Factsheet for Os03t0179900-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
mitochondrion 3
cytosol 4

Predictors

GFP

MS/MS

Papers

plastid: 21433289

msms PMID: 21433289 doi

S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky

Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os03t0596900-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G17420.1	Os03t0596900-01	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU5Hr1G055110.2	Barley	mitochondrion	34.2	88.95
EER95400	Sorghum	mitochondrion	86.6	86.04
HORVU4Hr1G076570.6	Barley	cytosol, plastid	84.42	84.61
TraesCS4A01G009400.1	Wheat	plastid	84.64	84.18
TraesCS4D01G294100.1	Wheat	plastid	84.53	84.16
TraesCS4B01G295200.1	Wheat	plastid	84.53	84.07
Zm00001d027893_P001	Maize	plastid	86.6	82.13
GSMUA_Achr10P...	Banana	cytosol	71.13	74.2
Os04t0447100-01	Rice	cytosol	60.68	69.97
VIT_00s0265g00170.t01	Wine grape	cytosol	35.73	64.95
Solyc03g122340.2.1	Tomato	cytosol	63.83	64.54
PGSC0003DMT400058933	Potato	plastid	64.05	64.33
CDY21750	Canola	cytosol, mitochondrion, plastid	64.16	64.09
CDX81825	Canola	cytosol	63.94	63.87
Bra030988.1-P	Field mustard	cytosol, mitochondrion, plastid	63.94	63.87
AT1G17420.1	Thale cress	cytosol, plastid	63.83	63.77
CDY64617	Canola	cytosol	63.4	63.33
VIT_09s0002g01080.t01	Wine grape	cytosol	63.73	63.11
CDX96769	Canola	cytosol	63.07	63.0
Bra016602.1-P	Field mustard	cytosol	62.96	62.89
KRH06197	Soybean	nucleus	62.85	62.58
KRG97300	Soybean	plastid	61.11	62.4
KRH47615	Soybean	nucleus	62.96	62.35
KRH69027	Soybean	plastid	61.0	62.15
AT1G72520.1	Thale cress	plastid	62.31	61.77
Bra008037.1-P	Field mustard	plastid	61.11	61.04
CDX82146	Canola	plastid	56.43	60.94
CDY49853	Canola	plastid	61.0	60.94
Os12t0559934-00	Rice	cytosol	11.55	54.36
KRH10882	Soybean	cytosol	24.62	52.07
Os03t0700400-00	Rice	cytosol, plasma membrane	6.86	50.0
KRH21441	Soybean	cytosol	48.69	49.12
KRH50048	Soybean	cytosol	47.93	48.35
Os08t0508800-01	Rice	nucleus, plasma membrane	42.48	42.21
Os02t0194700-01	Rice	plasma membrane	42.16	41.79
Os08t0509100-01	Rice	nucleus	42.37	41.34
Os03t0738600-01	Rice	plasma membrane, plastid	39.0	41.15
Os03t0700700-01	Rice	cytosol, plasma membrane, plastid	39.0	40.82
Os03t0699700-01	Rice	cytosol, plastid	37.8	40.21
Os11t0575600-01	Rice	mitochondrion	37.8	39.98
Os12t0559200-01	Rice	plastid	40.09	39.91
Os12t0560200-00	Rice	cytosol	4.25	39.39
Os05t0304600-01	Rice	plastid	36.27	39.32

Protein Annotations

Gene3D:1.20.245.10	MapMan:11.7.1.2	Gene3D:2.60.60.20	Gene3D:3.10.450.60	Gene3D:4.10.372.10	Gene3D:4.10.375.10
EntrezGene:4331824	ProteinID:AAN65431.1	ProteinID:AAO13474.1	ProteinID:ABF94297.1	EMBL:AK121637	ProteinID:BAF11072.1
ProteinID:BAS82610.1	ProteinID:BAS82611.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515
GO:GO:0006629	GO:GO:0006631	GO:GO:0006633	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016165	GO:GO:0016491	GO:GO:0016702	GO:GO:0031408	GO:GO:0046872
GO:GO:0051213	GO:GO:0055114	InterPro:IPR001024	InterPro:IPR013819	InterPro:IPR027433	InterPro:LipOase
InterPro:LipOase_C	InterPro:LipOase_CS	InterPro:LipOase_C_sf	InterPro:LipOase_Fe_BS	InterPro:LipOase_plant	InterPro:Lipoxygenase_dom_3
EnsemblPlantsGene:Os03g0179900	EnsemblPlants:Os03t0179900-01	PFAM:PF00305	PFAM:PF01477	InterPro:PLAT/LH2_dom	InterPro:PLAT/LH2_dom_sf
PRINTS:PR00087	PRINTS:PR00468	ScanProsite:PS00081	ScanProsite:PS00711	PFscan:PS50095	PFscan:PS51393
PANTHER:PTHR11771	PANTHER:PTHR11771:SF67	UniProt:Q8H016	SMART:SM00308	SUPFAM:SSF48484	SUPFAM:SSF49723
UniParc:UPI000058E39C	RefSeq:XP_015630875.1	SEG:seg	:	:	:

Description

LIPOXYGENASE 2Similar to Avr9/Cf-9 rapidly elicited protein 44 (Fragment). (Os03t0179900-01);Similar to Lipoxygenase. (Os03t0179900-02)

Coordinates

chr3:+:4187158..4193200

Molecular Weight (calculated)

101965.0 Da

IEP (calculated)

7.425

GRAVY (calculated)

-0.318

Length

918 amino acids

Sequence
(BLAST)

001: MELTGLTRAA AAATVTPPAP RRGWGELRFA PLLPGERHGR RKVVVAAISE EVPRLAASPS SGIKGGGAGE RRPAPEKVAL RAALTVRRKQ KEDIKEAVAG
101: HLDALWDMVG RNVVLELIST KIHPRTKKPM QSGRVSIKDW CQKRGAKGDH VVYTAEFTVD ADFGEPGAIA VANRHNREFF LESIVVEGGG LPCGPVHFAC
201: NSWVQSTREL PTKRVFFSNK PYLPSETPPG LRELREKELK DLRGDGTGVR KLSDRIYDYA TYNDLGNPDK GKEFIRPILG GEKIPYPRRC RTGRPPTDTN
301: MLAESRVEKP HPIYVPRDEA FEELKQGAFS SGRLRAVLHT LIPSLIASIS AETHNFQGFH HIDNLYKEGL RLKLGLQEHL FQKIPLVQKI QESSEGMLRY
401: DTPSILSKDK FAWLRDDEFA RQAVAGINPV NIERLQVFPP VSKLDPAIYG PPESSITETH IAGHLNGLTV QQAMDEAKLF IVDYHDAYLP FLDRINAIDG
501: RKAYATRTIF FLTEAGTLKP IAIELSLPPA KPGEPRPSKV LTPPYDATSN WLWMLAKAHV SSNDAGVHQL VNHWLRTHAT MEPFILAAHR HMSAMHPIFK
601: LLHPHMRYTL EINALARQSL INADGVIESC FTPGPVSGEI SAAYYRNHWR FDLEGLPSDL IRRGVAVEDA TQPHGVRLLI EDYPYANDGL LLWSAIRSWV
701: ESYVQLYYPD AGTVQCDLEL QGWYHESIHV GHGDLRHAPW WPPLSTPVDL ASILTTLVWL ASAQHAALNF GQYPLGGYVP NRPPLIRRLL PDLERDAAEY
801: AAFLADPHRF FLNAMPGVLE ATKFMAVVDT LSTHSPDEEY LGEGRDEGGV PWTADEAAVA AHGMFAADVR RAEETIERRN ADHGRKNRCG AGVLPYELLA
901: PSSPPGVTCR GVPNSISI

Best Arabidopsis Sequence Match ( AT1G17420.1 )
(BLAST)

001: MALAKELMGY PLITERSSLV SSASHFKKRT QSTQFSINPF DRRPRKTKSG VVAAISEDLV KTLRFSTTTG DRKSEEEEKA AVKFKVRAVV TVRNKNKEDL
101: KETLVKHLDA FADKIGRNIV LELISTQLDP KTKLPKKSNA AVLKDWSKKS KTKAERVHYT AEFTVDAAFG SPGAITVMNK HQKEFFLESI TIEGFALGPV
201: HFPCNSWVQS QKDHPDKRIF FTNQPYLPNE TPSGLRVLRE KELKNLRGDG SGVRKLSDRI YDFDVYNDLG NPDKSSELSR PKLGGKEVPY PRRCRTGRQS
301: TVSDKDAESR VEKPLPMYVP RDEQFEESKQ DTFAAGRLKA VLHHLIPSLK ASIVAEDFAD FGEIDRLYKE GLLLKLGFQD DIFKKFPLPK VVVDTLQEST
401: KGLLKYDTPK ILSKDKNAWL RDDEFARQAI AGINPVNIER VKTFPPVSNL DPKIYGPQHS ALTDDHIIGH LDGFSVQQAL EENRLYMLDY HDIFLPFLDR
501: INALDGRKAY ATRTIFFLTR LGTLKPVAIE LSLPPHGPKH RSKRVLTPPV DATSNWMWQL AKAHVSSNDA GVHQLVNHWL RTHACLEPFI LAAHRQLSAM
601: HPIFKLLDPH MRYTLEINAL ARQSLISADG VIEGGFTAGA YGMEMSAAAY KSSWRFDMEG LPADLIRRGM AIPDATQPHG LKLLIEDYPY ANDGLLLWSA
701: IQTWVRTYVE RYYPNPNLIK TDSELQSWYS ESINVGHADL RDADWWPELS TVDDLVSILT TLIWLASAQH AALNFGQYPY GGYVPNRPPL MRRLIPDESD
801: PEYASFISHP EKYYFSSMPS LAQTSKFMAV VDTLSTHSPD EEYIGERQQP SIWTGDAEIV EAFYGFAAEI GRIEKEIEKR NADPDRRNRC GAGVLPYELL
901: VPSSEPGVTC RGVPNSVSI

Arabidopsis Description

LOX3Lipoxygenase 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LNR3]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.