Factsheet for Solyc01g006560.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 2
cytosol 3

Predictors

GFP

MS/MS

Papers

plastid: 22908117
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc09g090580.2.1
Solyc10g080660.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G45140.1	Solyc10g080660.1.1	AT5G18110.1	11117257
AT3G45140.1	Solyc09g090580.2.1	AT5G35620.1	11117257

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g009680.2.1	Tomato	plastid	47.78	97.29
Solyc01g006540.2.1	Tomato	plastid	78.38	78.91
Solyc12g011040.1.1	Tomato	nucleus, plastid	74.61	75.45
Os12t0559934-00	Rice	cytosol	15.19	70.26
CDY72550	Canola	cytosol	24.28	68.22
CDY07409	Canola	cytosol	28.94	67.44
CDY61034	Canola	cytosol	32.93	66.44
VIT_06s0004g01500.t01	Wine grape	cytosol	57.87	65.99
HORVU3Hr1G047210.1	Barley	cytosol	15.85	65.9
VIT_06s0004g01480.t01	Wine grape	cytosol	56.98	64.82
KRH29669	Soybean	plastid	63.08	63.15
VIT_06s0004g01510.t01	Wine grape	plastid	62.97	63.04
VIT_06s0004g01460.t01	Wine grape	plastid	41.69	62.88
CDY70843	Canola	cytosol	8.76	62.7
VIT_06s0004g01470.t01	Wine grape	cytosol	62.08	62.02
CDY61881	Canola	cytosol	24.39	61.97
KRH29668	Soybean	nucleus	61.64	61.37
KRH24671	Soybean	cytosol, plastid	61.97	61.16
KRG89883	Soybean	cytosol, plastid	57.65	60.54
KRG89889	Soybean	cytosol, plastid	56.21	58.95
GSMUA_Achr3P11780_001	Banana	plastid	54.66	58.27
GSMUA_Achr9P12470_001	Banana	plastid	54.32	58.13
KRG89888	Soybean	nucleus	57.76	57.7
KRH18682	Soybean	cytosol, mitochondrion	57.98	57.41
KRH17965	Soybean	plastid	58.31	57.3
VIT_06s0004g01450.t01	Wine grape	cytosol, extracellular	53.99	56.69
CDX79416	Canola	plastid	56.32	56.19
AT3G45140.1	Thale cress	plastid	55.43	55.8
CDX91565	Canola	plastid	55.54	55.67
CDX67920	Canola	plastid	55.77	55.64
Bra003526.1-P	Field mustard	plastid	55.65	55.53
OQU80925	Sorghum	cytosol	52.55	54.8
CDY16339	Canola	plastid	45.9	54.4
Bra004057.1-P	Field mustard	cytosol	53.55	54.21
CDY04196	Canola	plastid	53.33	54.11
Bra022535.1-P	Field mustard	plastid	48.45	53.88
Bra004059.1-P	Field mustard	plastid	51.66	53.81
HORVU7Hr1G050680.1	Barley	peroxisome	40.58	53.51
HORVU6Hr1G033600.1	Barley	plastid	53.1	53.46
Zm00001d053675_P001	Maize	plastid	53.55	53.37
Bra004060.1-P	Field mustard	plastid	52.88	53.06
TraesCS6B01G193400.1	Wheat	plastid	52.99	53.05
KXG29701	Sorghum	plastid	53.88	53.0
CDY61036	Canola	plastid	52.22	52.98
TraesCS6A01G166000.1	Wheat	golgi	52.77	52.83
TraesCS7D01G029400.1	Wheat	cytosol	15.52	52.83
TraesCS6D01G154600.1	Wheat	plastid	52.66	52.72
Os02t0194700-01	Rice	plasma membrane	54.1	52.7
TraesCS4D01G347300.1	Wheat	cytosol	51.66	52.66
Zm00001d015852_P004	Maize	plastid	52.55	52.03
TraesCS6B01G014400.1	Wheat	cytosol	34.59	51.91
Os08t0508800-01	Rice	nucleus, plasma membrane	53.1	51.84
TraesCS7B01G145200.1	Wheat	plastid	53.1	51.62
TraesCS7D01G244800.1	Wheat	plastid	52.99	51.29
TraesCS7A01G246200.1	Wheat	plastid	52.77	51.13
Os08t0509100-01	Rice	nucleus	52.99	50.8
Zm00001d031449_P001	Maize	mitochondrion	52.66	49.69
HORVU5Hr1G001180.1	Barley	plastid	51.22	49.62
TraesCS5D01G013400.1	Wheat	plastid	51.0	49.57
TraesCS5B01G006500.1	Wheat	plastid	51.0	49.57
TraesCS5A01G007900.1	Wheat	plastid	50.89	49.46
TraesCS7A01G034900.1	Wheat	mitochondrion	15.63	48.12
Os12t0559200-01	Rice	plastid	48.89	47.83
HORVU7Hr1G006320.4	Barley	plastid	49.0	47.68
HORVU6Hr1G000510.1	Barley	plastid	48.45	46.89
TraesCS6D01G010100.1	Wheat	plastid	48.78	46.86
Solyc05g014790.2.1	Tomato	plastid	46.78	46.32
CDY61880	Canola	plastid	28.27	46.28
Bra004058.1-P	Field mustard	plastid	53.99	46.03
Solyc03g122340.2.1	Tomato	cytosol	46.12	45.81
TraesCS5B01G033000.1	Wheat	plastid	48.0	45.58
TraesCS5D01G041100.1	Wheat	plastid	47.67	45.5
CDY07407	Canola	cytosol, plastid	54.1	44.48
Solyc09g055900.2.1	Tomato	cytosol	22.62	44.16
Solyc08g014000.2.1	Tomato	cytosol, nucleus, plastid	41.46	43.49
CDY70245	Canola	plastid	21.62	42.58
Os12t0560200-00	Rice	cytosol	4.66	42.42
Solyc08g029000.2.1	Tomato	cytosol, extracellular, nucleus	40.24	42.16
TraesCS5A01G032800.1	Wheat	mitochondrion	40.13	42.14
Solyc09g075870.1.1	Tomato	cytosol	39.8	42.04
CDY07408	Canola	plastid	21.29	41.92
Solyc01g099160.2.1	Tomato	cytosol, extracellular, nucleus	39.8	41.65
Solyc01g099210.2.1	Tomato	cytosol	39.8	41.6
Solyc01g099180.2.1	Tomato	cytosol	38.8	40.98
Solyc09g075860.2.1	Tomato	cytosol, nucleus	39.69	40.82
Solyc01g099200.2.1	Tomato	cytosol, plastid	38.03	40.78
Solyc01g099190.2.1	Tomato	cytosol, extracellular, nucleus, plastid	38.58	40.56
CDY70606	Canola	plastid	16.74	38.23
CDY61882	Canola	plastid	15.96	37.21
Solyc01g099170.2.1	Tomato	cytosol, mitochondrion	18.4	32.49
Solyc01g099150.2.1	Tomato	nucleus	29.71	31.09
Solyc09g055890.2.1	Tomato	cytosol	11.64	28.3

Protein Annotations

Gene3D:1.20.245.10	MapMan:11.7.1.2	Gene3D:2.60.60.20	Gene3D:3.10.450.60	Gene3D:4.10.372.10	Gene3D:4.10.375.10
UniProt:C0KKU8	EMBL:FJ617476	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515
GO:GO:0006629	GO:GO:0006633	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016491	GO:GO:0016702	GO:GO:0031408	GO:GO:0046872	GO:GO:0051213	GO:GO:0055114
InterPro:IPR001024	InterPro:IPR013819	InterPro:IPR027433	InterPro:LipOase	InterPro:LipOase_C	InterPro:LipOase_CS
InterPro:LipOase_C_sf	InterPro:LipOase_Fe_BS	InterPro:LipOase_plant	InterPro:Lipoxygenase_dom_3	PFAM:PF00305	PFAM:PF01477
InterPro:PLAT/LH2_dom	InterPro:PLAT/LH2_dom_sf	PRINTS:PR00087	PRINTS:PR00468	ScanProsite:PS00081	ScanProsite:PS00711
PFscan:PS50095	PFscan:PS51393	PANTHER:PTHR11771	PANTHER:PTHR11771:SF89	SMART:SM00308	SUPFAM:SSF48484
SUPFAM:SSF49723	EnsemblPlantsGene:Solyc01g006560.2	EnsemblPlants:Solyc01g006560.2.1	UniParc:UPI0001930BDC	SEG:seg	:

Description

Lipoxygenase [Source:UniProtKB/TrEMBL;Acc:C0KKU8]

Coordinates

chr1:-:1128815..1139705

Molecular Weight (calculated)

102476.0 Da

IEP (calculated)

5.203

GRAVY (calculated)

-0.397

Length

902 amino acids

Sequence
(BLAST)

001: MLKPQLQQSS QSTKTLIPYW KTKPLCLASI PINTLNNKNL RVKKKKNFIT KAVVSSTENS SYVQSSNIEN STSGKAIVIV QRTVGGTNLS LTRGLDDIGD
101: LFGRSLFLSI VAAELDPKTG VEKPTIEGFA RRGRDVDGNR EYEVEFEIPE DFGDVGAILI ENQQRKQMYV KNIVIDGFVH GKVEITCNSW VHSKYDNPDK
201: RIFFTNKSYL PSQTPSGVKK LRETELVTLR GDGFGERKIY ERIYDYDVYN DIGDPDGDGD GDGKRPVLGG KELPYPRRCR TGRARSEKDP LSESKGDFTY
301: VPRDEAFSEV KDLSFSGNTI YAVLHAVVPG LQSIITDRDL GFPHFPAIDS LYNVEVELPA LQTNSLFSII RRLIRAISET RKDVLLFETP EFLERDKFAW
401: FRDVEFARQT LAGLNPYSIR LVREWPLKSK LDPEVYGPPE SAITKELIEE EIGGFMTVEE AVQQKKLFIL DYHDLLLPFV NKVNELKGTV LYGSRTLFYL
501: TPNGTLRPLA IELTRPPVDD KPQWKQVYCP TWYATGAWLW RIAKAHVLAH DSGYHQLVSH WLRTHCCTEP YIIASNRQLS AMHPIYRLLF PHFRYTMEIN
601: GTAREALINA NGVIESSFSP GKYSMELSSV AYDLEWRFDR EALPEDLISR GLAEEDPNAP YGLRLTIEDY PFASDGLVLW DILKQWVTNY VNHYYPQANL
701: IECDEELQAW WLEIKNVGHG DKKDEPWWPE LNTPNDLIGI VTTIIWVTSG HHAAVNFGQY SYAGYFPNRP TIARSKMPTE DPTDEEWEDF LNKPEEALLK
801: CFPSQLQATK VIAVLDVLSN HSPDEEYIGT NIEPFWKDEP VINAAFEVFS GKLKELEGII DARNADCNLK NRNGAGVMPY ELLKPFSEPG ITGKGVPYSI
901: SI

Best Arabidopsis Sequence Match ( AT3G45140.1 )
(BLAST)

001: MYCRESLSSL QTLNVAKSLS SLFPKQSALI NPISAGRRNN LPRPNLRRRC KVTASRANIE QEGNTVKEPI QNIKVKGYIT AQEEFLEGIT WSRGLDDIAD
101: IRGRSLLVEL ISAKTDQRIT VEDYAQRVWA EAPDEKYECE FEMPEDFGPV GAIKIQNQYH RQLFLKGVEL KLPGGSITFT CESWVAPKSV DPTKRIFFSD
201: KSYLPSQTPE PLKKYRKEEL ETLQGKNREE VGEFTKFERI YDYDVYNDVG DPDNDPELAR PVIGGLTHPY PRRCKTGRKP CETDPSSEQR YGGEFYVPRD
301: EEFSTAKGTS FTGKAVLAAL PSIFPQIESV LLSPQEPFPH FKAIQNLFEE GIQLPKDAGL LPLLPRIIKA LGEAQDDILQ FDAPVLINRD RFSWLRDDEF
401: ARQTLAGLNP YSIQLVEEWP LISKLDPAVY GDPTSLITWE IVEREVKGNM TVDEALKNKR LFVLDYHDLL LPYVNKVREL NNTTLYASRT LFFLSDDSTL
501: RPVAIELTCP PNINKPQWKQ VFTPGYDATS CWLWNLAKTH AISHDAGYHQ LISHWLRTHA CTEPYIIAAN RQLSAMHPIY RLLHPHFRYT MEINARARQS
601: LVNGGGIIET CFWPGKYALE LSSAVYGKLW RFDQEGLPAD LIKRGLAEED KTAEHGVRLT IPDYPFANDG LILWDAIKEW VTDYVKHYYP DEELITSDEE
701: LQGWWSEVRN IGHGDKKDEP WWPVLKTQDD LIGVVTTIAW VTSGHHAAVN FGQYGYGGYF PNRPTTTRIR MPTEDPTDEA LKEFYESPEK VLLKTYPSQK
801: QATLVMVTLD LLSTHSPDEE YIGEQQEASW ANEPVINAAF ERFKGKLQYL EGVIDERNVN ITLKNRAGAG VVKYELLKPT SEHGVTGMGV PYSISI

Arabidopsis Description

LOX2Lipoxygenase 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P38418]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.