Factsheet for TraesCS5B01G033000.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G149200.1
TraesCS1B01G167100.1
TraesCS1D01G146500.1
TraesCS4A01G087900.1
TraesCS4B01G216300.1
TraesCS4D01G216800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G45140.1	TraesCS4A01G087900.1	AT5G18110.1	11117257
AT3G45140.1	TraesCS4B01G216300.1	AT5G18110.1	11117257
AT3G45140.1	TraesCS4D01G216800.1	AT5G18110.1	11117257
AT3G45140.1	TraesCS1A01G149200.1	AT5G35620.1	11117257
AT3G45140.1	TraesCS1B01G167100.1	AT5G35620.1	11117257
AT3G45140.1	TraesCS1D01G146500.1	AT5G35620.1	11117257

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G041100.1	Wheat	plastid	89.89	90.37
Os12t0559934-00	Rice	cytosol	17.16	83.59
TraesCS5A01G032800.1	Wheat	mitochondrion	69.58	76.95
TraesCS6B01G014400.1	Wheat	cytosol	42.74	67.55
TraesCS5B01G006500.1	Wheat	plastid	61.26	62.72
CDY61034	Canola	cytosol	28.63	60.85
Solyc01g009680.2.1	Tomato	plastid	28.11	60.27
CDY07409	Canola	cytosol	24.42	59.95
Os12t0559200-01	Rice	plastid	57.05	58.79
Os12t0560200-00	Rice	cytosol	6.11	58.59
CDY72550	Canola	cytosol	19.79	58.57
VIT_13s0064g01500.t01	Wine grape	cytosol	14.84	56.4
VIT_13s0064g01490.t01	Wine grape	cytosol	23.68	56.39
VIT_06s0004g01460.t01	Wine grape	plastid	34.32	54.52
CDY61881	Canola	cytosol	20.32	54.37
VIT_06s0004g01480.t01	Wine grape	cytosol	44.32	53.09
VIT_06s0004g01500.t01	Wine grape	cytosol	44.11	52.97
PGSC0003DMT400020118	Potato	cytosol	38.21	52.38
TraesCS6B01G193400.1	Wheat	plastid	48.11	50.72
VIT_13s0064g01480.t01	Wine grape	plastid	47.05	49.5
VIT_06s0004g01450.t01	Wine grape	cytosol, extracellular	43.79	48.43
CDY70843	Canola	cytosol	6.42	48.41
Solyc01g006560.2.1	Tomato	plastid	45.58	48.0
VIT_06s0004g01510.t01	Wine grape	plastid	45.47	47.95
CDY04196	Canola	plastid	44.53	47.58
Solyc01g006540.2.1	Tomato	plastid	44.84	47.54
KRH29668	Soybean	nucleus	45.26	47.46
VIT_06s0004g01470.t01	Wine grape	cytosol	45.05	47.4
KRH24671	Soybean	cytosol, plastid	45.58	47.37
KRH29669	Soybean	plastid	44.84	47.28
PGSC0003DMT400081909	Potato	plastid	44.74	47.27
KRG89883	Soybean	cytosol, plastid	42.53	47.03
CDX91565	Canola	plastid	44.53	47.0
KRH17965	Soybean	plastid	45.37	46.95
CDX79416	Canola	plastid	44.42	46.68
KRG89889	Soybean	cytosol, plastid	42.21	46.63
CDX67920	Canola	plastid	44.21	46.46
Bra003526.1-P	Field mustard	plastid	44.11	46.35
TraesCS7B01G145200.1	Wheat	plastid	45.26	46.34
AT3G45140.1	Thale cress	plastid	43.68	46.32
Bra004060.1-P	Field mustard	plastid	43.68	46.16
Bra004057.1-P	Field mustard	cytosol	43.26	46.13
CDY61036	Canola	plastid	43.05	46.01
Bra004059.1-P	Field mustard	plastid	41.68	45.73
CDY16339	Canola	plastid	36.53	45.6
KRG89888	Soybean	nucleus	43.26	45.51
Solyc12g011040.1.1	Tomato	nucleus, plastid	42.63	45.4
KRH18682	Soybean	cytosol, mitochondrion	43.26	45.12
Bra022535.1-P	Field mustard	plastid	36.84	43.16
TraesCS2B01G333600.1	Wheat	plastid	38.21	39.59
TraesCS4B01G295200.1	Wheat	plastid	37.47	38.57
TraesCS5B01G382600.1	Wheat	cytosol	34.95	38.56
Bra004058.1-P	Field mustard	plastid	42.84	38.47
TraesCS4B01G037900.1	Wheat	cytosol, golgi, nucleus, plastid, unclear	34.53	38.1
TraesCS5B01G382400.1	Wheat	cytosol, golgi	34.21	37.97
CDY07407	Canola	cytosol, plastid	43.79	37.92
TraesCS1B01G226400.1	Wheat	cytosol	33.47	37.68
CDY61880	Canola	plastid	21.79	37.57
TraesCS4B01G037700.3	Wheat	cytosol, golgi	33.79	37.28
TraesCS5B01G382300.1	Wheat	cytosol, unclear	33.79	37.15
TraesCS3B01G602500.1	Wheat	cytosol	34.42	37.12
TraesCS3B01G605700.1	Wheat	cytosol	34.11	36.61
TraesCS4B01G037800.1	Wheat	cytosol	33.79	36.56
TraesCS6B01G160400.1	Wheat	mitochondrion	33.47	36.43
TraesCS6B01G395700.1	Wheat	cytosol	28.63	33.5
CDY70245	Canola	plastid	15.89	32.97
TraesCS2B01G555400.2	Wheat	mitochondrion, plastid	31.16	31.93
CDY07408	Canola	plastid	15.16	31.44
CDY70606	Canola	plastid	12.84	30.89
CDY61882	Canola	plastid	11.68	28.68

Protein Annotations

Gene3D:1.20.245.10	MapMan:11.7.1.2	Gene3D:2.60.60.20	Gene3D:3.10.450.60	Gene3D:4.10.375.10	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491
GO:GO:0016702	GO:GO:0046872	GO:GO:0055114	InterPro:IPR001024	InterPro:IPR013819	InterPro:LipOase
InterPro:LipOase_C	InterPro:LipOase_CS	InterPro:LipOase_C_sf	InterPro:LipOase_Fe_BS	InterPro:LipOase_plant	PFAM:PF00305
InterPro:PLAT/LH2_dom	InterPro:PLAT/LH2_dom_sf	PRINTS:PR00087	PRINTS:PR00468	ScanProsite:PS00081	ScanProsite:PS00711
PFscan:PS50095	PFscan:PS51393	PANTHER:PTHR11771	PANTHER:PTHR11771:SF89	SMART:SM00308	SUPFAM:SSF48484
SUPFAM:SSF49723	EnsemblPlantsGene:TraesCS5B01G033000	EnsemblPlants:TraesCS5B01G033000.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr5B:-:36236719..36241171

Molecular Weight (calculated)

108092.0 Da

IEP (calculated)

6.285

GRAVY (calculated)

-0.439

Length

950 amino acids

Sequence
(BLAST)

001: MAAMPLALGA PSHHGSSSFS STVSSVRRAV PVPEARRTSS NARHTVSTVG CTATATATTT TITTTTLPEA DTVAHRATPR GFNLTLSNIE MKATVTVHMK
101: SFWSGLEKIT SLSEKAAWVY HWTNDLLHRE WLQLELVSES NPEEREDPSY AKYSGTGADE EFYTFEATFT VPASFSPIGA VRVVNDHYNE MLLGDVRIFP
201: ADQGPKSSSA TLFHCNSWIH PSRSSNDKRT FFPVTYSYLP SKTPEGMKRL RRSELLAIRG DGTGERKPHQ RIYDYDVYND LGNKRPVLGG EKRPYPRRCR
301: TGRGHYMQGE DAPSEVRATD KIYVPRDEAF TEIKDAAFIR ELVLSAAHAA CTVEFKDMKD HRSQSFPSLA AIDALYDVDF TNQPSQSQPH TQAEIVGVVI
401: GFVVDELERL LHGAHLSEEI CRFLKFETPE IHDKDKFAWF RDEEFARQTL AGMNPLSIQL VTELPIVSKL DGPSLITKEL IEEQINGVMT AEEAIRRKKL
501: FILDYHDMFL PFVHKVRMLE DTTLYGSRTL FFLTGDGTLR PIAIELTRPE SQDHGRRNSP SPTKDEWRQV FTPGSSVTES WLWQLAKSHV LAHDTGYHQL
601: VSHWLRTHCC VEPYIIAANR QLSQMHPIYQ LLHPHFRYTM EINAQARQML VNAGGIIEST FSPGRYCMEL SSVVYDKFWR FDMEALPEDL IRRGMAVRGE
701: DGKLELAIED YPYATDGLMV WDAIKQWASD YVKHYYKCAK DIIDDQELQG WWTEVRTKGH EDKKDEPWWP VLDSHESLVQ VLATIMWVTS AHHAAVNFGQ
801: YPLAGYVPNR PTTTRKNMPS EMVGPDSKEM RKFLEEPERV LLDTFPSQYQ SVLVMLILNL LSSHSPDEEY MATYAELVWR QEEEIKEAFD RFKSKMIDIA
901: VQIDKANMDS KLKNRNGPGV VPYVLLRPSN GHPEDEKTVM GMGIPYSISI

Best Arabidopsis Sequence Match ( AT1G17420.1 )
(BLAST)

001: MALAKELMGY PLITERSSLV SSASHFKKRT QSTQFSINPF DRRPRKTKSG VVAAISEDLV KTLRFSTTTG DRKSEEEEKA AVKFKVRAVV TVRNKNKEDL
101: KETLVKHLDA FADKIGRNIV LELISTQLDP KTKLPKKSNA AVLKDWSKKS KTKAERVHYT AEFTVDAAFG SPGAITVMNK HQKEFFLESI TIEGFALGPV
201: HFPCNSWVQS QKDHPDKRIF FTNQPYLPNE TPSGLRVLRE KELKNLRGDG SGVRKLSDRI YDFDVYNDLG NPDKSSELSR PKLGGKEVPY PRRCRTGRQS
301: TVSDKDAESR VEKPLPMYVP RDEQFEESKQ DTFAAGRLKA VLHHLIPSLK ASIVAEDFAD FGEIDRLYKE GLLLKLGFQD DIFKKFPLPK VVVDTLQEST
401: KGLLKYDTPK ILSKDKNAWL RDDEFARQAI AGINPVNIER VKTFPPVSNL DPKIYGPQHS ALTDDHIIGH LDGFSVQQAL EENRLYMLDY HDIFLPFLDR
501: INALDGRKAY ATRTIFFLTR LGTLKPVAIE LSLPPHGPKH RSKRVLTPPV DATSNWMWQL AKAHVSSNDA GVHQLVNHWL RTHACLEPFI LAAHRQLSAM
601: HPIFKLLDPH MRYTLEINAL ARQSLISADG VIEGGFTAGA YGMEMSAAAY KSSWRFDMEG LPADLIRRGM AIPDATQPHG LKLLIEDYPY ANDGLLLWSA
701: IQTWVRTYVE RYYPNPNLIK TDSELQSWYS ESINVGHADL RDADWWPELS TVDDLVSILT TLIWLASAQH AALNFGQYPY GGYVPNRPPL MRRLIPDESD
801: PEYASFISHP EKYYFSSMPS LAQTSKFMAV VDTLSTHSPD EEYIGERQQP SIWTGDAEIV EAFYGFAAEI GRIEKEIEKR NADPDRRNRC GAGVLPYELL
901: VPSSEPGVTC RGVPNSVSI

Arabidopsis Description

LOX3Lipoxygenase 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LNR3]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.