Factsheet for HORVU7Hr1G006320.4

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 2
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
Predotar:	mitochondrion
TargetP:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU1Hr1G039260.2
HORVU2Hr1G094490.1
HORVU4Hr1G061500.4

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G45140.1	HORVU2Hr1G094490.1	AT5G18110.1	11117257
AT3G45140.1	HORVU4Hr1G061500.4	AT5G18110.1	11117257
AT3G45140.1	HORVU1Hr1G039260.2	AT5G35620.1	11117257

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os12t0559934-00	Rice	cytosol	17.26	82.05
HORVU3Hr1G047210.1	Barley	cytosol	16.61	70.97
HORVU5Hr1G001180.1	Barley	plastid	67.1	66.81
HORVU6Hr1G000510.1	Barley	plastid	65.59	65.24
Solyc01g009680.2.1	Tomato	plastid	28.91	60.5
VIT_13s0064g01490.t01	Wine grape	cytosol	25.89	60.15
CDY61034	Canola	cytosol	28.59	59.28
VIT_13s0064g01500.t01	Wine grape	cytosol	15.86	58.8
CDY07409	Canola	cytosol	24.27	58.14
Os12t0559200-01	Rice	plastid	57.82	58.13
CDY72550	Canola	cytosol	19.31	55.76
PGSC0003DMT400020118	Potato	cytosol	40.67	54.4
VIT_06s0004g01500.t01	Wine grape	cytosol	45.85	53.73
Os12t0560200-00	Rice	cytosol	5.72	53.54
VIT_06s0004g01480.t01	Wine grape	cytosol	45.63	53.34
VIT_06s0004g01460.t01	Wine grape	plastid	33.98	52.68
HORVU6Hr1G033600.1	Barley	plastid	50.81	52.57
VIT_13s0064g01480.t01	Wine grape	plastid	50.92	52.27
HORVU7Hr1G050680.1	Barley	peroxisome	38.3	51.9
CDY61881	Canola	cytosol	19.74	51.55
VIT_06s0004g01510.t01	Wine grape	plastid	47.79	49.17
KRH29669	Soybean	plastid	47.68	49.06
KRG89883	Soybean	cytosol, plastid	45.42	49.01
Solyc01g006560.2.1	Tomato	plastid	47.68	49.0
VIT_06s0004g01470.t01	Wine grape	cytosol	47.57	48.84
PGSC0003DMT400081909	Potato	plastid	47.36	48.83
Solyc01g006540.2.1	Tomato	plastid	46.6	48.21
KRG89889	Soybean	cytosol, plastid	44.55	48.02
KRH29668	Soybean	nucleus	46.93	48.01
KRH17965	Soybean	plastid	47.25	47.71
KRH24671	Soybean	cytosol, plastid	46.93	47.59
VIT_06s0004g01450.t01	Wine grape	cytosol, extracellular	43.8	47.26
KRG89888	Soybean	nucleus	45.95	47.18
CDX91565	Canola	plastid	45.52	46.89
KRH18682	Soybean	cytosol, mitochondrion	46.06	46.87
Solyc12g011040.1.1	Tomato	nucleus, plastid	44.98	46.75
AT3G45140.1	Thale cress	plastid	44.98	46.54
CDX79416	Canola	plastid	45.2	46.35
CDY04196	Canola	plastid	44.34	46.23
CDX67920	Canola	plastid	44.98	46.13
Bra003526.1-P	Field mustard	plastid	44.88	46.02
CDY16339	Canola	plastid	37.43	45.6
Bra004057.1-P	Field mustard	cytosol	43.69	45.45
HORVU5Hr1G055110.2	Barley	mitochondrion	17.26	45.33
CDY70843	Canola	cytosol	6.15	45.24
Bra004059.1-P	Field mustard	plastid	41.96	44.92
Bra004060.1-P	Field mustard	plastid	43.26	44.61
CDY61036	Canola	plastid	42.72	44.54
Bra022535.1-P	Field mustard	plastid	38.51	44.02
CDY61880	Canola	plastid	23.52	39.56
HORVU4Hr1G076570.6	Barley	cytosol, plastid	38.51	38.97
Bra004058.1-P	Field mustard	plastid	44.01	38.56
HORVU5Hr1G093770.1	Barley	cytosol	34.84	37.43
CDY07407	Canola	cytosol, plastid	44.23	37.37
HORVU1Hr1G054390.4	Barley	cytosol	33.87	37.2
HORVU5Hr1G093700.3	Barley	cytosol, plasma membrane	34.52	37.04
HORVU4Hr1G005920.1	Barley	cytosol, plasma membrane	35.06	37.02
HORVU5Hr1G054200.1	Barley	cytosol, mitochondrion	19.42	36.89
HORVU5Hr1G117110.1	Barley	cytosol	33.87	35.4
CDY70245	Canola	plastid	16.61	33.62
HORVU2Hr1G115980.2	Barley	plastid	31.82	33.45
HORVU2Hr1G115960.1	Barley	plastid	32.15	32.22
CDY07408	Canola	plastid	15.86	32.1
CDY70606	Canola	plastid	13.59	31.9
CDY61882	Canola	plastid	12.19	29.2

Protein Annotations

Gene3D:1.20.245.10	MapMan:11.7.1.2	Gene3D:2.60.60.20	Gene3D:3.10.450.60	Gene3D:4.10.372.10	Gene3D:4.10.375.10
UniProt:A0A287VF42	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0006629
GO:GO:0006633	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016491
GO:GO:0016702	GO:GO:0031408	GO:GO:0046872	GO:GO:0051213	GO:GO:0055114	EnsemblPlantsGene:HORVU7Hr1G006320
EnsemblPlants:HORVU7Hr1G006320.4	InterPro:IPR001024	InterPro:IPR013819	InterPro:IPR027433	InterPro:LipOase	InterPro:LipOase_C
InterPro:LipOase_CS	InterPro:LipOase_C_sf	InterPro:LipOase_Fe_BS	InterPro:LipOase_plant	InterPro:Lipoxygenase_dom_3	PFAM:PF00305
InterPro:PLAT/LH2_dom	InterPro:PLAT/LH2_dom_sf	PRINTS:PR00087	PRINTS:PR00468	ScanProsite:PS00081	ScanProsite:PS00711
PFscan:PS51257	PFscan:PS51393	PANTHER:PTHR11771	PANTHER:PTHR11771:SF89	SMART:SM00308	SUPFAM:SSF48484
SUPFAM:SSF49723	UniParc:UPI000B485B18	SEG:seg	:	:	:

Description

Lipoxygenase [Source:UniProtKB/TrEMBL;Acc:A0A287VF42]

Coordinates

chrchr7H:-:8220885..8226058

Molecular Weight (calculated)

105491.0 Da

IEP (calculated)

6.398

GRAVY (calculated)

-0.444

Length

927 amino acids

Sequence
(BLAST)

001: MLRGALATPT HGTFTFFSCA APLARPAVLA PGARQRSSSP RRRSITKVGS TTTTTLYESN GAALQTTVRP SFYDLDQKTV EMEATVTVHM KSFFSDMLDR
101: SLDEFFDIFG KSWLHLELIS SELDQDGREH KPIPVGFKNP KKHDAEFGIY EATFDVPASF GPIGAVHVTN SHHSEMLLGD IKVFPAGQES SATFKRMYLV
201: VLARKYLQAC IFVATQYSCL PSQTPKGVEK LRXSELEAIR GSGHGERTAH ERIYDYDVYN DLGDPDHDID TKRPVLGGKD HPYPRRGRTG RPRSKADPLS
301: ETRTDKDHIY VPRDEAFSER KQAAFNTKLN FSKLHAVYTY MKTSKHKGQS FPSLAAIDAM YEDGSKNQPQ QKLDGWCATL DLLEKELSHL VHLEGAMFLE
401: EIRKVIKFET PEIHDRDKFA WFRDEEFARE TLAGINPLSI QLVTELPIVS KLDEVIYGPA DSLITKELID EQIDRGMTAD EAVKKKKLFM LDYHDMFLPY
501: VHKVREIDDT TLYGSRTLFF LTEDGTLRPI AIELTRPMSP SKPQWREVYT PGCDGSVTGS WLWQLAKTHV LAHDSGYHQL VSHWLRTHCC VEPYIIAANR
601: QLSQMHPIYR LLHPHFRYTM ELNAIGRVML ISGDGAIESV FSPRKYCMEL SSLVYDKFWR FDMEGLPEDL IRRGMAVKGG DGKLELVIED YPYANDGLLI
701: WDAIKQWASE YVEHYYPCTA DIIGDEELQG WWTEVRTKGH EDKKDEPWWP KIDNHESLVQ VLATIMWVTS AHHAAVNFGQ YPYAGYFPNR PTIARRNMPS
801: EMGVEGMNTF EEAPEKVLLD TFPSIYQSYS ALAIMDLLSS HSPDEEYMGT YQDPAWKDNV KISKAFAKFK GRLIEIVAQI NEWNTDRKRK NRHGAGVVPY
901: VLLKPSDGNP MDEKMVMEMG IPNSISI

Best Arabidopsis Sequence Match ( AT1G17420.1 )
(BLAST)

001: MALAKELMGY PLITERSSLV SSASHFKKRT QSTQFSINPF DRRPRKTKSG VVAAISEDLV KTLRFSTTTG DRKSEEEEKA AVKFKVRAVV TVRNKNKEDL
101: KETLVKHLDA FADKIGRNIV LELISTQLDP KTKLPKKSNA AVLKDWSKKS KTKAERVHYT AEFTVDAAFG SPGAITVMNK HQKEFFLESI TIEGFALGPV
201: HFPCNSWVQS QKDHPDKRIF FTNQPYLPNE TPSGLRVLRE KELKNLRGDG SGVRKLSDRI YDFDVYNDLG NPDKSSELSR PKLGGKEVPY PRRCRTGRQS
301: TVSDKDAESR VEKPLPMYVP RDEQFEESKQ DTFAAGRLKA VLHHLIPSLK ASIVAEDFAD FGEIDRLYKE GLLLKLGFQD DIFKKFPLPK VVVDTLQEST
401: KGLLKYDTPK ILSKDKNAWL RDDEFARQAI AGINPVNIER VKTFPPVSNL DPKIYGPQHS ALTDDHIIGH LDGFSVQQAL EENRLYMLDY HDIFLPFLDR
501: INALDGRKAY ATRTIFFLTR LGTLKPVAIE LSLPPHGPKH RSKRVLTPPV DATSNWMWQL AKAHVSSNDA GVHQLVNHWL RTHACLEPFI LAAHRQLSAM
601: HPIFKLLDPH MRYTLEINAL ARQSLISADG VIEGGFTAGA YGMEMSAAAY KSSWRFDMEG LPADLIRRGM AIPDATQPHG LKLLIEDYPY ANDGLLLWSA
701: IQTWVRTYVE RYYPNPNLIK TDSELQSWYS ESINVGHADL RDADWWPELS TVDDLVSILT TLIWLASAQH AALNFGQYPY GGYVPNRPPL MRRLIPDESD
801: PEYASFISHP EKYYFSSMPS LAQTSKFMAV VDTLSTHSPD EEYIGERQQP SIWTGDAEIV EAFYGFAAEI GRIEKEIEKR NADPDRRNRC GAGVLPYELL
901: VPSSEPGVTC RGVPNSVSI

Arabidopsis Description

LOX3Lipoxygenase 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LNR3]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.