Factsheet for Solyc08g029000.2.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, nucleus, cytosol

Predictor Summary:

cytosol 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

extracellular: 22364583
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22364583 doi

P Shah, AL Powell, R Orlando, C Bergmann, G Gutierrez-Sanchez

Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia, United States.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400028158	Potato	cytosol	96.98	96.87
Solyc01g099160.2.1	Tomato	cytosol, extracellular, nucleus	81.88	81.79
Solyc08g014000.2.1	Tomato	cytosol, nucleus, plastid	78.28	78.37
Solyc01g099180.2.1	Tomato	cytosol	76.42	77.05
VIT_14s0128g00780.t01	Wine grape	cytosol	76.42	76.6
Solyc01g099190.2.1	Tomato	cytosol, extracellular, nucleus, plastid	75.38	75.64
VIT_14s0128g00790.t01	Wine grape	cytosol	75.61	74.91
CDY70916	Canola	cytosol	43.09	73.61
VIT_06s0004g01580.t01	Wine grape	cytosol	27.87	71.64
KRH68548	Soybean	cytosol	71.08	71.33
Bra021322.1-P	Field mustard	cytosol	69.45	69.78
KRH33939	Soybean	cytosol, endoplasmic reticulum	69.22	68.9
Solyc09g075860.2.1	Tomato	cytosol, nucleus	70.15	68.87
Solyc01g099200.2.1	Tomato	cytosol, plastid	67.25	68.85
AT1G55020.1	Thale cress	cytosol	68.06	68.22
GSMUA_Achr1P22970_001	Banana	cytosol	66.67	67.85
Solyc01g099210.2.1	Tomato	cytosol	66.78	66.63
GSMUA_AchrUn_...	Banana	cytosol	64.34	64.8
Solyc09g075870.1.1	Tomato	cytosol	63.65	64.17
TraesCS4A01G275800.1	Wheat	cytosol	17.77	64.02
GSMUA_AchrUn_...	Banana	cytosol	57.84	63.52
TraesCS6D01G122000.1	Wheat	cytosol	22.65	62.9
GSMUA_Achr1P24370_001	Banana	cytosol	61.67	62.69
TraesCS4A01G359800.1	Wheat	cytosol	38.33	62.15
Os03t0700400-00	Rice	cytosol, plasma membrane	9.06	61.9
GSMUA_Achr9P19250_001	Banana	plasma membrane	67.83	61.41
GSMUA_Achr6P25110_001	Banana	cytosol	56.33	61.08
GSMUA_Achr6P25090_001	Banana	cytosol	59.23	60.86
EER93612	Sorghum	cytosol	60.98	60.62
TraesCS5A01G378800.2	Wheat	cytosol	54.7	60.54
Zm00001d033623_P003	Maize	cytosol	60.86	60.44
Os03t0700700-01	Rice	cytosol, plasma membrane, plastid	61.09	59.98
EER93611	Sorghum	cytosol	61.32	59.46
TraesCS4A01G275900.1	Wheat	cytosol, unclear	60.39	59.23
TraesCS4B01G037800.1	Wheat	cytosol	60.28	59.11
TraesCS4D01G035100.1	Wheat	cytosol	60.28	59.11
Zm00001d013493_P001	Maize	cytosol, extracellular, mitochondrion	60.74	58.96
TraesCS5B01G382400.1	Wheat	cytosol, golgi	58.54	58.88
HORVU4Hr1G005920.1	Barley	cytosol, plasma membrane	59.93	58.77
Solyc01g099170.2.1	Tomato	cytosol, mitochondrion	34.84	58.71
TraesCS5B01G382300.1	Wheat	cytosol, unclear	58.77	58.56
Os03t0699700-01	Rice	cytosol, plastid	58.65	58.52
TraesCS4D01G035200.1	Wheat	cytosol	56.21	58.38
TraesCS4B01G037900.1	Wheat	cytosol, golgi, nucleus, plastid, unclear	58.19	58.19
Zm00001d033624_P001	Maize	cytosol	59.93	58.17
TraesCS5D01G388700.1	Wheat	cytosol, golgi, unclear	58.3	58.1
TraesCS4B01G037700.3	Wheat	cytosol, golgi	58.07	58.07
TraesCS5A01G378700.1	Wheat	cytosol	58.19	57.99
TraesCS5B01G382600.1	Wheat	cytosol	57.96	57.96
HORVU5Hr1G093770.1	Barley	cytosol	58.07	57.94
TraesCS5A01G378900.1	Wheat	cytosol	57.96	57.75
HORVU5Hr1G093700.3	Barley	cytosol, plasma membrane	57.96	57.75
EES04025	Sorghum	cytosol	57.96	57.49
Os03t0738600-01	Rice	plasma membrane, plastid	57.72	57.13
EES04028	Sorghum	cytosol	57.38	56.59
KXG37783	Sorghum	cytosol	58.54	56.44
Solyc01g099150.2.1	Tomato	nucleus	56.45	56.38
Zm00001d042541_P002	Maize	cytosol	57.72	56.22
TraesCS3B01G602500.1	Wheat	cytosol	57.49	56.19
TraesCS6A01G132500.1	Wheat	mitochondrion	56.45	55.67
TraesCS6A01G132200.1	Wheat	mitochondrion	56.45	55.67
TraesCS5D01G388800.1	Wheat	cytosol	57.96	55.63
TraesCS5A01G379000.1	Wheat	nucleus, unclear	49.71	55.58
TraesCS6B01G160400.1	Wheat	mitochondrion	56.33	55.56
TraesCS3B01G605700.1	Wheat	cytosol	56.91	55.37
Zm00001d042540_P008	Maize	cytosol	57.14	55.16
TraesCS5D01G513100.1	Wheat	cytosol	55.52	55.07
GSMUA_Achr6P25080_001	Banana	cytosol	49.13	54.58
HORVU5Hr1G117110.1	Barley	cytosol	55.98	54.34
HORVU5Hr1G054200.1	Barley	cytosol, mitochondrion	30.31	53.48
Os11t0575600-01	Rice	mitochondrion	52.26	51.84
TraesCS6B01G395700.1	Wheat	cytosol	47.27	50.12
CDY43490	Canola	cytosol, plasma membrane	69.11	49.46
Solyc01g009680.2.1	Tomato	plastid	25.09	48.76
Solyc09g055900.2.1	Tomato	cytosol	26.02	48.48
TraesCS6D01G121900.1	Wheat	mitochondrion	24.27	46.76
Solyc03g122340.2.1	Tomato	cytosol	44.13	41.85
Solyc01g006540.2.1	Tomato	plastid	42.39	40.74
Solyc12g011040.1.1	Tomato	nucleus, plastid	41.93	40.47
Solyc01g006560.2.1	Tomato	plastid	42.16	40.24
Solyc05g014790.2.1	Tomato	plastid	42.51	40.18
Solyc09g055890.2.1	Tomato	cytosol	14.75	34.23
GSMUA_Achr6P25100_001	Banana	cytosol	47.97	3.44

Protein Annotations

Gene3D:1.20.245.10	Gene3D:2.60.60.20	Gene3D:3.10.450.60	Gene3D:4.10.372.10	Gene3D:4.10.375.10	MapMan:50.1.12
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0006629	GO:GO:0006633
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016491	GO:GO:0016702
GO:GO:0031408	GO:GO:0046872	GO:GO:0051213	GO:GO:0055114	InterPro:IPR001024	InterPro:IPR013819
InterPro:IPR027433	UniProt:K4CJW3	InterPro:LipOase	InterPro:LipOase_C	InterPro:LipOase_CS	InterPro:LipOase_C_sf
InterPro:LipOase_Fe_BS	InterPro:LipOase_plant	InterPro:Lipoxygenase_dom_3	PFAM:PF00305	PFAM:PF01477	InterPro:PLAT/LH2_dom
InterPro:PLAT/LH2_dom_sf	PRINTS:PR00087	PRINTS:PR00468	ScanProsite:PS00081	ScanProsite:PS00711	PFscan:PS50095
PFscan:PS51393	PANTHER:PTHR11771	PANTHER:PTHR11771:SF53	SMART:SM00308	SUPFAM:SSF48484	SUPFAM:SSF49723
EnsemblPlantsGene:Solyc08g029000.2	EnsemblPlants:Solyc08g029000.2.1	UniParc:UPI000276BE84	:	:	:

Description

Lipoxygenase [Source:UniProtKB/TrEMBL;Acc:K4CJW3]

Coordinates

chr8:-:38906886..38910679

Molecular Weight (calculated)

97679.4 Da

IEP (calculated)

5.568

GRAVY (calculated)

-0.367

Length

861 amino acids

Sequence
(BLAST)

001: MLLEKIVEVI SGKSENVKKV KGTVVLMKKN VLDFNDVNAS LLDGVLEFLG KRVSLQLISA VHADPGNTLQ GKRSNPAYLE KWLTTGTSLV AGESAFDVTF
101: DWDDDIGVPG AFIINNFHFN EFYLKSLTLE DVPNHGSVHF VCNSWVYPAK RYKSERIFFA NQAYLPGETP EPLRNYREKE LVNLRGDGNG KLEEWDRVYD
201: YALYNDLGDP EKGKQYARTI LGGSAEFPYP RRGRTGRKPT KADPKSESRI PLLMSLDIYV PRDERFGHIK LSDFLTYALK SIVQFLIPEF QALFDSTPDE
301: FDSFEDVMKL YEGGIKLPQG PFLKALTDSI PLEILKEIIR TDGEGKFKFP TPQVLQEDKS SWRTDEEFAR EMLAGVNPVI ISRLQEFPPK SELDPEVYGN
401: QNSTITKEHI ENTLDGLTID DAIKTNRLYI LNHHDILMPY VRRINTTNTK LYASRTLLFL QDDGTMKPVA IELSLPHPDG DHLGAVSKVY TPANQGVEGS
501: IWQLAKAYVA VNDSGVHQLI SHWLNTHAAI EPFVIATNRQ LSVLHPIHKL LHPHFRDTMN INALARQILI NAGGVLEMTV FPAKYAMEMS AVVYKSWVFP
601: EQALPADLIK RGVAVEDSSS PHGVRLLIQD YPYAVDGLQI WSAIKSWVTE YCNFYYKSDE SLLKDNELQA WWKELREEGH GDKKDEPWWP KMQIRQELID
701: SCTIIIWIAS ALHAAVNFGQ YPYAGYLPNR PTLSRRFMPE PGTPEYEELK TNPDKAYLKT ITPQLQTLLG ISLIEILSRH ASDEIYLGQR DSSEWTKDQE
801: SIAAFERFGK KLSEIEDQII QMNGDEQWKN RSGPVKVPYT LLFPTSEQGL TGKGIPNSVS I

Best Arabidopsis Sequence Match ( AT1G55020.1 )
(BLAST)

001: MFGELRDLLT GGGNETTTKK VKGTVVLMKK NVLDFNDFNA SFLDRLHEFL GNKITLRLVS SDVTDSENGS KGKLGKAAHL EDWITTITSL TAGESAFKVT
101: FDYETDFGYP GAFLIRNSHF SEFLLKSLTL EDVPGHGRVH YICNSWIYPA KHYTTDRVFF SNKTYLPHET PATLLKYREE ELVSLRGTGE GELKEWDRVY
201: DYAYYNDLGV PPKNPRPVLG GTQEYPYPRR GRTGRKPTKE DPQTESRLPI TSSLDIYVPR DERFGHLKMS DFLAYALKAI AQFIQPALEA VFDDTPKEFD
301: SFEDVLKIYE EGIDLPNQAL IDSIVKNIPL EMLKEIFRTD GQKFLKFPVP QVIKEDKTAW RTDEEFAREM LAGLNPVVIQ LLKEFPPKSK LDSESYGNQN
401: STITKSHIEH NLDGLTVEEA LEKERLFILD HHDTLMPYLG RVNTTTTKTY ASRTLLFLKD DGTLKPLVIE LSLPHPNGDK FGAVSEVYTP GEGVYDSLWQ
501: LAKAFVGVND SGNHQLISHW MQTHASIEPF VIATNRQLSV LHPVFKLLEP HFRDTMNINA LARQILINGG GIFEITVFPS KYAMEMSSFI YKNHWTFPDQ
601: ALPAELKKRG MAVEDPEAPH GLRLRIKDYP YAVDGLEVWY AIESWVRDYI FLFYKIEEDI QTDTELQAWW KEVREEGHGD KKSEPWWPKM QTREELVESC
701: TIIIWVASAL HAAVNFGQYP VAGYLPNRPT ISRQYMPKEN TPEFEELEKN PDKVFLKTIT AQLQTLLGIS LIEILSTHSS DEVYLGQRDS KEWAAEKEAL
801: EAFEKFGEKV KEIEKNIDER NDDETLKNRT GLVKMPYTLL FPSSEGGVTG RGIPNSVSI

Arabidopsis Description

LOX1Linoleate 9S-lipoxygenase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q06327]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.