Factsheet for AT1G55020.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY70916	Canola	cytosol	54.48	92.86
Bra021322.1-P	Field mustard	cytosol	92.43	92.65
VIT_14s0128g00780.t01	Wine grape	cytosol	73.81	73.81
VIT_14s0128g00790.t01	Wine grape	cytosol	72.53	71.69
VIT_06s0004g01580.t01	Wine grape	cytosol	27.94	71.64
KRH68548	Soybean	cytosol	70.55	70.63
PGSC0003DMT400028158	Potato	cytosol	68.68	68.45
Solyc08g029000.2.1	Tomato	cytosol, extracellular, nucleus	68.22	68.06
Solyc01g099160.2.1	Tomato	cytosol, extracellular, nucleus	68.22	67.98
Solyc08g014000.2.1	Tomato	cytosol, nucleus, plastid	67.4	67.33
KRH33939	Soybean	cytosol, endoplasmic reticulum	67.52	67.05
PGSC0003DMT400063654	Potato	cytosol	38.07	66.6
PGSC0003DMT400063446	Potato	cytosol	62.17	66.42
PGSC0003DMT400054145	Potato	cytosol	66.24	66.32
CDY43490	Canola	cytosol, plasma membrane	92.32	65.92
GSMUA_Achr1P22970_001	Banana	cytosol	63.56	64.54
Solyc01g099180.2.1	Tomato	cytosol	64.14	64.52
PGSC0003DMT400063461	Potato	cytosol	51.8	64.12
PGSC0003DMT400063452	Potato	cytosol	58.91	63.33
Solyc01g099200.2.1	Tomato	cytosol, plastid	61.93	63.26
PGSC0003DMT400063469	Potato	cytosol	61.93	63.11
Solyc01g099190.2.1	Tomato	cytosol, extracellular, nucleus, plastid	62.98	63.05
PGSC0003DMT400063477	Potato	cytosol	62.75	62.97
Solyc01g099210.2.1	Tomato	cytosol	63.1	62.8
GSMUA_AchrUn_...	Banana	cytosol	62.4	62.69
GSMUA_AchrUn_...	Banana	cytosol	55.88	61.22
AT3G22400.1	Thale cress	cytosol	62.63	60.72
GSMUA_Achr1P24370_001	Banana	cytosol	59.72	60.57
Os03t0700400-00	Rice	cytosol, plasma membrane	8.85	60.32
GSMUA_Achr6P25110_001	Banana	cytosol	55.65	60.2
GSMUA_Achr6P25090_001	Banana	cytosol	58.32	59.79
Os03t0700700-01	Rice	cytosol, plasma membrane, plastid	60.3	59.06
EER93611	Sorghum	cytosol	60.19	58.22
TraesCS4B01G037800.1	Wheat	cytosol	59.49	58.2
TraesCS4A01G275800.1	Wheat	cytosol	16.18	58.16
TraesCS4D01G035100.1	Wheat	cytosol	59.37	58.09
TraesCS4A01G275900.1	Wheat	cytosol, unclear	59.37	58.09
TraesCS6D01G122000.1	Wheat	cytosol	20.95	58.06
Zm00001d033624_P001	Maize	cytosol	59.95	58.06
TraesCS4A01G359800.1	Wheat	cytosol	35.86	58.0
HORVU4Hr1G005920.1	Barley	cytosol, plasma membrane	59.25	57.97
GSMUA_Achr9P19250_001	Banana	plasma membrane	63.91	57.73
Zm00001d033623_P003	Maize	cytosol	58.21	57.67
EER93612	Sorghum	cytosol	58.09	57.62
Zm00001d013493_P001	Maize	cytosol, extracellular, mitochondrion	59.49	57.61
Os03t0699700-01	Rice	cytosol, plastid	57.39	57.13
TraesCS4B01G037900.1	Wheat	cytosol, golgi, nucleus, plastid, unclear	56.69	56.56
TraesCS4B01G037700.3	Wheat	cytosol, golgi	56.58	56.45
Os03t0738600-01	Rice	plasma membrane, plastid	57.16	56.44
TraesCS4D01G035200.1	Wheat	cytosol	54.25	56.21
KXG37783	Sorghum	cytosol	58.32	56.1
TraesCS5A01G378800.2	Wheat	cytosol	50.64	55.91
TraesCS5B01G382300.1	Wheat	cytosol, unclear	56.0	55.67
TraesCS5D01G388700.1	Wheat	cytosol, golgi, unclear	56.0	55.67
HORVU5Hr1G093700.3	Barley	cytosol, plasma membrane	55.88	55.56
EES04028	Sorghum	cytosol	56.46	55.56
TraesCS5B01G382400.1	Wheat	cytosol, golgi	55.3	55.49
TraesCS5A01G378700.1	Wheat	cytosol	55.76	55.44
EES04025	Sorghum	cytosol	56.0	55.41
HORVU5Hr1G093770.1	Barley	cytosol	55.65	55.39
TraesCS3B01G602500.1	Wheat	cytosol	56.69	55.28
TraesCS5B01G382600.1	Wheat	cytosol	54.95	54.82
Zm00001d042541_P002	Maize	cytosol	56.34	54.75
TraesCS5A01G378900.1	Wheat	cytosol	54.83	54.51
Zm00001d042540_P008	Maize	cytosol	56.46	54.37
TraesCS6A01G132200.1	Wheat	mitochondrion	54.71	53.84
TraesCS6A01G132500.1	Wheat	mitochondrion	54.71	53.84
TraesCS6B01G160400.1	Wheat	mitochondrion	54.71	53.84
TraesCS3B01G605700.1	Wheat	cytosol	55.41	53.79
GSMUA_Achr6P25080_001	Banana	cytosol	48.31	53.55
TraesCS5A01G379000.1	Wheat	nucleus, unclear	47.38	52.86
TraesCS5D01G388800.1	Wheat	cytosol	55.06	52.73
HORVU5Hr1G117110.1	Barley	cytosol	53.32	51.63
TraesCS5D01G513100.1	Wheat	cytosol	52.15	51.61
Os11t0575600-01	Rice	mitochondrion	52.15	51.61
HORVU5Hr1G054200.1	Barley	cytosol, mitochondrion	28.41	50.0
TraesCS6B01G395700.1	Wheat	cytosol	47.03	49.75
Solyc01g099170.2.1	Tomato	cytosol, mitochondrion	28.64	48.14
TraesCS6D01G121900.1	Wheat	mitochondrion	25.03	48.1
Solyc01g099150.2.1	Tomato	nucleus	47.61	47.45
AT3G45140.1	Thale cress	plastid	43.42	41.63
AT1G72520.1	Thale cress	plastid	43.42	40.28
AT1G67560.1	Thale cress	plastid	42.96	40.24
AT1G17420.1	Thale cress	cytosol, plastid	42.84	40.04
GSMUA_Achr6P25100_001	Banana	cytosol	46.8	3.35

Protein Annotations

Gene3D:1.20.245.10	Gene3D:2.60.60.20	Gene3D:3.10.450.60	Gene3D:4.10.372.10	Gene3D:4.10.375.10	MapMan:50.1.12
EntrezGene:841944	ProteinID:AAA17036.1	ProteinID:AAG00881.1	ProteinID:AAG51123.1	ProteinID:AEE33175.1	ArrayExpress:AT1G55020
EnsemblPlantsGene:AT1G55020	RefSeq:AT1G55020	TAIR:AT1G55020	RefSeq:AT1G55020-TAIR-G	EnsemblPlants:AT1G55020.1	TAIR:AT1G55020.1
EMBL:AY093104	Unigene:At.19984	EMBL:BT010358	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006629
GO:GO:0006631	GO:GO:0006633	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009536	GO:GO:0009653	GO:GO:0009719	GO:GO:0009737	GO:GO:0009753	GO:GO:0009791
GO:GO:0009987	GO:GO:0010311	GO:GO:0016491	GO:GO:0016702	GO:GO:0031408	GO:GO:0034440
GO:GO:0046872	GO:GO:0048364	GO:GO:0051213	GO:GO:0055114	GO:GO:1990136	InterPro:IPR001024
InterPro:IPR013819	InterPro:IPR027433	EMBL:L04637	Symbol:LOX1	InterPro:LipOase	InterPro:LipOase_C
InterPro:LipOase_CS	InterPro:LipOase_C_sf	InterPro:LipOase_Fe_BS	InterPro:LipOase_plant	InterPro:Lipoxygenase_dom_3	RefSeq:NP_175900.1
PFAM:PF00305	PFAM:PF01477	InterPro:PLAT/LH2_dom	InterPro:PLAT/LH2_dom_sf	PO:PO:0000013	PO:PO:0000016
PO:PO:0000037	PO:PO:0000256	PO:PO:0000262	PO:PO:0000293	PO:PO:0001054	PO:PO:0001078
PO:PO:0001081	PO:PO:0001185	PO:PO:0004507	PO:PO:0007098	PO:PO:0007115	PO:PO:0007123
PO:PO:0007611	PO:PO:0007616	PO:PO:0008019	PO:PO:0009005	PO:PO:0009006	PO:PO:0009009
PO:PO:0009010	PO:PO:0009025	PO:PO:0009029	PO:PO:0009030	PO:PO:0009031	PO:PO:0009032
PO:PO:0009046	PO:PO:0009047	PO:PO:0009052	PO:PO:0020030	PO:PO:0020038	PO:PO:0020100
PO:PO:0020137	PO:PO:0025022	PO:PO:0025281	PRINTS:PR00087	PRINTS:PR00468	ScanProsite:PS00081
ScanProsite:PS00711	PFscan:PS50095	PFscan:PS51393	PANTHER:PTHR11771	PANTHER:PTHR11771:SF53	UniProt:Q06327
SMART:SM00308	SUPFAM:SSF48484	SUPFAM:SSF49723	UniParc:UPI0000001176	SEG:seg	:

Description

LOX1Linoleate 9S-lipoxygenase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q06327]

Coordinates

chr1:+:20525654..20530468

Molecular Weight (calculated)

98050.5 Da

IEP (calculated)

5.205

GRAVY (calculated)

-0.438

Length

859 amino acids

Sequence
(BLAST)

001: MFGELRDLLT GGGNETTTKK VKGTVVLMKK NVLDFNDFNA SFLDRLHEFL GNKITLRLVS SDVTDSENGS KGKLGKAAHL EDWITTITSL TAGESAFKVT
101: FDYETDFGYP GAFLIRNSHF SEFLLKSLTL EDVPGHGRVH YICNSWIYPA KHYTTDRVFF SNKTYLPHET PATLLKYREE ELVSLRGTGE GELKEWDRVY
201: DYAYYNDLGV PPKNPRPVLG GTQEYPYPRR GRTGRKPTKE DPQTESRLPI TSSLDIYVPR DERFGHLKMS DFLAYALKAI AQFIQPALEA VFDDTPKEFD
301: SFEDVLKIYE EGIDLPNQAL IDSIVKNIPL EMLKEIFRTD GQKFLKFPVP QVIKEDKTAW RTDEEFAREM LAGLNPVVIQ LLKEFPPKSK LDSESYGNQN
401: STITKSHIEH NLDGLTVEEA LEKERLFILD HHDTLMPYLG RVNTTTTKTY ASRTLLFLKD DGTLKPLVIE LSLPHPNGDK FGAVSEVYTP GEGVYDSLWQ
501: LAKAFVGVND SGNHQLISHW MQTHASIEPF VIATNRQLSV LHPVFKLLEP HFRDTMNINA LARQILINGG GIFEITVFPS KYAMEMSSFI YKNHWTFPDQ
601: ALPAELKKRG MAVEDPEAPH GLRLRIKDYP YAVDGLEVWY AIESWVRDYI FLFYKIEEDI QTDTELQAWW KEVREEGHGD KKSEPWWPKM QTREELVESC
701: TIIIWVASAL HAAVNFGQYP VAGYLPNRPT ISRQYMPKEN TPEFEELEKN PDKVFLKTIT AQLQTLLGIS LIEILSTHSS DEVYLGQRDS KEWAAEKEAL
801: EAFEKFGEKV KEIEKNIDER NDDETLKNRT GLVKMPYTLL FPSSEGGVTG RGIPNSVSI

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.