Factsheet for Bra035393.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra003526.1-P
Bra004057.1-P
Bra004058.1-P
Bra004059.1-P
Bra004060.1-P
Bra016579.1-P
Bra020407.1-P
Bra022535.1-P
Bra025940.1-P
Bra031007.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G35620.1	Bra016579.1-P	AT1G17880.1	15716105
AT5G35620.1	Bra025940.1-P	AT1G17880.1	15716105
AT5G35620.1	Bra031007.1-P	AT1G17880.1	15716105
AT5G35620.1	Bra003526.1-P	AT3G45140.1	11117257
AT5G35620.1	Bra004057.1-P	AT3G45140.1	11117257
AT5G35620.1	Bra004058.1-P	AT3G45140.1	11117257
AT5G35620.1	Bra004059.1-P	AT3G45140.1	11117257
AT5G35620.1	Bra004060.1-P	AT3G45140.1	11117257
AT5G35620.1	Bra022535.1-P	AT3G45140.1	11117257
AT5G35620.1	Bra020407.1-P	AT5G57870.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra039484.1-P	Field mustard	cytosol	90.95	91.41
CDX74645	Canola	cytosol	99.5	86.84
AT5G35620.1	Thale cress	cytosol	85.43	85.86
Bra035531.1-P	Field mustard	cytosol	81.41	81.0
Solyc09g090580.2.1	Tomato	nucleus	68.84	68.5
PGSC0003DMT400044186	Potato	cytosol	66.33	66.0
GSMUA_Achr4P25000_001	Banana	cytosol	63.32	65.62
VIT_05s0049g01770.t01	Wine grape	cytosol	66.83	65.2
Os10t0467600-01	Rice	cytosol, plastid	62.31	60.19
Zm00001d032775_P002	Maize	cytosol, extracellular	63.32	60.0
KRG90357	Soybean	endoplasmic reticulum	59.8	59.5
TraesCS1B01G167100.1	Wheat	cytosol	62.31	59.33
EER94108	Sorghum	cytosol	62.31	59.05
KRH33614	Soybean	cytosol	60.3	58.54
TraesCS1D01G146500.1	Wheat	golgi	61.31	58.37
HORVU1Hr1G039260.2	Barley	cytosol	61.31	58.1
GSMUA_Achr5P12940_001	Banana	cytosol	60.3	57.42
TraesCS1A01G149200.1	Wheat	cytosol	61.31	57.28
Zm00001d014065_P001	Maize	cytosol, extracellular	61.31	56.48
Bra012622.1-P	Field mustard	cytosol	32.16	48.85
Bra013283.1-P	Field mustard	cytosol	42.71	37.28
Bra021026.1-P	Field mustard	cytosol	42.71	36.32
Bra030147.1-P	Field mustard	cytosol	39.7	32.38
Bra032325.1-P	Field mustard	cytosol	39.2	31.45
Bra002134.1-P	Field mustard	cytosol	23.62	24.87
Bra006439.1-P	Field mustard	cytosol	26.63	24.31
Bra023664.1-P	Field mustard	cytosol	26.13	23.21

Protein Annotations

MapMan:17.4.2.4.1	Gene3D:3.30.760.10	EnsemblPlantsGene:Bra035393	EnsemblPlants:Bra035393.1	EnsemblPlants:Bra035393.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003743	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006412	GO:GO:0006413	GO:GO:0008135	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	InterPro:IPR023398	UniProt:M4F2U4
PFAM:PF01652	ScanProsite:PS00813	PANTHER:PTHR11960	PANTHER:PTHR11960:SF12	SUPFAM:SSF55418	InterPro:TIF_eIF4e-like
InterPro:TIF_eIF_4E	InterPro:TIF_eIF_4E_CS	UniParc:UPI000253E635	SEG:seg	:	:

Description

AT5G35620 (E=9e-092) LSP1, EIF(ISO)4E, LSP, EIF4E2 | LSP1 (LOSS OF SUSCEPTIBILITY TO POTYVIRUS 1); RNA 7-methylguanosine cap binding / RNA binding / translation initiation factor

Coordinates

chrScaffold000104:+:555722..557040

Molecular Weight (calculated)

22552.6 Da

IEP (calculated)

5.410

GRAVY (calculated)

-0.549

Length

199 amino acids

Sequence
(BLAST)

001: MATEDVNEAL AAAEVPATET TEKQPADKLE RKWSFWFDNQ SKPKQGAAWG ASLRKAYTFD TVQDFWGLHE TIFIPSKLTP NAEIHMFKAG VEPKWEDPEC
101: ANGGKWTFVV TSNRKPALDK AWLETLMALV GEQFDEADEI CGVVASVRPK QDKLSLWTRT KSNEAVLMGI GKKWKEILDV TDKITFTNHD DSRRTRFTV

Best Arabidopsis Sequence Match ( AT5G35620.3 )
(BLAST)

001: MATDDVNEPL PAAAELPATE AEKQPHKLER KWSFWFDNQS KKGAAWGASL RKAYTFDTVE DFWGLHETIF QTSKLTANAE IHLFKAGVEP KWEDPECANG
101: GKWTWVVTAN RKEALDKGWL ETLMALIGEQ FDEADEICGV VASVRPQSKQ DKLSLWTRTK SNEAVLMGIG KKWKEILDVT DKITFNNHDD SRRSRFTV

Arabidopsis Description

EIF(ISO)4ELSP1 [Source:UniProtKB/TrEMBL;Acc:A0A178UEE3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.