Factsheet for TraesCS5D01G041100.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G149200.1
TraesCS1B01G167100.1
TraesCS1D01G146500.1
TraesCS4A01G087900.1
TraesCS4B01G216300.1
TraesCS4D01G216800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G45140.1	TraesCS4A01G087900.1	AT5G18110.1	11117257
AT3G45140.1	TraesCS4B01G216300.1	AT5G18110.1	11117257
AT3G45140.1	TraesCS4D01G216800.1	AT5G18110.1	11117257
AT3G45140.1	TraesCS1A01G149200.1	AT5G35620.1	11117257
AT3G45140.1	TraesCS1B01G167100.1	AT5G35620.1	11117257
AT3G45140.1	TraesCS1D01G146500.1	AT5G35620.1	11117257

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G033000.1	Wheat	plastid	90.37	89.89
Os12t0559934-00	Rice	cytosol	17.25	83.59
TraesCS5A01G032800.1	Wheat	mitochondrion	68.47	75.32
TraesCS7D01G029400.1	Wheat	cytosol	20.0	71.32
TraesCS5D01G013400.1	Wheat	plastid	61.8	62.93
TraesCS6D01G010100.1	Wheat	plastid	60.85	61.24
CDY61034	Canola	cytosol	28.89	61.07
Solyc01g009680.2.1	Tomato	plastid	28.25	60.27
CDY07409	Canola	cytosol	24.23	59.17
CDY72550	Canola	cytosol	19.79	58.26
Os12t0559200-01	Rice	plastid	56.19	57.59
Os12t0560200-00	Rice	cytosol	6.03	57.58
VIT_13s0064g01490.t01	Wine grape	cytosol	24.13	57.14
VIT_13s0064g01500.t01	Wine grape	cytosol	14.92	56.4
VIT_06s0004g01460.t01	Wine grape	plastid	34.5	54.52
VIT_06s0004g01480.t01	Wine grape	cytosol	45.29	53.97
VIT_06s0004g01500.t01	Wine grape	cytosol	44.66	53.35
CDY61881	Canola	cytosol	19.89	52.96
PGSC0003DMT400020118	Potato	cytosol	37.67	51.37
TraesCS6D01G154600.1	Wheat	plastid	48.57	50.94
VIT_13s0064g01480.t01	Wine grape	plastid	48.15	50.39
VIT_06s0004g01450.t01	Wine grape	cytosol, extracellular	44.13	48.54
VIT_06s0004g01470.t01	Wine grape	cytosol	46.03	48.17
VIT_06s0004g01510.t01	Wine grape	plastid	45.93	48.17
TraesCS4D01G347300.1	Wheat	cytosol	44.87	47.91
KRH29668	Soybean	nucleus	45.71	47.68
Solyc01g006560.2.1	Tomato	plastid	45.5	47.67
CDY70843	Canola	cytosol	6.35	47.62
KRG89883	Soybean	cytosol, plastid	43.28	47.61
KRH24671	Soybean	cytosol, plastid	46.03	47.59
KRH17965	Soybean	plastid	46.03	47.39
Solyc01g006540.2.1	Tomato	plastid	44.87	47.32
KRH29669	Soybean	plastid	45.08	47.28
CDY04196	Canola	plastid	44.44	47.24
KRG89889	Soybean	cytosol, plastid	42.96	47.21
PGSC0003DMT400081909	Potato	plastid	44.87	47.16
TraesCS7D01G244800.1	Wheat	plastid	46.14	46.78
CDX91565	Canola	plastid	44.55	46.78
CDX79416	Canola	plastid	44.23	46.24
TraesCS6D01G122000.1	Wheat	cytosol	15.13	46.13
AT3G45140.1	Thale cress	plastid	43.7	46.09
CDX67920	Canola	plastid	44.02	46.02
Bra004057.1-P	Field mustard	cytosol	43.39	46.02
Bra004060.1-P	Field mustard	plastid	43.7	45.94
Bra003526.1-P	Field mustard	plastid	43.92	45.91
KRG89888	Soybean	nucleus	43.81	45.85
CDY16339	Canola	plastid	36.83	45.73
Bra004059.1-P	Field mustard	plastid	41.9	45.73
CDY61036	Canola	plastid	42.96	45.67
KRH18682	Soybean	cytosol, mitochondrion	43.7	45.33
Solyc12g011040.1.1	Tomato	nucleus, plastid	42.43	44.96
Bra022535.1-P	Field mustard	plastid	37.35	43.53
TraesCS2D01G313400.1	Wheat	plastid	39.05	40.55
TraesCS4D01G294100.1	Wheat	plastid	37.88	38.83
Bra004058.1-P	Field mustard	plastid	42.86	38.28
CDY61880	Canola	plastid	22.12	37.93
CDY07407	Canola	cytosol, plastid	43.92	37.83
TraesCS1D01G215800.2	Wheat	cytosol	33.86	37.83
TraesCS4D01G035200.1	Wheat	cytosol	32.91	37.52
TraesCS5D01G388700.1	Wheat	cytosol, golgi, unclear	34.18	37.38
TraesCS5D01G388800.1	Wheat	cytosol	35.24	37.12
TraesCS5D01G513100.1	Wheat	cytosol	33.86	36.87
TraesCS4D01G035100.1	Wheat	cytosol	34.18	36.79
CDY70245	Canola	plastid	16.08	33.19
TraesCS2D01G528400.1	Wheat	cytosol, mitochondrion	31.53	32.68
TraesCS2D01G528500.1	Wheat	mitochondrion, plastid	31.85	32.47
CDY07408	Canola	plastid	15.34	31.66
CDY70606	Canola	plastid	13.02	31.14
CDY61882	Canola	plastid	12.06	29.46
TraesCS6D01G121900.1	Wheat	mitochondrion	13.02	27.52

Protein Annotations

Gene3D:1.20.245.10	MapMan:11.7.1.2	Gene3D:2.60.60.20	Gene3D:3.10.450.60	Gene3D:4.10.372.10	Gene3D:4.10.375.10
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0008150	GO:GO:0008152
GO:GO:0016491	GO:GO:0016702	GO:GO:0046872	GO:GO:0055114	InterPro:IPR001024	InterPro:IPR013819
InterPro:IPR027433	InterPro:LipOase	InterPro:LipOase_C	InterPro:LipOase_CS	InterPro:LipOase_C_sf	InterPro:LipOase_Fe_BS
InterPro:LipOase_plant	InterPro:Lipoxygenase_dom_3	PFAM:PF00305	InterPro:PLAT/LH2_dom	InterPro:PLAT/LH2_dom_sf	PRINTS:PR00087
PRINTS:PR00468	ScanProsite:PS00081	ScanProsite:PS00711	PFscan:PS50095	PFscan:PS51393	PANTHER:PTHR11771
PANTHER:PTHR11771:SF89	SMART:SM00308	SUPFAM:SSF48484	SUPFAM:SSF49723	EnsemblPlantsGene:TraesCS5D01G041100	EnsemblPlants:TraesCS5D01G041100.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr5D:-:41603887..41608368

Molecular Weight (calculated)

107720.0 Da

IEP (calculated)

6.322

GRAVY (calculated)

-0.439

Length

945 amino acids

Sequence
(BLAST)

001: MAAMPLALGA PSHHGSSSFS STVSSVRRAV PVPEARRTSS NARHRVSTVG CTATATATTT TLSEVDTVGH RAAPRGFNLT SSNIKMKATV TVHMKSFWSG
101: LLEITSLSDK ADWLYHWTKD LLVREWLQLE LVSELNPEHP ISSYAKYSGT GADEEFYTYE ATFTVPASFC PIGAVRVVNE HYSEMFLGEV RIFPADQSPL
201: SASATLFHCN SWIHPSHISP DKPRTFFPVT YSYLPSKTPG GMKKLRHSEL LDIRGNGTDE RKPHDRIYDY DVYNDLGNKR PVLGGEKRPY PRRCRTGRPH
301: YTQGQDTDWE TRATDKIYVP RDEAFTEIKE AAFLRELVLS VGHSLCTLKF KDMEDHKSQS FPSLAAIDAL YEVDFRNQPS QSQPHTHAEI AGVMIGFVVD
401: ELERLLHGAH LPEEICRFLK FETPEIHDKD KFAWFRDEEF ARETLAGMNP LSIQLVTELP IVSEVDGPSL ITKELIEEQI NGVMTAEEAM RRKKLFMLDY
501: HDMFLPFVHK VRMLEDTTLY GSRTLFFLTG DGTLRPIAIE LTRPESQDHG RRSSPSPTKD EWRQVFTPGS SVTESWLWQL AKSHVLAHDT GYHQLVSHWL
601: RTHCCVEPYI IAANRQLSRM HPIYQLLHPH FRYTMEINAQ ARQMLIDAGG IIESAFSPGR YCMELSSVAY DKFWRFDMEA LPEDLIRRGM AVRGEDGKLE
701: LAIEDYPYAN DGLMVWDAIK QWASDYVKYY YPGAKDIIDD HELQGWWTEV RTKGHEDKKD EPWWPVLDSH ESLVQVLATI MWVTSAHHAA VNFGQYPLAG
801: YIPNRPTTTR KNMPPEMGGP DSKEMRAFLE EPERVLLDTF PSQYQSVIVM LILNLLSSHS SDEEYMGTYQ ELVWRKEEKI KEAFDRFKSK MVDIAAQIDK
901: ANMDPKLKNR NGPGVVPYVL LRPSNGHPED EKTVMGLGIP YSISI

Best Arabidopsis Sequence Match ( AT1G17420.1 )
(BLAST)

001: MALAKELMGY PLITERSSLV SSASHFKKRT QSTQFSINPF DRRPRKTKSG VVAAISEDLV KTLRFSTTTG DRKSEEEEKA AVKFKVRAVV TVRNKNKEDL
101: KETLVKHLDA FADKIGRNIV LELISTQLDP KTKLPKKSNA AVLKDWSKKS KTKAERVHYT AEFTVDAAFG SPGAITVMNK HQKEFFLESI TIEGFALGPV
201: HFPCNSWVQS QKDHPDKRIF FTNQPYLPNE TPSGLRVLRE KELKNLRGDG SGVRKLSDRI YDFDVYNDLG NPDKSSELSR PKLGGKEVPY PRRCRTGRQS
301: TVSDKDAESR VEKPLPMYVP RDEQFEESKQ DTFAAGRLKA VLHHLIPSLK ASIVAEDFAD FGEIDRLYKE GLLLKLGFQD DIFKKFPLPK VVVDTLQEST
401: KGLLKYDTPK ILSKDKNAWL RDDEFARQAI AGINPVNIER VKTFPPVSNL DPKIYGPQHS ALTDDHIIGH LDGFSVQQAL EENRLYMLDY HDIFLPFLDR
501: INALDGRKAY ATRTIFFLTR LGTLKPVAIE LSLPPHGPKH RSKRVLTPPV DATSNWMWQL AKAHVSSNDA GVHQLVNHWL RTHACLEPFI LAAHRQLSAM
601: HPIFKLLDPH MRYTLEINAL ARQSLISADG VIEGGFTAGA YGMEMSAAAY KSSWRFDMEG LPADLIRRGM AIPDATQPHG LKLLIEDYPY ANDGLLLWSA
701: IQTWVRTYVE RYYPNPNLIK TDSELQSWYS ESINVGHADL RDADWWPELS TVDDLVSILT TLIWLASAQH AALNFGQYPY GGYVPNRPPL MRRLIPDESD
801: PEYASFISHP EKYYFSSMPS LAQTSKFMAV VDTLSTHSPD EEYIGERQQP SIWTGDAEIV EAFYGFAAEI GRIEKEIEKR NADPDRRNRC GAGVLPYELL
901: VPSSEPGVTC RGVPNSVSI

Arabidopsis Description

LOX3Lipoxygenase 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LNR3]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.