Factsheet for HORVU4Hr1G061500.4

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU2Hr1G086240.1
HORVU3Hr1G047210.1
HORVU5Hr1G001180.1
HORVU6Hr1G000510.1
HORVU6Hr1G023180.1
HORVU6Hr1G033600.1
HORVU7Hr1G006320.4
HORVU7Hr1G050680.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G18110.1	HORVU3Hr1G047210.1	AT3G45140.1	11117257
AT5G18110.1	HORVU5Hr1G001180.1	AT3G45140.1	11117257
AT5G18110.1	HORVU6Hr1G000510.1	AT3G45140.1	11117257
AT5G18110.1	HORVU6Hr1G033600.1	AT3G45140.1	11117257
AT5G18110.1	HORVU7Hr1G006320.4	AT3G45140.1	11117257
AT5G18110.1	HORVU7Hr1G050680.1	AT3G45140.1	11117257
AT5G18110.1	HORVU2Hr1G086240.1	AT5G57870.1	21798944
AT5G18110.1	HORVU6Hr1G023180.1	AT5G57870.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G216800.1	Wheat	cytosol	99.14	99.14
TraesCS4B01G216300.1	Wheat	cytosol	98.71	98.71
TraesCS4A01G087900.1	Wheat	cytosol	98.28	98.28
Os03t0262400-01	Rice	cytosol	81.47	83.26
EER92511	Sorghum	cytosol	81.03	82.1
Zm00001d028515_P001	Maize	cytosol	80.17	81.22
GSMUA_Achr4P11110_001	Banana	cytosol	74.57	76.55
VIT_08s0007g07290.t01	Wine grape	cytosol	73.28	75.56
GSMUA_Achr3P29580_001	Banana	cytosol	72.41	74.34
KRH70165	Soybean	cytosol	73.71	73.71
PGSC0003DMT400060836	Potato	cytosol	70.26	73.09
KRH08499	Soybean	cytosol	73.71	72.77
Solyc10g080660.1.1	Tomato	cytosol, nucleus	69.83	72.65
Bra006439.1-P	Field mustard	cytosol	68.1	72.48
CDX70795	Canola	cytosol	67.67	72.02
CDX78777	Canola	cytosol	67.24	71.56
CDY38487	Canola	cytosol	65.52	71.03
AT5G18110.1	Thale cress	cytosol	66.81	70.14
CDY02645	Canola	cytosol	65.09	67.41
Bra023664.1-P	Field mustard	cytosol	65.09	67.41
CDY45630	Canola	cytosol	64.66	66.96
CDY53257	Canola	cytosol	64.66	66.96
CDY49143	Canola	cytosol	64.66	66.96
Bra002134.1-P	Field mustard	cytosol	50.0	61.38
HORVU2Hr1G094490.1	Barley	plastid	41.38	58.54
HORVU1Hr1G039260.2	Barley	cytosol	25.43	28.1
HORVU3Hr1G113940.2	Barley	cytosol	25.86	27.91

Protein Annotations

MapMan:17.4.2.6	Gene3D:3.30.760.10	EMBL:AK354731	EMBL:AK364447	ncoils:Coil	UniProt:F2CSX9
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003743	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006412	GO:GO:0006413	GO:GO:0008135
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:HORVU4Hr1G061500
EnsemblPlants:HORVU4Hr1G061500.4	InterPro:IPR023398	PFAM:PF01652	ScanProsite:PS00813	PANTHER:PTHR11960	PANTHER:PTHR11960:SF18
SUPFAM:SSF55418	InterPro:TIF_eIF4e-like	InterPro:TIF_eIF_4E	InterPro:TIF_eIF_4E_CS	UniParc:UPI0002004E75	SEG:seg

Description

Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2CSX9]

Coordinates

chrchr4H:-:516126727..516130946

Molecular Weight (calculated)

26957.7 Da

IEP (calculated)

6.516

GRAVY (calculated)

-0.719

Length

232 amino acids

Sequence
(BLAST)

001: MEAAVERKVP EQEEQLQPSH ARAEDAPPAA VEEEDEAEAE ESERRNRELK AGLHPLRRKL VLWYTRRTPG TRSQSYEDNI KKIVDFSTVE SFWVCYCHLA
101: RPSALPSPTD LHLFKEGVRP LWEDPANRNG GKWIIRFKKA VSGRFWEDLV LVLVGDQLDY SDDVCGIVLS CRFNEDILSV WNRNASDHQA VMTLRDSIKR
201: HLKLPHTYLM EYKPHDASLR DNSSYRNTWL RG

Best Arabidopsis Sequence Match ( AT5G18110.1 )
(BLAST)

001: MEVLDRRDDE IRDSGNMDSI KSHYVTDSVS EERRSRELKD GDHPLRYKFS IWYTRRTPGV RNQSYEDNIK KMVEFSTVEG FWACYCHLAR SSLLPSPTDL
101: HFFKDGIRPL WEDGANCNGG KWIIRFSKVV SARFWEDLLL ALVGDQLDDA DNICGAVLSV RFNEDIISVW NRNASDHQAV MGLRDSIKRH LKLPHAYVME
201: YKPHDASLRD NSSYRNTWLR G

Arabidopsis Description

NCBPEukaryotic translation initiation factor NCBP [Source:UniProtKB/Swiss-Prot;Acc:Q9FK59]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.