003DMT400063446	Potato	cytosol	55.73	58.08
KRH33939	Soybean	cytosol, endoplasmic reticulum	59.43	57.57
PGSC0003DMT400063461	Potato	cytosol	47.61	57.49
Solyc01g099200.2.1	Tomato	cytosol, plastid	57.04	56.84
Solyc01g099190.2.1	Tomato	cytosol, extracellular, nucleus, plastid	58.11	56.76
PGSC0003DMT400063452	Potato	cytosol	53.94	56.57
Solyc01g099180.2.1	Tomato	cytosol	57.64	56.56
PGSC0003DMT400063469	Potato	cytosol	56.8	56.47
KRG91271	Soybean	cytosol	57.52	56.18
Solyc01g099210.2.1	Tomato	cytosol	57.52	55.85
PGSC0003DMT400063477	Potato	cytosol	57.04	55.84
KRH23266	Soybean	cytosol	54.77	55.57
PGSC0003DMT400081370	Potato	cytosol	58.0	55.42
KRH23265	Soybean	endoplasmic reticulum, nucleus	56.92	55.08
Solyc09g075860.2.1	Tomato	cytosol, nucleus	57.28	54.73
KRH10050	Soybean	endoplasmic reticulum	55.61	54.38
VIT_05s0020g03170.t01	Wine grape	cytosol	56.8	54.34
KRH47067	Soybean	endoplasmic reticulum	55.73	54.05
KRH44090	Soybean	endoplasmic reticulum	55.37	53.95
AT3G22400.1	Thale cress	cytosol	56.56	53.5
KRH44093	Soybean	endoplasmic reticulum	53.94	53.43
KRH10051	Soybean	endoplasmic reticulum, nucleus	54.53	53.39
Solyc09g075870.1.1	Tomato	cytosol	54.18	53.16
CDY38326	Canola	cytosol	56.21	53.1
Bra039948.1-P	Field mustard	cytosol	56.21	53.1
CDY46325	Canola	cytosol	55.85	53.06
KRH47522	Soybean	endoplasmic reticulum, nucleus	54.65	52.95
KRH47066	Soybean	endoplasmic reticulum, nucleus	54.18	52.85
KRH44094	Soybean	endoplasmic reticulum	54.53	52.71
KRH23268	Soybean	endoplasmic reticulum	53.46	52.52
KRH47064	Soybean	endoplasmic reticulum	35.68	52.46
KRH44097	Soybean	cytosol, endoplasmic reticulum	54.3	52.42
KRH10053	Soybean	endoplasmic reticulum	53.34	52.4
Bra023829.1-P	Field mustard	cytosol	56.09	52.05
KRH44095	Soybean	endoplasmic reticulum	53.7	51.96
KRH16725	Soybean	cytosol	14.32	51.95
KRH47525	Soybean	endoplasmic reticulum	53.7	51.84
CDY64191	Canola	cytosol	55.85	51.6
KRH23269	Soybean	endoplasmic reticulum	50.36	51.34
KRG88464	Soybean	cytosol	27.92	51.32
KRH62399	Soybean	cytosol, endoplasmic reticulum	14.2	50.42
KRH47069	Soybean	endoplasmic reticulum	26.73	49.23
KRH44092	Soybean	nucleus	50.0	48.89
KRH57987	Soybean	cytosol	14.56	47.29
KRH62403	Soybean	cytosol, endoplasmic reticulum	12.77	47.14
GSMUA_Achr2P05850_001	Banana	cytosol	43.56	44.35
KRH13357	Soybean	endoplasmic reticulum	12.65	43.8
Solyc01g099170.2.1	Tomato	cytosol, mitochondrion	26.01	42.66
CDY43490	Canola	cytosol, plasma membrane	60.14	41.9
Solyc01g099150.2.1	Tomato	nucleus	42.84	41.65
GSMUA_Achr8P22700_001	Banana	plastid	40.45	39.98
GSMUA_Achr3P07870_001	Banana	plastid	40.57	38.68
GSMUA_Achr10P...	Banana	cytosol	40.45	38.52
GSMUA_Achr9P16020_001	Banana	plastid	39.98	38.24
GSMUA_Achr3P11780_001	Banana	plastid	37.71	37.35
GSMUA_Achr9P12470_001	Banana	plastid	37.11	36.89
GSMUA_Achr6P28450_001	Banana	plastid	37.71	36.32
GSMUA_Achr6P25100_001	Banana	cytosol	58.71	4.1

Protein Annotations

Gene3D:1.20.245.10	Gene3D:2.60.60.20	Gene3D:3.10.450.60	Gene3D:4.10.372.10	Gene3D:4.10.375.10	MapMan:50.1.12
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0006629	GO:GO:0006633
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016491	GO:GO:0016702
GO:GO:0031408	GO:GO:0046872	GO:GO:0051213	GO:GO:0055114	EnsemblPlantsGene:GSMUA_Achr6G25090_001	EnsemblPlants:GSMUA_Achr6P25090_001
EnsemblPlants:GSMUA_Achr6T25090_001	InterPro:IPR001024	InterPro:IPR013819	InterPro:IPR027433	InterPro:LipOase	InterPro:LipOase_C
InterPro:LipOase_CS	InterPro:LipOase_C_sf	InterPro:LipOase_plant	InterPro:Lipoxygenase_dom_3	UniProt:M0TA05	PFAM:PF00305
PFAM:PF01477	InterPro:PLAT/LH2_dom	InterPro:PLAT/LH2_dom_sf	PRINTS:PR00087	PRINTS:PR00468	ScanProsite:PS00081
PFscan:PS50095	PFscan:PS51393	PANTHER:PTHR11771	PANTHER:PTHR11771:SF53	SMART:SM00308	SUPFAM:SSF48484
SUPFAM:SSF49723	UniParc:UPI000295B6B6	:	:	:	:

Description

Lipoxygenase 1 [Source:GMGC_GENE;Acc:GSMUA_Achr6G25090_001]

Coordinates

chr6:+:26061170..26064679

Molecular Weight (calculated)

94119.3 Da

IEP (calculated)

6.517

GRAVY (calculated)

-0.252

Length

838 amino acids

Sequence
(BLAST)

001: MLCVNKYHLR CNRSHCNGVQ VKGTVVLMPK NVLDFNDLAG NVIDGLFDIL GQNVTFQLVS ATVGDPNNGN RGVVGSPASL QYLGRLPSLA AGESRFSVTF
101: QWEENKGIPG AVIVKNKHAT QFFLKTLTLD NFPGKGRIHF VCNSWVYPAN NYRYDRIFFA NTTYLPGATP APLKPYREDE LRHLRGDDVT SELQEWDRVY
201: GYAVYNDLGT PDDANLVRPI LGGSAVYPYP RRGKTNRPMT RKDPNTESRL GTLNTLNIYV PRDERFGHVK MGDFLTYGIK AVVNGLLPVL DAIVNVTPFE
301: FDSFEDIMRL YEEGIPVPYV PLFDELRQSI PFEMVKEVLR VEGGQRLLKL PKPQIIKFDK SAWRTDEEFA REMVAGVHPV LIKLLKVFPP VSELDPNKYG
401: NQNSTITAAH IEANLDGLTV DEALGSNRLF ILDHHDVFMP YIARINSTAH KAYATRTLLF LKADSTLKPL AIELSLPHPD GEQYGAVSKV YSASENGVDG
501: SLWQLAKAYV GVMDVGVHQL VSHWLGTHAI LEPFIIATNR HLSVVHPINK LLTPHYRDTM NINALARQSL ISADGILEKT SVQGKFSLEY SSWVYKNHWN
601: FVDQALPDDL VKRGVAVRDQ NGELSLLIKD YPYAEDGLQI WKAIETWVTE YCTIYYPSDD ALRADAELQA WWKEMRDSCT IIIWLASAFH AVINFGQYPY
701: GGYVPNRPTI SRRLVPEPGT PEHDLLETNP DKVFLRTISS QYQTIIGVSL LEILSTHSSD EVYLGQRDTP EWTTDQKALE AFQRFGKALN SIEEEINKKN
801: ADPSLKNRNG PAKMPFTLLF PSSEVGITGK GIPNSVSI

Best Arabidopsis Sequence Match ( AT1G55020.1 )
(BLAST)

001: MFGELRDLLT GGGNETTTKK VKGTVVLMKK NVLDFNDFNA SFLDRLHEFL GNKITLRLVS SDVTDSENGS KGKLGKAAHL EDWITTITSL TAGESAFKVT
101: FDYETDFGYP GAFLIRNSHF SEFLLKSLTL EDVPGHGRVH YICNSWIYPA KHYTTDRVFF SNKTYLPHET PATLLKYREE ELVSLRGTGE GELKEWDRVY
201: DYAYYNDLGV PPKNPRPVLG GTQEYPYPRR GRTGRKPTKE DPQTESRLPI TSSLDIYVPR DERFGHLKMS DFLAYALKAI AQFIQPALEA VFDDTPKEFD
301: SFEDVLKIYE EGIDLPNQAL IDSIVKNIPL EMLKEIFRTD GQKFLKFPVP QVIKEDKTAW RTDEEFAREM LAGLNPVVIQ LLKEFPPKSK LDSESYGNQN
401: STITKSHIEH NLDGLTVEEA LEKERLFILD HHDTLMPYLG RVNTTTTKTY ASRTLLFLKD DGTLKPLVIE LSLPHPNGDK FGAVSEVYTP GEGVYDSLWQ
501: LAKAFVGVND SGNHQLISHW MQTHASIEPF VIATNRQLSV LHPVFKLLEP HFRDTMNINA LARQILINGG GIFEITVFPS KYAMEMSSFI YKNHWTFPDQ
601: ALPAELKKRG MAVEDPEAPH GLRLRIKDYP YAVDGLEVWY AIESWVRDYI FLFYKIEEDI QTDTELQAWW KEVREEGHGD KKSEPWWPKM QTREELVESC
701: TIIIWVASAL HAAVNFGQYP VAGYLPNRPT ISRQYMPKEN TPEFEELEKN PDKVFLKTIT AQLQTLLGIS LIEILSTHSS DEVYLGQRDS KEWAAEKEAL
801: EAFEKFGEKV KEIEKNIDER NDDETLKNRT GLVKMPYTLL FPSSEGGVTG RGIPNSVSI

Arabidopsis Description

LOX1Linoleate 9S-lipoxygenase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q06327]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.