Factsheet for Bra030988.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, cytosol

Predictor Summary:

plastid 4
mitochondrion 4
cytosol 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra010432.1-P
Bra026415.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G17420.1	Bra010432.1-P	AT4G26630.1	25387881
AT1G17420.1	Bra026415.1-P	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY21750	Canola	cytosol, mitochondrion, plastid	99.24	99.24
Bra016602.1-P	Field mustard	cytosol	92.93	92.93
AT1G17420.1	Thale cress	cytosol, plastid	92.38	92.38
Bra008037.1-P	Field mustard	plastid	81.61	81.61
Solyc03g122340.2.1	Tomato	cytosol	71.93	72.8
PGSC0003DMT400058933	Potato	plastid	71.82	72.21
KRH06197	Soybean	nucleus	72.03	71.8
KRH47615	Soybean	nucleus	71.82	71.2
KRH69027	Soybean	plastid	68.23	69.59
VIT_09s0002g01080.t01	Wine grape	cytosol	70.08	69.47
KRG97300	Soybean	plastid	67.57	69.08
HORVU5Hr1G055110.2	Barley	mitochondrion	26.44	68.84
Os04t0447100-01	Rice	cytosol	57.02	65.83
GSMUA_Achr9P16020_001	Banana	plastid	61.92	64.95
GSMUA_Achr3P07870_001	Banana	plastid	62.02	64.85
GSMUA_Achr8P22700_001	Banana	plastid	59.52	64.5
GSMUA_Achr10P...	Banana	cytosol	61.59	64.32
Os03t0179900-01	Rice	plastid	63.87	63.94
EER95400	Sorghum	mitochondrion	63.11	62.77
TraesCS4B01G295200.1	Wheat	plastid	62.13	61.86
TraesCS2B01G333600.1	Wheat	plastid	61.48	61.61
TraesCS2D01G313400.1	Wheat	plastid	60.94	61.54
HORVU4Hr1G076570.6	Barley	cytosol, plastid	61.26	61.46
TraesCS4A01G009400.1	Wheat	plastid	61.59	61.32
TraesCS4D01G294100.1	Wheat	plastid	61.48	61.28
TraesCS2A01G315100.2	Wheat	plastid	61.26	59.89
EES10882	Sorghum	plastid	60.07	59.74
Zm00001d027893_P001	Maize	plastid	62.79	59.61
Zm00001d025524_P001	Maize	plastid	59.19	58.56
Zm00001d003533_P001	Maize	plastid	59.63	58.24
Bra004081.1-P	Field mustard	plastid	48.2	48.26
Bra033991.1-P	Field mustard	plastid	47.66	47.97
Bra021322.1-P	Field mustard	cytosol	40.37	43.29
Bra003526.1-P	Field mustard	plastid	42.11	42.81
Bra004059.1-P	Field mustard	plastid	40.26	42.73
Bra004057.1-P	Field mustard	cytosol	41.24	42.54
Bra004060.1-P	Field mustard	plastid	41.35	42.27
Bra039948.1-P	Field mustard	cytosol	40.48	41.94
Bra022535.1-P	Field mustard	plastid	36.34	41.18
Bra023829.1-P	Field mustard	cytosol	40.37	41.09
Bra004058.1-P	Field mustard	plastid	41.57	36.11

Protein Annotations

Gene3D:1.20.245.10	MapMan:11.7.1.2	Gene3D:2.60.60.20	Gene3D:3.10.450.60	Gene3D:4.10.372.10	Gene3D:4.10.375.10
EnsemblPlantsGene:Bra030988	EnsemblPlants:Bra030988.1	EnsemblPlants:Bra030988.1-P	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005515	GO:GO:0006629	GO:GO:0006633	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016491	GO:GO:0016702	GO:GO:0031408	GO:GO:0046872	GO:GO:0051213
GO:GO:0055114	InterPro:IPR001024	InterPro:IPR013819	InterPro:IPR027433	InterPro:LipOase	InterPro:LipOase_C
InterPro:LipOase_CS	InterPro:LipOase_C_sf	InterPro:LipOase_Fe_BS	InterPro:LipOase_plant	InterPro:Lipoxygenase_dom_3	UniProt:M4EQB7
PFAM:PF00305	PFAM:PF01477	InterPro:PLAT/LH2_dom	InterPro:PLAT/LH2_dom_sf	PRINTS:PR00087	PRINTS:PR00468
ScanProsite:PS00081	ScanProsite:PS00711	PFscan:PS50095	PFscan:PS51393	PANTHER:PTHR11771	PANTHER:PTHR11771:SF67
SMART:SM00308	SUPFAM:SSF48484	SUPFAM:SSF49723	UniParc:UPI0002542B55	SEG:seg	:

Description

AT1G17420 (E=0.0) LOX3 | LOX3; electron carrier/ iron ion binding / lipoxygenase/ metal ion binding / oxidoreductase, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen

Coordinates

chrA09:-:33078666..33083251

Molecular Weight (calculated)

103840.0 Da

IEP (calculated)

7.628

GRAVY (calculated)

-0.454

Length

919 amino acids

Sequence
(BLAST)

001: MALAKELMGY PLTSKRPLLV WSASHFKKRT QPTQLSIKPF DRRPRTSKSG VVAAISEDLV KTLRFNTTTG DRKSEEEEKA AVKFKVRAVV TVRNKNKEDF
101: KETLVKHLDA FGDKIGRNIV LELVSTELDP KTNMPKKSNA AVLKDWSKKS KTKAERVHYT AEFTVDAAFG SPGAITVMNK HQKEFFLESI TIEGFAVGPV
201: HFPCNSWVQS QKDHPEKRIF FTNQPFLPSE TPDGLKKLRE RELKNLRGDG SGVRKLSDRI YDFDVYNDLG NPDKSSELSR PKLGGKEIPY PRRCRTGRHP
301: TDTDKEAESR VEKPLPMYVP RDEQFEETKQ KTFAAGRLKA VLHHLVPSLK ASILAEDFAD FGEIDGLYKE GLLLKLGFQD EIFNKFPLPK AIVNTLQESS
401: KGLLKYDTPK ILSKDKNAWL RDDEFARQAI AGINPVNIER VRTFPPVSNL DPEIYGPQHS ALTSDHIIGH LDGLSVQQAL EENRLYMLNY HDIFLPFLDR
501: INALDGRKAY ATRTIFFLTR LGTLKPVAIE LSLPPHGPNH RSKRVVTPPV DATSNWVWQL AKAHVSSNDA GIHQLVNHWL RTHACLEPFI LAAHRQMSAM
601: HPIFKLLDPH MRYTLEINAL ARQSLISADG VIEEGFTAGS YGMEMSAAAY KSSWRFDMEG LPADLIRRGI AVPDPTKPHG LKLLIEDYPY ANDGLLLWSA
701: IQTWVRTYVE RYYPNPNLIK TDSELQSWYS ESINVGHADL RDAEWWPKLN TVDDLASILT TLIWLASAQH AALNFGQYPY GGYVPNRPPL MRRLIPDESD
801: PEYASFISDP EKFYFSAMPS LLQTSKFMAV VDTLSTHSPD EEYIGERQQP SIWTGDAEIV DAFYGFAAEI GRIEKEIEER NSDPDRRNRC GAGVLPYELL
901: VPSSEPGVTC RGVPNSVSI

Best Arabidopsis Sequence Match ( AT1G17420.1 )
(BLAST)

001: MALAKELMGY PLITERSSLV SSASHFKKRT QSTQFSINPF DRRPRKTKSG VVAAISEDLV KTLRFSTTTG DRKSEEEEKA AVKFKVRAVV TVRNKNKEDL
101: KETLVKHLDA FADKIGRNIV LELISTQLDP KTKLPKKSNA AVLKDWSKKS KTKAERVHYT AEFTVDAAFG SPGAITVMNK HQKEFFLESI TIEGFALGPV
201: HFPCNSWVQS QKDHPDKRIF FTNQPYLPNE TPSGLRVLRE KELKNLRGDG SGVRKLSDRI YDFDVYNDLG NPDKSSELSR PKLGGKEVPY PRRCRTGRQS
301: TVSDKDAESR VEKPLPMYVP RDEQFEESKQ DTFAAGRLKA VLHHLIPSLK ASIVAEDFAD FGEIDRLYKE GLLLKLGFQD DIFKKFPLPK VVVDTLQEST
401: KGLLKYDTPK ILSKDKNAWL RDDEFARQAI AGINPVNIER VKTFPPVSNL DPKIYGPQHS ALTDDHIIGH LDGFSVQQAL EENRLYMLDY HDIFLPFLDR
501: INALDGRKAY ATRTIFFLTR LGTLKPVAIE LSLPPHGPKH RSKRVLTPPV DATSNWMWQL AKAHVSSNDA GVHQLVNHWL RTHACLEPFI LAAHRQLSAM
601: HPIFKLLDPH MRYTLEINAL ARQSLISADG VIEGGFTAGA YGMEMSAAAY KSSWRFDMEG LPADLIRRGM AIPDATQPHG LKLLIEDYPY ANDGLLLWSA
701: IQTWVRTYVE RYYPNPNLIK TDSELQSWYS ESINVGHADL RDADWWPELS TVDDLVSILT TLIWLASAQH AALNFGQYPY GGYVPNRPPL MRRLIPDESD
801: PEYASFISHP EKYYFSSMPS LAQTSKFMAV VDTLSTHSPD EEYIGERQQP SIWTGDAEIV EAFYGFAAEI GRIEKEIEKR NADPDRRNRC GAGVLPYELL
901: VPSSEPGVTC RGVPNSVSI

Arabidopsis Description

LOX3Lipoxygenase 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LNR3]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.