Factsheet for TraesCS5A01G032800.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 3
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, plastid
MultiLoc:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G149200.1
TraesCS1B01G167100.1
TraesCS1D01G146500.1
TraesCS4A01G087900.1
TraesCS4B01G216300.1
TraesCS4D01G216800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G45140.1	TraesCS4A01G087900.1	AT5G18110.1	11117257
AT3G45140.1	TraesCS4B01G216300.1	AT5G18110.1	11117257
AT3G45140.1	TraesCS4D01G216800.1	AT5G18110.1	11117257
AT3G45140.1	TraesCS1A01G149200.1	AT5G35620.1	11117257
AT3G45140.1	TraesCS1B01G167100.1	AT5G35620.1	11117257
AT3G45140.1	TraesCS1D01G146500.1	AT5G35620.1	11117257

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G033000.1	Wheat	plastid	76.95	69.58
TraesCS5D01G041100.1	Wheat	plastid	75.32	68.47
TraesCS7A01G034900.1	Wheat	mitochondrion	19.67	57.68
Os12t0559934-00	Rice	cytosol	13.04	57.44
CDY72550	Canola	cytosol	19.09	51.09
CDY07409	Canola	cytosol	22.82	50.65
TraesCS5A01G007900.1	Wheat	plastid	54.37	50.32
VIT_13s0064g01500.t01	Wine grape	cytosol	13.97	48.0
Os12t0559200-01	Rice	plastid	51.11	47.61
CDY61034	Canola	cytosol	24.68	47.43
CDY61881	Canola	cytosol	19.32	46.76
Solyc01g009680.2.1	Tomato	plastid	23.98	46.5
VIT_13s0064g01490.t01	Wine grape	cytosol	20.37	43.86
VIT_06s0004g01480.t01	Wine grape	cytosol	40.4	43.76
VIT_06s0004g01500.t01	Wine grape	cytosol	39.93	43.36
PGSC0003DMT400020118	Potato	cytosol	34.81	43.15
VIT_06s0004g01460.t01	Wine grape	plastid	29.92	42.98
TraesCS6A01G166000.1	Wheat	golgi	43.77	41.73
VIT_13s0064g01480.t01	Wine grape	plastid	42.61	40.53
Solyc01g006560.2.1	Tomato	plastid	42.14	40.13
Os12t0560200-00	Rice	cytosol	4.54	39.39
KRG89883	Soybean	cytosol, plastid	39.35	39.35
Solyc01g006540.2.1	Tomato	plastid	40.98	39.29
PGSC0003DMT400081909	Potato	plastid	40.98	39.15
VIT_06s0004g01450.t01	Wine grape	cytosol, extracellular	39.0	39.0
VIT_06s0004g01470.t01	Wine grape	cytosol	40.86	38.87
CDY04196	Canola	plastid	39.81	38.47
KRH17965	Soybean	plastid	40.98	38.34
VIT_06s0004g01510.t01	Wine grape	plastid	40.16	38.29
KRH29669	Soybean	plastid	40.16	38.29
KRH29668	Soybean	nucleus	40.28	38.19
KRH24671	Soybean	cytosol, plastid	40.4	37.97
AT3G45140.1	Thale cress	plastid	39.58	37.95
TraesCS7A01G246200.1	Wheat	plastid	41.09	37.92
CDX91565	Canola	plastid	39.7	37.89
Bra004060.1-P	Field mustard	plastid	39.58	37.82
KRG89889	Soybean	cytosol, plastid	37.83	37.79
CDY16339	Canola	plastid	33.41	37.71
CDY61036	Canola	plastid	38.88	37.57
CDX67920	Canola	plastid	39.46	37.5
CDX79416	Canola	plastid	39.46	37.5
Bra003526.1-P	Field mustard	plastid	39.46	37.5
Bra004057.1-P	Field mustard	cytosol	38.88	37.49
KRH18682	Soybean	cytosol, mitochondrion	39.46	37.21
Bra004059.1-P	Field mustard	plastid	37.49	37.18
KRG89888	Soybean	nucleus	39.0	37.1
Solyc12g011040.1.1	Tomato	nucleus, plastid	38.07	36.66
TraesCS4A01G359800.1	Wheat	cytosol	22.24	35.97
TraesCS4A01G275800.1	Wheat	cytosol	9.66	34.73
Bra022535.1-P	Field mustard	plastid	32.01	33.91
TraesCS5A01G378800.2	Wheat	cytosol	29.92	33.03
CDY70843	Canola	cytosol	4.77	32.54
TraesCS4A01G009400.1	Wheat	plastid	34.58	32.18
TraesCS2A01G315100.2	Wheat	plastid	34.46	31.49
Bra004058.1-P	Field mustard	plastid	38.53	31.29
TraesCS5A01G378900.1	Wheat	cytosol	31.32	31.13
CDY07407	Canola	cytosol, plastid	39.58	30.99
TraesCS1A01G212900.1	Wheat	cytosol	30.03	30.57
TraesCS6A01G132500.1	Wheat	mitochondrion	30.85	30.36
TraesCS6A01G132200.1	Wheat	mitochondrion	30.85	30.36
TraesCS5A01G378700.1	Wheat	cytosol	30.5	30.32
TraesCS4A01G275900.1	Wheat	cytosol, unclear	30.73	30.07
CDY70245	Canola	plastid	15.72	29.48
TraesCS5A01G379000.1	Wheat	nucleus, unclear	26.19	29.22
CDY61880	Canola	plastid	18.04	28.13
CDY70606	Canola	plastid	12.69	27.59
CDY07408	Canola	plastid	14.67	27.51
TraesCS2A01G525500.1	Wheat	plastid	28.41	26.32
CDY61882	Canola	plastid	11.41	25.32

Protein Annotations

Gene3D:1.20.245.10	Gene3D:2.60.60.20	Gene3D:4.10.372.10	Gene3D:4.10.375.10	MapMan:50.1.12	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491
GO:GO:0016702	GO:GO:0046872	GO:GO:0055114	InterPro:IPR013819	InterPro:IPR027433	InterPro:LipOase
InterPro:LipOase_C	InterPro:LipOase_CS	InterPro:LipOase_C_sf	InterPro:LipOase_plant	InterPro:Lipoxygenase_dom_3	PFAM:PF00305
InterPro:PLAT/LH2_dom_sf	PRINTS:PR00087	PRINTS:PR00468	ScanProsite:PS00081	PFscan:PS51393	PANTHER:PTHR11771
PANTHER:PTHR11771:SF89	SUPFAM:SSF48484	SUPFAM:SSF49723	EnsemblPlantsGene:TraesCS5A01G032800	EnsemblPlants:TraesCS5A01G032800.1	SEG:seg

Description

No Description!

Coordinates

chr5A:-:29905295..29910322

Molecular Weight (calculated)

97197.9 Da

IEP (calculated)

7.042

GRAVY (calculated)

-0.452

Length

859 amino acids

Sequence
(BLAST)

001: MVRGGAATRA RAPCLPVLQA DPYGAQRRED LSRSPTAARP ATTPTTQAAG AATTGEAPWC NGDHGQSPLE APHKSVNGQP NVSSARRAVP VPEACRTLSN
101: ARHTVSTVGC TVTVTATTIT TTTLAEVDTV AHRAAPRGFN LTLSNIKMKA TVTVHMKKER EDPVSSYCKY SGTGADEEFY TYEATFTVPA SFAPIGAVRV
201: VNDQNTEMLL ARRGKHLPRR PGPGVVQRYV IPLQLVSWIH PSHSSHDKRT FFPVTQLPSC LRVVHYSYLP SQTPEGMKRL RSSELLAIRG DGTGERKPHQ
301: RIYDYDVYND LGNKRPVLGG EKRPYPRRCR TGRRHYKQDA ASDAPSEMRA TDKIYVPRDE AFTEIKDAAF IRELVYFVRG TRGLHAQVQG YERPQEPQEP
401: SQSQPHTQAE IVGVMIGFVV DELEHLLHGA HLCEEIRRFL KFETPEIHDK DKFAWFRDEE FARQTLAGMN PLSIQLVTEL RIVSKLDGPS LITKELIEEQ
501: INGVMTAEEA MSKKKLFMLD YHDMFLPFVH KLAKSHVLAH DTGYHQLVSH WLRTHGCVEP YIIAANRQLS RMHPVYQLLH PHFRYTMEIN AQARQMLIDA
601: GGIIESTFST GRYCMELSSV VYDKFWRFVM EALPEDLIRR GMAIRREDGK LGLAIEDYPY ANDGLMVWDA IKQWASDYVK CYYSCAEDII DDQELQGWWT
701: EVRTKGHEDK KDEPWWPVLD SHESLVQVLA AIMWVTSAHH AAVNFGQYPM AGYIPNRPTT TRKNMPPEMG GPDSKEMRAF LEEPERVLLD TFPSQYQSVV
801: VMLVLNLLSS HSPDEEYMGT YQELVWSKEE KIKEAFDRLK SKMIDIAAQI DTGIEGFPV

Best Arabidopsis Sequence Match ( AT1G17420.1 )
(BLAST)

001: MALAKELMGY PLITERSSLV SSASHFKKRT QSTQFSINPF DRRPRKTKSG VVAAISEDLV KTLRFSTTTG DRKSEEEEKA AVKFKVRAVV TVRNKNKEDL
101: KETLVKHLDA FADKIGRNIV LELISTQLDP KTKLPKKSNA AVLKDWSKKS KTKAERVHYT AEFTVDAAFG SPGAITVMNK HQKEFFLESI TIEGFALGPV
201: HFPCNSWVQS QKDHPDKRIF FTNQPYLPNE TPSGLRVLRE KELKNLRGDG SGVRKLSDRI YDFDVYNDLG NPDKSSELSR PKLGGKEVPY PRRCRTGRQS
301: TVSDKDAESR VEKPLPMYVP RDEQFEESKQ DTFAAGRLKA VLHHLIPSLK ASIVAEDFAD FGEIDRLYKE GLLLKLGFQD DIFKKFPLPK VVVDTLQEST
401: KGLLKYDTPK ILSKDKNAWL RDDEFARQAI AGINPVNIER VKTFPPVSNL DPKIYGPQHS ALTDDHIIGH LDGFSVQQAL EENRLYMLDY HDIFLPFLDR
501: INALDGRKAY ATRTIFFLTR LGTLKPVAIE LSLPPHGPKH RSKRVLTPPV DATSNWMWQL AKAHVSSNDA GVHQLVNHWL RTHACLEPFI LAAHRQLSAM
601: HPIFKLLDPH MRYTLEINAL ARQSLISADG VIEGGFTAGA YGMEMSAAAY KSSWRFDMEG LPADLIRRGM AIPDATQPHG LKLLIEDYPY ANDGLLLWSA
701: IQTWVRTYVE RYYPNPNLIK TDSELQSWYS ESINVGHADL RDADWWPELS TVDDLVSILT TLIWLASAQH AALNFGQYPY GGYVPNRPPL MRRLIPDESD
801: PEYASFISHP EKYYFSSMPS LAQTSKFMAV VDTLSTHSPD EEYIGERQQP SIWTGDAEIV EAFYGFAAEI GRIEKEIEKR NADPDRRNRC GAGVLPYELL
901: VPSSEPGVTC RGVPNSVSI

Arabidopsis Description

LOX3Lipoxygenase 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LNR3]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.