Factsheet for Bra023664.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra003526.1-P
Bra004057.1-P
Bra004058.1-P
Bra004059.1-P
Bra004060.1-P
Bra020407.1-P
Bra022535.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G18110.1	Bra003526.1-P	AT3G45140.1	11117257
AT5G18110.1	Bra004057.1-P	AT3G45140.1	11117257
AT5G18110.1	Bra004058.1-P	AT3G45140.1	11117257
AT5G18110.1	Bra004059.1-P	AT3G45140.1	11117257
AT5G18110.1	Bra004060.1-P	AT3G45140.1	11117257
AT5G18110.1	Bra022535.1-P	AT3G45140.1	11117257
AT5G18110.1	Bra020407.1-P	AT5G57870.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY02645	Canola	cytosol	99.11	99.11
CDY45630	Canola	cytosol	99.11	99.11
CDY49143	Canola	cytosol	98.66	98.66
CDY53257	Canola	cytosol	98.66	98.66
AT5G18110.1	Thale cress	cytosol	85.27	86.43
Bra006439.1-P	Field mustard	cytosol	79.46	81.65
Bra002134.1-P	Field mustard	cytosol	65.62	77.78
GSMUA_Achr4P11110_001	Banana	cytosol	71.43	70.8
VIT_08s0007g07290.t01	Wine grape	cytosol	70.54	70.22
PGSC0003DMT400060836	Potato	cytosol	69.64	69.96
KRH70165	Soybean	cytosol	72.32	69.83
KRH08499	Soybean	cytosol	72.32	68.94
Solyc10g080660.1.1	Tomato	cytosol, nucleus	68.3	68.61
GSMUA_Achr3P29580_001	Banana	cytosol	68.75	68.14
Os03t0262400-01	Rice	cytosol	66.96	66.08
Zm00001d028515_P001	Maize	cytosol	67.41	65.94
EER92511	Sorghum	cytosol	66.96	65.5
HORVU4Hr1G061500.4	Barley	cytosol	67.41	65.09
TraesCS4A01G087900.1	Wheat	cytosol	67.41	65.09
TraesCS4D01G216800.1	Wheat	cytosol	67.41	65.09
TraesCS4B01G216300.1	Wheat	cytosol	66.96	64.66
HORVU2Hr1G094490.1	Barley	plastid	35.27	48.17
Bra012622.1-P	Field mustard	cytosol	17.86	30.53
Bra035531.1-P	Field mustard	cytosol	25.45	28.5
Bra039484.1-P	Field mustard	cytosol	23.66	26.77
Bra035393.1-P	Field mustard	cytosol	23.21	26.13
Bra013283.1-P	Field mustard	cytosol	26.34	25.88
Bra021026.1-P	Field mustard	cytosol	25.45	24.36
Bra030147.1-P	Field mustard	cytosol	23.66	21.72
Bra032325.1-P	Field mustard	cytosol	23.21	20.97

Protein Annotations

MapMan:17.4.2.6	Gene3D:3.30.760.10	EnsemblPlantsGene:Bra023664	EnsemblPlants:Bra023664.1	EnsemblPlants:Bra023664.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003743	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006412	GO:GO:0006413	GO:GO:0008135	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	InterPro:IPR023398	UniProt:M4E4G1
PFAM:PF01652	ScanProsite:PS00813	PANTHER:PTHR11960	PANTHER:PTHR11960:SF18	SUPFAM:SSF55418	InterPro:TIF_eIF4e-like
InterPro:TIF_eIF_4E	InterPro:TIF_eIF_4E_CS	UniParc:UPI00025431A1	:	:	:

Description

AT5G18110 (E=7e-116) NCBP | NCBP (NOVEL CAP-BINDING PROTEIN); RNA binding / translation initiation factor

Coordinates

chrA02:-:4409718..4411207

Molecular Weight (calculated)

26061.6 Da

IEP (calculated)

6.882

GRAVY (calculated)

-0.638

Length

224 amino acids

Sequence
(BLAST)

001: MEITERRDDE IRDAKESANI DNLKSQYVTD SFSDERYSRE LKDGLHPLRY KFAIWYTRRT PGVRSQTSYE DNIKKIVEFS TVEGFWASYC HLARSSLLPN
101: PTDLHFFKDG IRPLWEDGAN CNGGKWIIRF SKVVSARFWE DLLLALVGDQ LDDAENICGA VLSVRINEDI ISVWNRNASD HQAVMGLRDS IKRHLKLPHA
201: YVMEYKPHDA SLRDNSSYRN TWRG

Best Arabidopsis Sequence Match ( AT5G18110.1 )
(BLAST)

001: MEVLDRRDDE IRDSGNMDSI KSHYVTDSVS EERRSRELKD GDHPLRYKFS IWYTRRTPGV RNQSYEDNIK KMVEFSTVEG FWACYCHLAR SSLLPSPTDL
101: HFFKDGIRPL WEDGANCNGG KWIIRFSKVV SARFWEDLLL ALVGDQLDDA DNICGAVLSV RFNEDIISVW NRNASDHQAV MGLRDSIKRH LKLPHAYVME
201: YKPHDASLRD NSSYRNTWLR G

Arabidopsis Description

NCBPEukaryotic translation initiation factor NCBP [Source:UniProtKB/Swiss-Prot;Acc:Q9FK59]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.