Factsheet for Bra006439.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra003526.1-P
Bra004057.1-P
Bra004058.1-P
Bra004059.1-P
Bra004060.1-P
Bra020407.1-P
Bra022535.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G18110.1	Bra003526.1-P	AT3G45140.1	11117257
AT5G18110.1	Bra004057.1-P	AT3G45140.1	11117257
AT5G18110.1	Bra004058.1-P	AT3G45140.1	11117257
AT5G18110.1	Bra004059.1-P	AT3G45140.1	11117257
AT5G18110.1	Bra004060.1-P	AT3G45140.1	11117257
AT5G18110.1	Bra022535.1-P	AT3G45140.1	11117257
AT5G18110.1	Bra020407.1-P	AT5G57870.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX70795	Canola	cytosol	99.08	99.08
CDX78777	Canola	cytosol	98.62	98.62
AT5G18110.1	Thale cress	cytosol	81.65	80.54
Bra023664.1-P	Field mustard	cytosol	81.65	79.46
Bra002134.1-P	Field mustard	cytosol	65.6	75.66
VIT_08s0007g07290.t01	Wine grape	cytosol	76.15	73.78
PGSC0003DMT400060836	Potato	cytosol	74.77	73.09
KRH70165	Soybean	cytosol	76.61	71.98
Solyc10g080660.1.1	Tomato	cytosol, nucleus	73.39	71.75
GSMUA_Achr4P11110_001	Banana	cytosol	74.31	71.68
KRH08499	Soybean	cytosol	76.61	71.06
Os03t0262400-01	Rice	cytosol	72.94	70.04
GSMUA_Achr3P29580_001	Banana	cytosol	72.48	69.91
EER92511	Sorghum	cytosol	72.48	69.0
Zm00001d028515_P001	Maize	cytosol	72.48	69.0
HORVU4Hr1G061500.4	Barley	cytosol	72.48	68.1
TraesCS4A01G087900.1	Wheat	cytosol	72.48	68.1
TraesCS4D01G216800.1	Wheat	cytosol	72.48	68.1
TraesCS4B01G216300.1	Wheat	cytosol	72.02	67.67
HORVU2Hr1G094490.1	Barley	plastid	36.24	48.17
Bra012622.1-P	Field mustard	cytosol	19.27	32.06
Bra035531.1-P	Field mustard	cytosol	26.61	29.0
Bra039484.1-P	Field mustard	cytosol	24.77	27.27
Bra035393.1-P	Field mustard	cytosol	24.31	26.63
Bra013283.1-P	Field mustard	cytosol	27.06	25.88
Bra021026.1-P	Field mustard	cytosol	26.61	24.79
Bra030147.1-P	Field mustard	cytosol	24.31	21.72
Bra032325.1-P	Field mustard	cytosol	24.31	21.37

Protein Annotations

MapMan:17.4.2.6	Gene3D:3.30.760.10	EnsemblPlantsGene:Bra006439	EnsemblPlants:Bra006439.1	EnsemblPlants:Bra006439.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003743	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006412	GO:GO:0006413	GO:GO:0008135	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	InterPro:IPR023398	UniProt:M4CQF0
PFAM:PF01652	ScanProsite:PS00813	PANTHER:PTHR11960	PANTHER:PTHR11960:SF18	SUPFAM:SSF55418	InterPro:TIF_eIF4e-like
InterPro:TIF_eIF_4E	InterPro:TIF_eIF_4E_CS	UniParc:UPI000253FE53	:	:	:

Description

AT5G18110 (E=4e-115) NCBP | NCBP (NOVEL CAP-BINDING PROTEIN); RNA binding / translation initiation factor

Coordinates

chrA03:-:3494196..3495491

Molecular Weight (calculated)

25389.9 Da

IEP (calculated)

7.180

GRAVY (calculated)

-0.605

Length

218 amino acids

Sequence
(BLAST)

001: MEIAERRDEE MRESGNMENI KSDSFSDERY SRDLKAGLHP LRYKFAIWYT RRTPGVRSQT SYEDNIKKIV DFSTVEGFWA CYCHLARSSL LPSPTDLHFF
101: KDGIRPLWED SANCNGGKWI IRFSKVVSAR FWEDLLLALV GDQLDDADNI CGAVLSVRFN EDIISVWNRN ASDHQAVMGL RDSIKRHLKL PHSYVMEYKP
201: HDASLRDNSS YRNTWMRG

Best Arabidopsis Sequence Match ( AT5G18110.1 )
(BLAST)

001: MEVLDRRDDE IRDSGNMDSI KSHYVTDSVS EERRSRELKD GDHPLRYKFS IWYTRRTPGV RNQSYEDNIK KMVEFSTVEG FWACYCHLAR SSLLPSPTDL
101: HFFKDGIRPL WEDGANCNGG KWIIRFSKVV SARFWEDLLL ALVGDQLDDA DNICGAVLSV RFNEDIISVW NRNASDHQAV MGLRDSIKRH LKLPHAYVME
201: YKPHDASLRD NSSYRNTWLR G

Arabidopsis Description

NCBPEukaryotic translation initiation factor NCBP [Source:UniProtKB/Swiss-Prot;Acc:Q9FK59]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.