Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- plastid 2
- mitochondrion 3
- cytosol 3
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os03t0262400-01 | |
| Os10t0467600-01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G45140.1 | Os03t0262400-01 | AT5G18110.1 | 11117257 |
| AT3G45140.1 | Os10t0467600-01 | AT5G35620.1 | 11117257 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY70843 | Canola | cytosol | 41.41 | 32.54 |
| TraesCS7D01G029400.1 | Wheat | cytosol | 57.58 | 21.51 |
| TraesCS7A01G034900.1 | Wheat | mitochondrion | 55.56 | 18.77 |
| VIT_13s0064g01500.t01 | Wine grape | cytosol | 46.46 | 18.4 |
| CDY72550 | Canola | cytosol | 41.41 | 12.77 |
| CDY61881 | Canola | cytosol | 42.42 | 11.83 |
| CDY07409 | Canola | cytosol | 42.42 | 10.85 |
| Solyc01g009680.2.1 | Tomato | plastid | 42.42 | 9.48 |
| Os12t0559200-01 | Rice | plastid | 86.87 | 9.33 |
| CDY61034 | Canola | cytosol | 41.41 | 9.17 |
| TraesCS6B01G014400.1 | Wheat | cytosol | 52.53 | 8.65 |
| VIT_06s0004g01460.t01 | Wine grape | plastid | 41.41 | 6.86 |
| TraesCS5D01G013400.1 | Wheat | plastid | 57.58 | 6.14 |
| TraesCS5B01G033000.1 | Wheat | plastid | 58.59 | 6.11 |
| TraesCS5B01G006500.1 | Wheat | plastid | 56.57 | 6.03 |
| TraesCS5A01G007900.1 | Wheat | plastid | 56.57 | 6.03 |
| TraesCS5D01G041100.1 | Wheat | plastid | 57.58 | 6.03 |
| HORVU5Hr1G001180.1 | Barley | plastid | 55.56 | 5.91 |
| Os02t0194700-01 | Rice | plasma membrane | 54.55 | 5.83 |
| HORVU6Hr1G000510.1 | Barley | plastid | 54.55 | 5.79 |
| TraesCS6D01G010100.1 | Wheat | plastid | 54.55 | 5.75 |
| HORVU7Hr1G006320.4 | Barley | plastid | 53.54 | 5.72 |
| VIT_06s0004g01500.t01 | Wine grape | cytosol | 44.44 | 5.56 |
| Bra022535.1-P | Field mustard | plastid | 45.45 | 5.55 |
| VIT_06s0004g01480.t01 | Wine grape | cytosol | 44.44 | 5.55 |
| PGSC0003DMT400020118 | Potato | cytosol | 38.38 | 5.48 |
| VIT_06s0004g01510.t01 | Wine grape | plastid | 47.47 | 5.22 |
| VIT_13s0064g01480.t01 | Wine grape | plastid | 47.47 | 5.2 |
| KRG89883 | Soybean | cytosol, plastid | 44.44 | 5.12 |
| CDX91565 | Canola | plastid | 46.46 | 5.11 |
| Os04t0447100-01 | Rice | cytosol | 40.4 | 5.03 |
| AT3G45140.1 | Thale cress | plastid | 45.45 | 5.02 |
| Bra003526.1-P | Field mustard | plastid | 45.45 | 4.98 |
| CDX67920 | Canola | plastid | 45.45 | 4.98 |
| VIT_06s0004g01450.t01 | Wine grape | cytosol, extracellular | 42.42 | 4.89 |
| KRG89889 | Soybean | cytosol, plastid | 42.42 | 4.88 |
| KRH29669 | Soybean | plastid | 44.44 | 4.88 |
| CDX79416 | Canola | plastid | 44.44 | 4.87 |
| KRH18682 | Soybean | cytosol, mitochondrion | 44.44 | 4.83 |
| KRH17965 | Soybean | plastid | 44.44 | 4.79 |
| VIT_06s0004g01470.t01 | Wine grape | cytosol | 43.43 | 4.76 |
| KRH29668 | Soybean | nucleus | 43.43 | 4.75 |
| Bra004059.1-P | Field mustard | plastid | 41.41 | 4.73 |
| KRH24671 | Soybean | cytosol, plastid | 43.43 | 4.7 |
| Solyc01g006560.2.1 | Tomato | plastid | 42.42 | 4.66 |
| KRG89888 | Soybean | nucleus | 42.42 | 4.65 |
| CDY04196 | Canola | plastid | 41.41 | 4.61 |
| CDY61036 | Canola | plastid | 41.41 | 4.61 |
| Bra004057.1-P | Field mustard | cytosol | 41.41 | 4.6 |
| Solyc01g006540.2.1 | Tomato | plastid | 41.41 | 4.58 |
| PGSC0003DMT400081909 | Potato | plastid | 41.41 | 4.56 |
| Bra004060.1-P | Field mustard | plastid | 41.41 | 4.56 |
| TraesCS5A01G032800.1 | Wheat | mitochondrion | 39.39 | 4.54 |
| Solyc12g011040.1.1 | Tomato | nucleus, plastid | 39.39 | 4.37 |
| Os03t0179900-01 | Rice | plastid | 39.39 | 4.25 |
| Os08t0508800-01 | Rice | nucleus, plasma membrane | 39.39 | 4.22 |
| Os05t0304600-01 | Rice | plastid | 35.35 | 4.13 |
| Os08t0509100-01 | Rice | nucleus | 38.38 | 4.04 |
| Os03t0738600-01 | Rice | plasma membrane, plastid | 35.35 | 4.02 |
| Bra004058.1-P | Field mustard | plastid | 42.42 | 3.97 |
| Os03t0699700-01 | Rice | cytosol, plastid | 33.33 | 3.82 |
| Os03t0700700-01 | Rice | cytosol, plasma membrane, plastid | 33.33 | 3.76 |
| CDY07407 | Canola | cytosol, plastid | 41.41 | 3.74 |
| Os11t0575600-01 | Rice | mitochondrion | 31.31 | 3.57 |
| CDY70606 | Canola | plastid | 3.03 | 0.76 |
| Os12t0559934-00 | Rice | cytosol | 0.0 | 0.0 |
| VIT_13s0064g01490.t01 | Wine grape | cytosol | 0.0 | 0.0 |
| Os03t0700400-00 | Rice | cytosol, plasma membrane | 0.0 | 0.0 |
| CDY07408 | Canola | plastid | 0.0 | 0.0 |
| CDY16339 | Canola | plastid | 0.0 | 0.0 |
| CDY61880 | Canola | plastid | 0.0 | 0.0 |
| CDY61882 | Canola | plastid | 0.0 | 0.0 |
| CDY70245 | Canola | plastid | 0.0 | 0.0 |
| HORVU3Hr1G047210.1 | Barley | cytosol | 0.0 | 0.0 |
Protein Annotations
| Gene3D:1.20.245.10 | MapMan:35.1 | ProteinID:BAT17635.1 | UniProt:C0L8H3 | EMBL:FJ667775 | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0005488 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0016491 | GO:GO:0016702 |
| GO:GO:0046872 | GO:GO:0055114 | InterPro:IPR013819 | InterPro:LipOase | InterPro:LipOase_C | InterPro:LipOase_C_sf |
| EnsemblPlantsGene:Os12g0560200 | EnsemblPlants:Os12t0560200-00 | PFAM:PF00305 | PFscan:PS51393 | PANTHER:PTHR11771 | PANTHER:PTHR11771:SF89 |
| SUPFAM:SSF48484 | UniParc:UPI000195FB68 | SEG:seg | : | : | : |
Description
LIPOXYGENASE 12Similar to Lipoxygenase. (Os12t0560200-00)
Coordinates
chr12:+:22936472..22936772
Molecular Weight (calculated)
11475.7 Da
IEP (calculated)
9.123
GRAVY (calculated)
-0.629
Length
99 amino acids
Sequence
(BLAST)
(BLAST)
1: PVRVLLDTFP SQYQTTLILP ALNLLSSHSP SEEYMGTHTE AAWMANREVR AAFGRFNERM MRIAETIDRR NRDPERRNRW GPGVVPYVLL KPCYGDPKD
001: MPEDFGPVGA IKIQNQYHRQ LFLKGVELKL PGGSITFTCE SWVAPKSVDP TKRIFFSDKS YLPSQTPEPL KKYRKEELET LQGKNREEVG EFTKFERIYD
101: YDVYNDVGDP DNDPELARPV IGGLTHPYPR RCKTGRKPCE TDPSSEQRYG GEFYVPRDEE FSTAKGTSFT GKAVLAALPS IFPQIESVLL SPQEPFPHFK
201: AIQNLFEEGI QLPKDAGLLP LLPRIIKALG EAQDDILQFD APVLINRDRF SWLRDDEFAR QTLAGLNPYS IQLVEEWPLI SKLDPAVYGD PTSLITWEIV
301: EREVKGNMTV DEALKNKRLF VLDYHDLLLP YVNKVRELNN TTLYASRTLF FLSDDSTLRP VAIELTCPPN INKPQWKQVF TPGYDATSCW LWNLAKTHAI
401: SHDAGYHQLI SHWLRTHACT EPYIIAANRQ LSAMHPIYRL LHPHFRYTME INARARQSLV NGGGIIETCF WPGKYALELS SAVYGKLWRF DQEGLPADLI
501: KRGLAEEDKT AEHGVRLTIP DYPFANDGLI LWDAIKEWVT DYVKHYYPDE ELITSDEELQ GWWSEVRNIG HGDKKDEPWW PVLKTQDDLI GVVTTIAWVT
601: SGHHAAVNFG QYGYGGYFPN RPTTTRIRMP TEDPTDEALK EFYESPEKVL LKTYPSQKQA TLVMVTLDLL STHSPDEEYI GEQQEASWAN EPVINAAFER
701: FKGKLQYLEG VIDERNVNIT LKNRAGAGVV KYELLKPTSE HGVTGMGVPY SISI
101: YDVYNDVGDP DNDPELARPV IGGLTHPYPR RCKTGRKPCE TDPSSEQRYG GEFYVPRDEE FSTAKGTSFT GKAVLAALPS IFPQIESVLL SPQEPFPHFK
201: AIQNLFEEGI QLPKDAGLLP LLPRIIKALG EAQDDILQFD APVLINRDRF SWLRDDEFAR QTLAGLNPYS IQLVEEWPLI SKLDPAVYGD PTSLITWEIV
301: EREVKGNMTV DEALKNKRLF VLDYHDLLLP YVNKVRELNN TTLYASRTLF FLSDDSTLRP VAIELTCPPN INKPQWKQVF TPGYDATSCW LWNLAKTHAI
401: SHDAGYHQLI SHWLRTHACT EPYIIAANRQ LSAMHPIYRL LHPHFRYTME INARARQSLV NGGGIIETCF WPGKYALELS SAVYGKLWRF DQEGLPADLI
501: KRGLAEEDKT AEHGVRLTIP DYPFANDGLI LWDAIKEWVT DYVKHYYPDE ELITSDEELQ GWWSEVRNIG HGDKKDEPWW PVLKTQDDLI GVVTTIAWVT
601: SGHHAAVNFG QYGYGGYFPN RPTTTRIRMP TEDPTDEALK EFYESPEKVL LKTYPSQKQA TLVMVTLDLL STHSPDEEYI GEQQEASWAN EPVINAAFER
701: FKGKLQYLEG VIDERNVNIT LKNRAGAGVV KYELLKPTSE HGVTGMGVPY SISI
Arabidopsis Description
LOX2Lipoxygenase 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P38418]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.