Factsheet for Bra016579.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
nucleus 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra035393.1-P
Bra035531.1-P
Bra039484.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G17880.1	Bra035393.1-P	AT5G35620.1	15716105
AT1G17880.1	Bra035531.1-P	AT5G35620.1	15716105
AT1G17880.1	Bra039484.1-P	AT5G35620.1	15716105

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX83885	Canola	mitochondrion	48.37	98.79
Bra031007.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	40.36	87.18
Bra025940.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	40.95	83.13
CDX96745	Canola	cytosol, golgi, mitochondrion, plastid	96.74	82.12
AT1G17880.1	Thale cress	mitochondrion	39.76	81.21
Bra008086.1-P	Field mustard	mitochondrion	40.06	80.84
KRH29395	Soybean	cytosol	38.28	79.63
KRH24412	Soybean	endoplasmic reticulum	37.69	78.88
Bra003851.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	38.28	78.66
Bra016010.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	38.58	78.31
PGSC0003DMT400022830	Potato	cytosol	35.61	77.92
KRH29394	Soybean	cytosol, mitochondrion, nucleus, plastid	37.39	77.78
Solyc07g008720.2.1	Tomato	nucleus	37.39	77.78
PGSC0003DMT400073918	Potato	cytosol	35.31	77.27
Solyc09g010330.2.1	Tomato	nucleus	37.09	77.16
VIT_17s0053g00620.t01	Wine grape	cytosol, mitochondrion, nucleus, plastid	36.2	76.25
GSMUA_Achr6P08310_001	Banana	cytosol	35.61	75.95
KRH75358	Soybean	endoplasmic reticulum	35.61	75.47
GSMUA_Achr3P18580_001	Banana	cytosol	35.01	74.68
Zm00001d013999_P001	Maize	plastid	35.61	72.73
Zm00001d032668_P001	Maize	plastid	35.31	72.12
EER91468	Sorghum	cytosol	35.31	71.69
TraesCS1D01G156700.1	Wheat	cytosol	35.01	70.66
Zm00001d048526_P001	Maize	extracellular	33.23	68.71
TraesCS1B01G175700.1	Wheat	mitochondrion	35.61	68.57
EER93008	Sorghum	cytosol	33.83	68.26
Zm00001d027318_P001	Maize	extracellular, mitochondrion, plastid	34.12	68.05
TraesCS1A01G159300.1	Wheat	cytosol, nucleus, plastid	35.31	68.0
TraesCS5A01G550800.1	Wheat	cytosol	35.31	67.23
TraesCSU01G127100.1	Wheat	cytosol	35.31	67.23
Os03t0109600-01	Rice	plasma membrane	34.42	66.29
GSMUA_Achr6P16240_001	Banana	golgi, vacuole	35.61	64.17
GSMUA_AchrUn_...	Banana	plastid	36.5	63.73
TraesCS4B01G385900.2	Wheat	plastid	35.91	63.35
GSMUA_Achr10P...	Banana	plastid	35.31	58.05
HORVU4Hr1G090110.2	Barley	plastid	35.31	56.67
HORVU1Hr1G042270.1	Barley	nucleus, peroxisome, plastid	37.98	47.41
Solyc06g050640.1.1	Tomato	mitochondrion	9.2	44.93

Protein Annotations

MapMan:19.1.2.1.2	Gene3D:2.20.70.30	Gene3D:3.40.50.720	Gene3D:3.90.25.10	EnsemblPlantsGene:Bra016579	EnsemblPlants:Bra016579.1
EnsemblPlants:Bra016579.1-P	InterPro:Epimerase_deHydtase	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0050662	InterPro:IPR002715	InterPro:IPR038187	UniProt:M4DJA1	InterPro:NAC_A/B_dom_sf	InterPro:NAD(P)-bd_dom_sf
InterPro:Nas_poly-pep-assoc_cplx_dom	PFAM:PF01370	PFAM:PF01849	PFscan:PS51151	PANTHER:PTHR43238	PANTHER:PTHR43238:SF3
SMART:SM01407	SUPFAM:SSF51735	UniParc:UPI00025454CA	SEG:seg	:	:

Description

AT1G73230 (E=5e-056) | nascent polypeptide-associated complex (NAC) domain-containing protein

Coordinates

chrA08:+:19141079..19143623

Molecular Weight (calculated)

36766.6 Da

IEP (calculated)

5.301

GRAVY (calculated)

-0.365

Length

337 amino acids

Sequence
(BLAST)

001: MADATGSGSF MSEKTAKIFV AGHRGLVGSA IVRKLEKSGF TNLLLKTHSE LDLTNQSDVE SFFATEKPAY VILGGIHANN TYPADFISAN DAEEVVVWGS
101: GTPLREFLHV DDLADACVFL MERYSGFEHV NVGSGVEMTI KELAEFVKEV VGFEGKLVWD CKTQNPNHQN LKMNREKLMK MANTVRTGGK GTVRRKKKAV
201: HKTNTTDDKK LQSTLKRIGV NSIPAIEEVN IFKDDVVIQF TNPKVQASVG ANTWVVSGSP QTKKLEDILP QILSHLGPDN MENLKKLAEQ FKKQSPGGGN
301: VPATIQEDDD EDDDVPELVA GETFEAAAEE KVAAASS

Best Arabidopsis Sequence Match ( AT1G73230.1 )
(BLAST)

001: MNREKLMKMA NTVRTGGKGT VRRKKKAVHK TTTTDDKRLQ STLKRVGVNS IPAIEEVNIF KDDVVIQFIN PKVQASIAAN TWVVSGTPQT KKLQDILPQI
101: ISQLGPDNLD NLKKLAEQFQ KQAPGAGDVP ATIQEEDDDD DVPDLVVGET FETPATEEAP KAAAS

Arabidopsis Description

Nascent polypeptide-associated complex subunit beta [Source:UniProtKB/Swiss-Prot;Acc:Q9CAT7]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.