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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • plastid 1
  • mitochondrion 2
  • cytosol 3
PPI

Inferred distinct locusB in Crop

locusBlocations
Os03t0596900-01

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G17420.1 Os03t0596900-01 AT4G26630.1 25387881
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS2D01G313400.1 Wheat plastid 89.07 77.91
EES10882 Sorghum plastid 89.95 77.49
TraesCS2B01G333600.1 Wheat plastid 89.07 77.32
TraesCS2A01G315100.2 Wheat plastid 89.95 76.17
Zm00001d025524_P001 Maize plastid 88.44 75.78
Zm00001d003533_P001 Maize plastid 89.45 75.66
GSMUA_Achr3P07870_001 Banana plastid 73.74 66.78
GSMUA_Achr8P22700_001 Banana plastid 71.11 66.75
VIT_00s0265g00170.t01 Wine grape cytosol 41.96 66.14
GSMUA_Achr9P16020_001 Banana plastid 72.61 65.98
Os03t0179900-01 Rice plastid 69.97 60.68
CDY21750 Canola cytosol, mitochondrion, plastid 65.95 57.13
Bra030988.1-P Field mustard cytosol, mitochondrion, plastid 65.83 57.02
CDX81825 Canola cytosol 65.58 56.8
AT1G17420.1 Thale cress cytosol, plastid 65.58 56.8
CDY64617 Canola cytosol 65.45 56.69
Bra016602.1-P Field mustard cytosol 65.33 56.58
CDX96769 Canola cytosol 65.2 56.47
Solyc03g122340.2.1 Tomato cytosol 63.94 56.06
VIT_09s0002g01080.t01 Wine grape cytosol 65.2 55.99
PGSC0003DMT400058933 Potato plastid 64.07 55.8
AT1G72520.1 Thale cress plastid 64.07 55.08
Bra008037.1-P Field mustard plastid 63.57 55.06
CDY49853 Canola plastid 63.57 55.06
CDX82146 Canola plastid 58.67 54.94
KRH06197 Soybean nucleus 63.44 54.77
KRH47615 Soybean nucleus 63.69 54.69
KRG97300 Soybean plastid 61.43 54.39
Os12t0559934-00 Rice cytosol 13.32 54.36
KRH69027 Soybean plastid 61.06 53.94
KRH10882 Soybean cytosol 28.27 51.84
Os03t0700400-00 Rice cytosol, plasma membrane 8.04 50.79
KRH50048 Soybean cytosol 53.89 47.14
KRH21441 Soybean cytosol 53.02 46.37
Os08t0508800-01 Rice nucleus, plasma membrane 47.99 41.34
Os12t0560200-00 Rice cytosol 5.03 40.4
Os02t0194700-01 Rice plasma membrane 46.73 40.17
Os08t0509100-01 Rice nucleus 47.49 40.17
Os03t0699700-01 Rice cytosol, plastid 43.34 39.98
Os03t0738600-01 Rice plasma membrane, plastid 43.09 39.43
Os03t0700700-01 Rice cytosol, plasma membrane, plastid 43.22 39.22
Os05t0304600-01 Rice plastid 41.46 38.96
Os12t0559200-01 Rice plastid 44.1 38.07
Os11t0575600-01 Rice mitochondrion 40.58 37.21
Protein Annotations
Gene3D:1.20.245.10MapMan:11.7.1.2Gene3D:2.60.60.20Gene3D:3.10.450.60Gene3D:4.10.372.10Gene3D:4.10.375.10
UniProt:A0A0P0WB12ProteinID:BAS89410.1ncoils:CoilGO:GO:0003674GO:GO:0003824GO:GO:0005488
GO:GO:0005515GO:GO:0006629GO:GO:0006631GO:GO:0006633GO:GO:0008150GO:GO:0008152
GO:GO:0009058GO:GO:0009987GO:GO:0016165GO:GO:0016491GO:GO:0016702GO:GO:0031408
GO:GO:0046872GO:GO:0051213GO:GO:0055114InterPro:IPR001024InterPro:IPR013819InterPro:IPR027433
InterPro:LipOaseInterPro:LipOase_CInterPro:LipOase_CSInterPro:LipOase_C_sfInterPro:LipOase_Fe_BSInterPro:LipOase_plant
InterPro:Lipoxygenase_dom_3EnsemblPlantsGene:Os04g0447100EnsemblPlants:Os04t0447100-01PFAM:PF00305PFAM:PF01477InterPro:PLAT/LH2_dom
InterPro:PLAT/LH2_dom_sfPRINTS:PR00087PRINTS:PR00468ScanProsite:PS00081ScanProsite:PS00711PFscan:PS50095
PFscan:PS51393PANTHER:PTHR11771PANTHER:PTHR11771:SF67SMART:SM00308SUPFAM:SSF48484SUPFAM:SSF49723
UniParc:UPI000393ADA5SEG:seg::::
Description
LIPOXYGENASE 6Similar to Lipoxygenase. (Os04t0447100-01)
Coordinates
chr4:+:22305669..22309225
Molecular Weight (calculated)
89173.1 Da
IEP (calculated)
6.085
GRAVY (calculated)
-0.326
Length
796 amino acids
Sequence
(BLAST)
001: VYLLVWGFAG KGTPKKSKPS ALVGWFDKKD VKAERVVYTA EFAVDAGFGE PGAVTVLNRH QREFYIESIV VEGFPTGPAH FTCNSWVQPT RVSRDRRVFF
101: SNRPYLPSET PPGLRELRLR ELADLRGDGT GERRITDRVY DYDVYNDLGN PDKGVASARP VLGGEQMPYP RRMRTGRPST ATDASAESRV EYPEPIYVSR
201: DEEFEEGKNE MLSEGAIKAL LHNFMPLLVS SVSPDIRDFA GFHDVDNLFK EGLRLKQALH DQLFQKIPFV RKIQENSEGL LRYDTPDIIK KDKFAWLRDD
301: EFARQALAGI NPVNIERLQA FPPVSKLDPA VYGPPESAIT EEHIIGHLDG MSVQEAVEGS RLYMLDYHDI FLPFLDRINA QDGRKAYGTR AVFFLTAAGT
401: LKPIAIELCL PPMTDGCKRA KRVFTPPADA TSNWLWQLAK AHVCSNDAGV HQLINHWLRT HACMEPFIIA AHRQMSAMHP IFKLLKPHMR YTLKINALAR
501: QILINGDGVI ESGFTPGNVC MEMSAFAYRE LWRLDQEGLP ADLIRRGMAV EDPSQPHGLR LLIEDYPYAA DGLLLWSAIS RWCEAYVAAY YPSDEAVQAD
601: YELQSWYAEA VQSGHADKRG APWWPRLSTP GDLASLLTTL VWLCSAQHAA LNFGQYPLGG YIPNRPPLMR RLVPAEGDPE YAHLVADPHR FFLSALPSLT
701: QTTTFMTVID TLSTHSADEE YLGERPDEAW TADPAALAAA REFAADVRRA EEEIERRNAD PSRRNRCGAG VLPYELMAPS SGPGITCRGV PNSVTI
Best Arabidopsis Sequence Match ( AT1G17420.1 )
(BLAST)
001: MALAKELMGY PLITERSSLV SSASHFKKRT QSTQFSINPF DRRPRKTKSG VVAAISEDLV KTLRFSTTTG DRKSEEEEKA AVKFKVRAVV TVRNKNKEDL
101: KETLVKHLDA FADKIGRNIV LELISTQLDP KTKLPKKSNA AVLKDWSKKS KTKAERVHYT AEFTVDAAFG SPGAITVMNK HQKEFFLESI TIEGFALGPV
201: HFPCNSWVQS QKDHPDKRIF FTNQPYLPNE TPSGLRVLRE KELKNLRGDG SGVRKLSDRI YDFDVYNDLG NPDKSSELSR PKLGGKEVPY PRRCRTGRQS
301: TVSDKDAESR VEKPLPMYVP RDEQFEESKQ DTFAAGRLKA VLHHLIPSLK ASIVAEDFAD FGEIDRLYKE GLLLKLGFQD DIFKKFPLPK VVVDTLQEST
401: KGLLKYDTPK ILSKDKNAWL RDDEFARQAI AGINPVNIER VKTFPPVSNL DPKIYGPQHS ALTDDHIIGH LDGFSVQQAL EENRLYMLDY HDIFLPFLDR
501: INALDGRKAY ATRTIFFLTR LGTLKPVAIE LSLPPHGPKH RSKRVLTPPV DATSNWMWQL AKAHVSSNDA GVHQLVNHWL RTHACLEPFI LAAHRQLSAM
601: HPIFKLLDPH MRYTLEINAL ARQSLISADG VIEGGFTAGA YGMEMSAAAY KSSWRFDMEG LPADLIRRGM AIPDATQPHG LKLLIEDYPY ANDGLLLWSA
701: IQTWVRTYVE RYYPNPNLIK TDSELQSWYS ESINVGHADL RDADWWPELS TVDDLVSILT TLIWLASAQH AALNFGQYPY GGYVPNRPPL MRRLIPDESD
801: PEYASFISHP EKYYFSSMPS LAQTSKFMAV VDTLSTHSPD EEYIGERQQP SIWTGDAEIV EAFYGFAAEI GRIEKEIEKR NADPDRRNRC GAGVLPYELL
901: VPSSEPGVTC RGVPNSVSI
Arabidopsis Description
LOX3Lipoxygenase 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LNR3]
SUBAcon: [plastid,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.