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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 7
  • cytosol 2
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, plastid
BaCelLo:plastid
ChloroP:plastid
iPSORT:plastid
MultiLoc:plastid
Predotar:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:cytosol
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX82146 Canola plastid 84.67 92.24
CDY49853 Canola plastid 91.36 92.06
Bra008037.1-P Field mustard plastid 91.04 91.73
AT1G17420.1 Thale cress cytosol, plastid 83.48 84.11
Solyc03g122340.2.1 Tomato cytosol 71.6 73.02
KRH06197 Soybean nucleus 72.68 72.99
PGSC0003DMT400058933 Potato plastid 71.49 72.43
KRH47615 Soybean nucleus 72.46 72.38
VIT_09s0002g01080.t01 Wine grape cytosol 70.52 70.44
KRH69027 Soybean plastid 68.47 70.37
KRG97300 Soybean plastid 67.71 69.74
HORVU5Hr1G055110.2 Barley mitochondrion 25.59 67.14
GSMUA_Achr9P16020_001 Banana plastid 61.56 65.07
GSMUA_Achr10P... Banana cytosol 61.56 64.77
GSMUA_Achr3P07870_001 Banana plastid 61.34 64.62
Os04t0447100-01 Rice cytosol 55.08 64.07
GSMUA_Achr8P22700_001 Banana plastid 58.53 63.92
EER95400 Sorghum mitochondrion 62.2 62.34
Os03t0179900-01 Rice plastid 61.77 62.31
TraesCS4B01G295200.1 Wheat plastid 61.66 61.86
HORVU4Hr1G076570.6 Barley cytosol, plastid 60.58 61.24
TraesCS4D01G294100.1 Wheat plastid 60.8 61.06
TraesCS4A01G009400.1 Wheat plastid 60.69 60.89
TraesCS2B01G333600.1 Wheat plastid 59.29 59.87
TraesCS2D01G313400.1 Wheat plastid 58.53 59.56
EES10882 Sorghum plastid 58.96 59.09
Zm00001d027893_P001 Maize plastid 61.66 58.99
TraesCS2A01G315100.2 Wheat plastid 59.07 58.19
Zm00001d025524_P001 Maize plastid 57.78 57.59
Zm00001d003533_P001 Maize plastid 58.42 57.49
AT1G67560.1 Thale cress plastid 48.06 48.53
AT1G55020.1 Thale cress cytosol 40.28 43.42
AT3G45140.1 Thale cress plastid 41.9 43.3
AT3G22400.1 Thale cress cytosol 40.17 41.99
Protein Annotations
Gene3D:1.20.245.10MapMan:11.7.1.2Gene3D:2.60.60.20Gene3D:3.10.450.60Gene3D:4.10.372.10Gene3D:4.10.375.10
EntrezGene:843584ProteinID:AAG51846.1ProteinID:AAG52571.1ProteinID:AEE35334.1EMBL:AJ302042ArrayExpress:AT1G72520
EnsemblPlantsGene:AT1G72520RefSeq:AT1G72520TAIR:AT1G72520RefSeq:AT1G72520-TAIR-GEnsemblPlants:AT1G72520.1TAIR:AT1G72520.1
EMBL:AY056166EMBL:AY091193Unigene:At.18241GO:GO:0000003GO:GO:0003674GO:GO:0003824
GO:GO:0005488GO:GO:0005515GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737
GO:GO:0006629GO:GO:0006631GO:GO:0006633GO:GO:0006950GO:GO:0007275GO:GO:0008150
GO:GO:0008152GO:GO:0009058GO:GO:0009507GO:GO:0009536GO:GO:0009555GO:GO:0009605
GO:GO:0009607GO:GO:0009611GO:GO:0009617GO:GO:0009791GO:GO:0009901GO:GO:0009908
GO:GO:0009987GO:GO:0010193GO:GO:0016165GO:GO:0016491GO:GO:0016702GO:GO:0031408
GO:GO:0034440GO:GO:0046872GO:GO:0048653GO:GO:0051213GO:GO:0055114GO:GO:0080086
InterPro:IPR001024InterPro:IPR013819InterPro:IPR027433Symbol:LOX4InterPro:LipOaseInterPro:LipOase_C
InterPro:LipOase_CSInterPro:LipOase_C_sfInterPro:LipOase_Fe_BSInterPro:LipOase_plantInterPro:Lipoxygenase_dom_3RefSeq:NP_177396.1
PFAM:PF00305PFAM:PF01477InterPro:PLAT/LH2_domInterPro:PLAT/LH2_dom_sfPO:PO:0000037PO:PO:0000230
PO:PO:0000293PO:PO:0007064PO:PO:0007095PO:PO:0007098PO:PO:0007103PO:PO:0007115
PO:PO:0007123PO:PO:0007611PO:PO:0007616PO:PO:0009005PO:PO:0009025PO:PO:0009029
PO:PO:0009030PO:PO:0009031PO:PO:0009032PO:PO:0009046PO:PO:0009047PO:PO:0009052
PO:PO:0020030PO:PO:0020038PO:PO:0020100PO:PO:0020137PO:PO:0025022PO:PO:0025281
PRINTS:PR00087PRINTS:PR00468ScanProsite:PS00081ScanProsite:PS00711PFscan:PS50095PFscan:PS51393
PANTHER:PTHR11771PANTHER:PTHR11771:SF67UniProt:Q9FNX8SMART:SM00308SUPFAM:SSF48484SUPFAM:SSF49723
UniParc:UPI000009D763SEG:seg::::
Description
LOX4Lipoxygenase 4, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FNX8]
Coordinates
chr1:+:27308513..27312756
Molecular Weight (calculated)
104820.0 Da
IEP (calculated)
7.521
GRAVY (calculated)
-0.453
Length
926 amino acids
Sequence
(BLAST)
001: MALANEIMGS RLIFERSSSL ASPFHSRFSI KKKTQRTQFS INPFDPRPMR AVNSSGVVAA ISEDLVKTLR ISTVGRKQEK EEEEEKSVKF KVRAVATVRN
101: KNKEDFKETL VKHLDAFTDK IGRNVVLELM STQVDPKTNE PKKSKAAVLK DWSKKSNSKA ERVHYTAEFT VDSAFGSPGA ITVTNKHQKE FFLESITIEG
201: FACGPVHFPC NSWVQSQKDH PSKRILFTNQ PYLPSETPSG LRTLREKELE NLRGNGKGER KLSDRIYDYD VYNDIGNPDI SRELARPTLG GREFPYPRRC
301: RTGRSSTDTD MMSERRVEKP LPMYVPRDEQ FEESKQNTFA ACRLKAVLHN LIPSLKASIL AEDFANFGEI DSLYKEGLLL KLGFQDDMFK KFPLPKIVTT
401: LQKSSEGLLR YDTPKIVSKD KYAWLRDDEF ARQAIAGINP VNIERVTSYP PVSNLDPEIY GPGLHSALTE DHIIGQLDGL TVQQALETNR LFMVDYHDIY
501: LPFLDRINAL DGRKAYATRT ILFLTRLGTL KPIAIELSLP SQSSSNQKSK RVVTPPVDAT SNWMWQLAKA HVGSNDAGVH QLVNHWLRTH ACLEPFILAA
601: HRQLSAMHPI FKLLDPHMRY TLEINAVARQ TLISADGVIE SCFTAGQYGL EISSAAYKNK WRFDMEGLPA DLIRRGMAVP DPTQPHGLKL LVEDYPYAND
701: GLLLWSAIQT WVRTYVERYY ANSNLIQTDT ELQAWYSESI NVGHADHRDA EWWPKLSTVE DLVSVITTII WLASAQHAAL NFGQYPYGGY VPNRPPLMRR
801: LIPDESDPEF TSFIEDPQKY FFSSMPSLLQ TTKFMAVVDT LSTHSPDEEY IGERQQPSIW TGDAEIVDAF YGFSAEIGRI EKEIDKRNRD PSRRNRCGAG
901: VLPYELMAPS SEPGVTCRGV PNSVSI
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.