Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 1
- mitochondrion 2
- cytosol 3
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
PPI
Inferred distinct locusB in Crop
locusB | locations |
---|---|
Os03t0596900-01 |
Inferred from Arabidopsis experimental PPI
Ath locusA | locusB | Ath locusB | Paper |
---|---|---|---|
AT1G17420.1 | Os03t0596900-01 | AT4G26630.1 | 25387881 |
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
TraesCS2D01G313400.1 | Wheat | plastid | 89.07 | 77.91 |
EES10882 | Sorghum | plastid | 89.95 | 77.49 |
TraesCS2B01G333600.1 | Wheat | plastid | 89.07 | 77.32 |
TraesCS2A01G315100.2 | Wheat | plastid | 89.95 | 76.17 |
Zm00001d025524_P001 | Maize | plastid | 88.44 | 75.78 |
Zm00001d003533_P001 | Maize | plastid | 89.45 | 75.66 |
GSMUA_Achr3P07870_001 | Banana | plastid | 73.74 | 66.78 |
GSMUA_Achr8P22700_001 | Banana | plastid | 71.11 | 66.75 |
VIT_00s0265g00170.t01 | Wine grape | cytosol | 41.96 | 66.14 |
GSMUA_Achr9P16020_001 | Banana | plastid | 72.61 | 65.98 |
Os03t0179900-01 | Rice | plastid | 69.97 | 60.68 |
CDY21750 | Canola | cytosol, mitochondrion, plastid | 65.95 | 57.13 |
Bra030988.1-P | Field mustard | cytosol, mitochondrion, plastid | 65.83 | 57.02 |
CDX81825 | Canola | cytosol | 65.58 | 56.8 |
AT1G17420.1 | Thale cress | cytosol, plastid | 65.58 | 56.8 |
CDY64617 | Canola | cytosol | 65.45 | 56.69 |
Bra016602.1-P | Field mustard | cytosol | 65.33 | 56.58 |
CDX96769 | Canola | cytosol | 65.2 | 56.47 |
Solyc03g122340.2.1 | Tomato | cytosol | 63.94 | 56.06 |
VIT_09s0002g01080.t01 | Wine grape | cytosol | 65.2 | 55.99 |
PGSC0003DMT400058933 | Potato | plastid | 64.07 | 55.8 |
AT1G72520.1 | Thale cress | plastid | 64.07 | 55.08 |
Bra008037.1-P | Field mustard | plastid | 63.57 | 55.06 |
CDY49853 | Canola | plastid | 63.57 | 55.06 |
CDX82146 | Canola | plastid | 58.67 | 54.94 |
KRH06197 | Soybean | nucleus | 63.44 | 54.77 |
KRH47615 | Soybean | nucleus | 63.69 | 54.69 |
KRG97300 | Soybean | plastid | 61.43 | 54.39 |
Os12t0559934-00 | Rice | cytosol | 13.32 | 54.36 |
KRH69027 | Soybean | plastid | 61.06 | 53.94 |
KRH10882 | Soybean | cytosol | 28.27 | 51.84 |
Os03t0700400-00 | Rice | cytosol, plasma membrane | 8.04 | 50.79 |
KRH50048 | Soybean | cytosol | 53.89 | 47.14 |
KRH21441 | Soybean | cytosol | 53.02 | 46.37 |
Os08t0508800-01 | Rice | nucleus, plasma membrane | 47.99 | 41.34 |
Os12t0560200-00 | Rice | cytosol | 5.03 | 40.4 |
Os02t0194700-01 | Rice | plasma membrane | 46.73 | 40.17 |
Os08t0509100-01 | Rice | nucleus | 47.49 | 40.17 |
Os03t0699700-01 | Rice | cytosol, plastid | 43.34 | 39.98 |
Os03t0738600-01 | Rice | plasma membrane, plastid | 43.09 | 39.43 |
Os03t0700700-01 | Rice | cytosol, plasma membrane, plastid | 43.22 | 39.22 |
Os05t0304600-01 | Rice | plastid | 41.46 | 38.96 |
Os12t0559200-01 | Rice | plastid | 44.1 | 38.07 |
Os11t0575600-01 | Rice | mitochondrion | 40.58 | 37.21 |
Protein Annotations
Gene3D:1.20.245.10 | MapMan:11.7.1.2 | Gene3D:2.60.60.20 | Gene3D:3.10.450.60 | Gene3D:4.10.372.10 | Gene3D:4.10.375.10 |
UniProt:A0A0P0WB12 | ProteinID:BAS89410.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 |
GO:GO:0005515 | GO:GO:0006629 | GO:GO:0006631 | GO:GO:0006633 | GO:GO:0008150 | GO:GO:0008152 |
GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016165 | GO:GO:0016491 | GO:GO:0016702 | GO:GO:0031408 |
GO:GO:0046872 | GO:GO:0051213 | GO:GO:0055114 | InterPro:IPR001024 | InterPro:IPR013819 | InterPro:IPR027433 |
InterPro:LipOase | InterPro:LipOase_C | InterPro:LipOase_CS | InterPro:LipOase_C_sf | InterPro:LipOase_Fe_BS | InterPro:LipOase_plant |
InterPro:Lipoxygenase_dom_3 | EnsemblPlantsGene:Os04g0447100 | EnsemblPlants:Os04t0447100-01 | PFAM:PF00305 | PFAM:PF01477 | InterPro:PLAT/LH2_dom |
InterPro:PLAT/LH2_dom_sf | PRINTS:PR00087 | PRINTS:PR00468 | ScanProsite:PS00081 | ScanProsite:PS00711 | PFscan:PS50095 |
PFscan:PS51393 | PANTHER:PTHR11771 | PANTHER:PTHR11771:SF67 | SMART:SM00308 | SUPFAM:SSF48484 | SUPFAM:SSF49723 |
UniParc:UPI000393ADA5 | SEG:seg | : | : | : | : |
Description
LIPOXYGENASE 6Similar to Lipoxygenase. (Os04t0447100-01)
Coordinates
chr4:+:22305669..22309225
Molecular Weight (calculated)
89173.1 Da
IEP (calculated)
6.085
GRAVY (calculated)
-0.326
Length
796 amino acids
Sequence
(BLAST)
(BLAST)
001: VYLLVWGFAG KGTPKKSKPS ALVGWFDKKD VKAERVVYTA EFAVDAGFGE PGAVTVLNRH QREFYIESIV VEGFPTGPAH FTCNSWVQPT RVSRDRRVFF
101: SNRPYLPSET PPGLRELRLR ELADLRGDGT GERRITDRVY DYDVYNDLGN PDKGVASARP VLGGEQMPYP RRMRTGRPST ATDASAESRV EYPEPIYVSR
201: DEEFEEGKNE MLSEGAIKAL LHNFMPLLVS SVSPDIRDFA GFHDVDNLFK EGLRLKQALH DQLFQKIPFV RKIQENSEGL LRYDTPDIIK KDKFAWLRDD
301: EFARQALAGI NPVNIERLQA FPPVSKLDPA VYGPPESAIT EEHIIGHLDG MSVQEAVEGS RLYMLDYHDI FLPFLDRINA QDGRKAYGTR AVFFLTAAGT
401: LKPIAIELCL PPMTDGCKRA KRVFTPPADA TSNWLWQLAK AHVCSNDAGV HQLINHWLRT HACMEPFIIA AHRQMSAMHP IFKLLKPHMR YTLKINALAR
501: QILINGDGVI ESGFTPGNVC MEMSAFAYRE LWRLDQEGLP ADLIRRGMAV EDPSQPHGLR LLIEDYPYAA DGLLLWSAIS RWCEAYVAAY YPSDEAVQAD
601: YELQSWYAEA VQSGHADKRG APWWPRLSTP GDLASLLTTL VWLCSAQHAA LNFGQYPLGG YIPNRPPLMR RLVPAEGDPE YAHLVADPHR FFLSALPSLT
701: QTTTFMTVID TLSTHSADEE YLGERPDEAW TADPAALAAA REFAADVRRA EEEIERRNAD PSRRNRCGAG VLPYELMAPS SGPGITCRGV PNSVTI
101: SNRPYLPSET PPGLRELRLR ELADLRGDGT GERRITDRVY DYDVYNDLGN PDKGVASARP VLGGEQMPYP RRMRTGRPST ATDASAESRV EYPEPIYVSR
201: DEEFEEGKNE MLSEGAIKAL LHNFMPLLVS SVSPDIRDFA GFHDVDNLFK EGLRLKQALH DQLFQKIPFV RKIQENSEGL LRYDTPDIIK KDKFAWLRDD
301: EFARQALAGI NPVNIERLQA FPPVSKLDPA VYGPPESAIT EEHIIGHLDG MSVQEAVEGS RLYMLDYHDI FLPFLDRINA QDGRKAYGTR AVFFLTAAGT
401: LKPIAIELCL PPMTDGCKRA KRVFTPPADA TSNWLWQLAK AHVCSNDAGV HQLINHWLRT HACMEPFIIA AHRQMSAMHP IFKLLKPHMR YTLKINALAR
501: QILINGDGVI ESGFTPGNVC MEMSAFAYRE LWRLDQEGLP ADLIRRGMAV EDPSQPHGLR LLIEDYPYAA DGLLLWSAIS RWCEAYVAAY YPSDEAVQAD
601: YELQSWYAEA VQSGHADKRG APWWPRLSTP GDLASLLTTL VWLCSAQHAA LNFGQYPLGG YIPNRPPLMR RLVPAEGDPE YAHLVADPHR FFLSALPSLT
701: QTTTFMTVID TLSTHSADEE YLGERPDEAW TADPAALAAA REFAADVRRA EEEIERRNAD PSRRNRCGAG VLPYELMAPS SGPGITCRGV PNSVTI
001: MALAKELMGY PLITERSSLV SSASHFKKRT QSTQFSINPF DRRPRKTKSG VVAAISEDLV KTLRFSTTTG DRKSEEEEKA AVKFKVRAVV TVRNKNKEDL
101: KETLVKHLDA FADKIGRNIV LELISTQLDP KTKLPKKSNA AVLKDWSKKS KTKAERVHYT AEFTVDAAFG SPGAITVMNK HQKEFFLESI TIEGFALGPV
201: HFPCNSWVQS QKDHPDKRIF FTNQPYLPNE TPSGLRVLRE KELKNLRGDG SGVRKLSDRI YDFDVYNDLG NPDKSSELSR PKLGGKEVPY PRRCRTGRQS
301: TVSDKDAESR VEKPLPMYVP RDEQFEESKQ DTFAAGRLKA VLHHLIPSLK ASIVAEDFAD FGEIDRLYKE GLLLKLGFQD DIFKKFPLPK VVVDTLQEST
401: KGLLKYDTPK ILSKDKNAWL RDDEFARQAI AGINPVNIER VKTFPPVSNL DPKIYGPQHS ALTDDHIIGH LDGFSVQQAL EENRLYMLDY HDIFLPFLDR
501: INALDGRKAY ATRTIFFLTR LGTLKPVAIE LSLPPHGPKH RSKRVLTPPV DATSNWMWQL AKAHVSSNDA GVHQLVNHWL RTHACLEPFI LAAHRQLSAM
601: HPIFKLLDPH MRYTLEINAL ARQSLISADG VIEGGFTAGA YGMEMSAAAY KSSWRFDMEG LPADLIRRGM AIPDATQPHG LKLLIEDYPY ANDGLLLWSA
701: IQTWVRTYVE RYYPNPNLIK TDSELQSWYS ESINVGHADL RDADWWPELS TVDDLVSILT TLIWLASAQH AALNFGQYPY GGYVPNRPPL MRRLIPDESD
801: PEYASFISHP EKYYFSSMPS LAQTSKFMAV VDTLSTHSPD EEYIGERQQP SIWTGDAEIV EAFYGFAAEI GRIEKEIEKR NADPDRRNRC GAGVLPYELL
901: VPSSEPGVTC RGVPNSVSI
101: KETLVKHLDA FADKIGRNIV LELISTQLDP KTKLPKKSNA AVLKDWSKKS KTKAERVHYT AEFTVDAAFG SPGAITVMNK HQKEFFLESI TIEGFALGPV
201: HFPCNSWVQS QKDHPDKRIF FTNQPYLPNE TPSGLRVLRE KELKNLRGDG SGVRKLSDRI YDFDVYNDLG NPDKSSELSR PKLGGKEVPY PRRCRTGRQS
301: TVSDKDAESR VEKPLPMYVP RDEQFEESKQ DTFAAGRLKA VLHHLIPSLK ASIVAEDFAD FGEIDRLYKE GLLLKLGFQD DIFKKFPLPK VVVDTLQEST
401: KGLLKYDTPK ILSKDKNAWL RDDEFARQAI AGINPVNIER VKTFPPVSNL DPKIYGPQHS ALTDDHIIGH LDGFSVQQAL EENRLYMLDY HDIFLPFLDR
501: INALDGRKAY ATRTIFFLTR LGTLKPVAIE LSLPPHGPKH RSKRVLTPPV DATSNWMWQL AKAHVSSNDA GVHQLVNHWL RTHACLEPFI LAAHRQLSAM
601: HPIFKLLDPH MRYTLEINAL ARQSLISADG VIEGGFTAGA YGMEMSAAAY KSSWRFDMEG LPADLIRRGM AIPDATQPHG LKLLIEDYPY ANDGLLLWSA
701: IQTWVRTYVE RYYPNPNLIK TDSELQSWYS ESINVGHADL RDADWWPELS TVDDLVSILT TLIWLASAQH AALNFGQYPY GGYVPNRPPL MRRLIPDESD
801: PEYASFISHP EKYYFSSMPS LAQTSKFMAV VDTLSTHSPD EEYIGERQQP SIWTGDAEIV EAFYGFAAEI GRIEKEIEKR NADPDRRNRC GAGVLPYELL
901: VPSSEPGVTC RGVPNSVSI
Arabidopsis Description
LOX3Lipoxygenase 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LNR3]
SUBAcon: [plastid,cytosol]
SUBAcon: [plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.