Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra023664.1-P | Field mustard | cytosol | 99.11 | 99.11 |
| CDY45630 | Canola | cytosol | 99.11 | 99.11 |
| CDY53257 | Canola | cytosol | 98.66 | 98.66 |
| CDY49143 | Canola | cytosol | 98.66 | 98.66 |
| AT5G18110.1 | Thale cress | cytosol | 85.71 | 86.88 |
| CDX70795 | Canola | cytosol | 79.46 | 81.65 |
| CDY38487 | Canola | cytosol | 77.68 | 81.31 |
| CDX78777 | Canola | cytosol | 78.57 | 80.73 |
| GSMUA_Achr4P11110_001 | Banana | cytosol | 71.88 | 71.24 |
| VIT_08s0007g07290.t01 | Wine grape | cytosol | 70.54 | 70.22 |
| KRH70165 | Soybean | cytosol | 72.32 | 69.83 |
| PGSC0003DMT400060836 | Potato | cytosol | 69.2 | 69.51 |
| KRH08499 | Soybean | cytosol | 72.32 | 68.94 |
| Solyc10g080660.1.1 | Tomato | cytosol, nucleus | 68.3 | 68.61 |
| GSMUA_Achr3P29580_001 | Banana | cytosol | 68.75 | 68.14 |
| Os03t0262400-01 | Rice | cytosol | 66.96 | 66.08 |
| EER92511 | Sorghum | cytosol | 66.96 | 65.5 |
| Zm00001d028515_P001 | Maize | cytosol | 66.96 | 65.5 |
| TraesCS4D01G216800.1 | Wheat | cytosol | 67.41 | 65.09 |
| TraesCS4A01G087900.1 | Wheat | cytosol | 67.41 | 65.09 |
| HORVU4Hr1G061500.4 | Barley | cytosol | 67.41 | 65.09 |
| TraesCS4B01G216300.1 | Wheat | cytosol | 66.96 | 64.66 |
| HORVU2Hr1G094490.1 | Barley | plastid | 35.27 | 48.17 |
| CDX84118 | Canola | cytosol | 25.45 | 28.5 |
| CDY49364 | Canola | cytosol | 25.45 | 28.5 |
| CDY06456 | Canola | cytosol | 24.55 | 28.35 |
| CDY01513 | Canola | extracellular | 11.61 | 27.37 |
| CDY38545 | Canola | cytosol | 23.66 | 26.77 |
| CDY61674 | Canola | cytosol | 26.79 | 26.32 |
| CDX78824 | Canola | cytosol | 26.34 | 25.88 |
| CDY33686 | Canola | cytosol | 22.77 | 25.63 |
| CDX90426 | Canola | cytosol | 10.27 | 25.0 |
| CDY08883 | Canola | cytosol | 25.89 | 24.79 |
| CDX76547 | Canola | cytosol | 25.0 | 23.93 |
| CDX94676 | Canola | cytosol | 25.45 | 23.17 |
| CDY44305 | Canola | cytosol | 25.0 | 22.95 |
| CDX74645 | Canola | cytosol | 23.21 | 22.81 |
| CDX99836 | Canola | cytosol | 23.66 | 21.37 |
| CDY48345 | Canola | cytosol | 23.66 | 21.37 |
Protein Annotations
| MapMan:17.4.2.6 | Gene3D:3.30.760.10 | GO:A0A078EKV5 | EnsemblPlants:CDY02645 | ProteinID:CDY02645 | ProteinID:CDY02645.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003743 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006412 | GO:GO:0006413 | GO:GO:0008135 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | EnsemblPlantsGene:GSBRNA2T00114777001 |
| InterPro:IPR023398 | PFAM:PF01652 | ScanProsite:PS00813 | PANTHER:PTHR11960 | PANTHER:PTHR11960:SF18 | SUPFAM:SSF55418 |
| InterPro:TIF_eIF4e-like | InterPro:TIF_eIF_4E | InterPro:TIF_eIF_4E_CS | UniParc:UPI0004EED3BB | : | : |
Description
BnaC02g07900D
Coordinates
chrLK031936:+:609727..611657
Molecular Weight (calculated)
26048.6 Da
IEP (calculated)
6.882
GRAVY (calculated)
-0.623
Length
224 amino acids
Sequence
(BLAST)
(BLAST)
001: MEITERRDDE IRDAKESANI DTIKSQYVTD SFSDERYSRE LKDGLHPLRY KFAIWYTRRT PGVRSQTSYE DNIKKIVEFS TVEGFWASYC HLARSSLLPN
101: PTDLHFFKDG IRPLWEDGAN CNGGKWIIRF SKVVSARFWE DLLLALVGDQ LDDAENICGA VLSVRINEDI ISVWNRNASD HQAVMGLRDS IKRHLKLPHA
201: YVMEYKPHDA SLRDNSSYRN TWRG
101: PTDLHFFKDG IRPLWEDGAN CNGGKWIIRF SKVVSARFWE DLLLALVGDQ LDDAENICGA VLSVRINEDI ISVWNRNASD HQAVMGLRDS IKRHLKLPHA
201: YVMEYKPHDA SLRDNSSYRN TWRG
001: MEVLDRRDDE IRDSGNMDSI KSHYVTDSVS EERRSRELKD GDHPLRYKFS IWYTRRTPGV RNQSYEDNIK KMVEFSTVEG FWACYCHLAR SSLLPSPTDL
101: HFFKDGIRPL WEDGANCNGG KWIIRFSKVV SARFWEDLLL ALVGDQLDDA DNICGAVLSV RFNEDIISVW NRNASDHQAV MGLRDSIKRH LKLPHAYVME
201: YKPHDASLRD NSSYRNTWLR G
101: HFFKDGIRPL WEDGANCNGG KWIIRFSKVV SARFWEDLLL ALVGDQLDDA DNICGAVLSV RFNEDIISVW NRNASDHQAV MGLRDSIKRH LKLPHAYVME
201: YKPHDASLRD NSSYRNTWLR G
Arabidopsis Description
NCBPEukaryotic translation initiation factor NCBP [Source:UniProtKB/Swiss-Prot;Acc:Q9FK59]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.