Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid, extracellular
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
extracellular:
20408568
plastid: 23198870 mitochondrion: 27297264 |
msms PMID:
27297264
doi
Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d014065_P001 | |
| Zm00001d032775_P002 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G17880.1 | Zm00001d014065_P001 | AT5G35620.1 | 15716105 |
| AT1G17880.1 | Zm00001d032775_P002 | AT5G35620.1 | 15716105 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER93008 | Sorghum | cytosol | 93.49 | 94.61 |
| Zm00001d048526_P001 | Maize | extracellular | 85.21 | 88.34 |
| Zm00001d032668_P001 | Maize | plastid | 82.25 | 84.24 |
| Os03t0109600-01 | Rice | plasma membrane | 86.98 | 84.0 |
| TraesCS5A01G550800.1 | Wheat | cytosol | 87.57 | 83.62 |
| TraesCSU01G127100.1 | Wheat | cytosol | 86.98 | 83.05 |
| Zm00001d013999_P001 | Maize | plastid | 79.88 | 81.82 |
| Solyc09g010330.2.1 | Tomato | nucleus | 75.15 | 78.4 |
| Solyc07g008720.2.1 | Tomato | nucleus | 75.15 | 78.4 |
| KRH75358 | Soybean | endoplasmic reticulum | 73.37 | 77.99 |
| PGSC0003DMT400022830 | Potato | cytosol | 71.01 | 77.92 |
| VIT_17s0053g00620.t01 | Wine grape | cytosol, mitochondrion, nucleus, plastid | 73.37 | 77.5 |
| TraesCS4B01G385900.2 | Wheat | plastid | 86.98 | 76.96 |
| PGSC0003DMT400073918 | Potato | cytosol | 69.82 | 76.62 |
| KRH29394 | Soybean | cytosol, mitochondrion, nucleus, plastid | 72.78 | 75.93 |
| KRH29395 | Soybean | cytosol | 72.78 | 75.93 |
| Zm00001d034855_P001 | Maize | extracellular | 70.41 | 75.32 |
| KRH24412 | Soybean | endoplasmic reticulum | 71.6 | 75.16 |
| AT1G17880.1 | Thale cress | mitochondrion | 70.41 | 72.12 |
| Bra008086.1-P | Field mustard | mitochondrion | 70.41 | 71.26 |
| HORVU4Hr1G090110.2 | Barley | plastid | 88.17 | 70.95 |
| AT1G73230.1 | Thale cress | mitochondrion | 69.23 | 70.91 |
| Bra003851.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 68.05 | 70.12 |
| Bra016010.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 68.64 | 69.88 |
| CDX96457 | Canola | cytosol, mitochondrion, nucleus, plastid | 68.64 | 69.88 |
| CDY26207 | Canola | cytosol, mitochondrion, nucleus, plastid | 68.05 | 69.28 |
| Bra025940.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 68.05 | 69.28 |
| CDX72966 | Canola | cytosol, mitochondrion, nucleus, plastid | 68.05 | 69.28 |
| CDY21729 | Canola | cytosol, mitochondrion, nucleus, plastid | 63.91 | 69.23 |
| Bra031007.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 63.91 | 69.23 |
| CDX68236 | Canola | cytosol, mitochondrion, nucleus, plastid | 67.46 | 69.09 |
| CDX81852 | Canola | cytosol, mitochondrion, nucleus, plastid | 66.27 | 68.71 |
| CDX83885 | Canola | mitochondrion | 66.86 | 68.48 |
| CDY19183 | Canola | mitochondrion | 68.64 | 65.54 |
| GSMUA_Achr1P02000_001 | Banana | plastid | 77.51 | 60.65 |
| CDX82088 | Canola | mitochondrion | 70.41 | 55.35 |
| CDY11119 | Canola | mitochondrion | 68.05 | 52.51 |
| CDY65091 | Canola | mitochondrion | 71.01 | 52.17 |
| Solyc06g050640.1.1 | Tomato | mitochondrion | 19.53 | 47.83 |
| Bra016579.1-P | Field mustard | cytosol | 68.05 | 34.12 |
| CDX96745 | Canola | cytosol, golgi, mitochondrion, plastid | 67.46 | 28.72 |
Protein Annotations
| EntrezGene:100422791 | MapMan:19.1.2.1.2 | Gene3D:2.20.70.30 | UniProt:B6SVI7 | EMBL:BT088041 | EMBL:EU956752 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | InterPro:IPR002715 | InterPro:IPR038187 | InterPro:NAC_A/B_dom_sf | InterPro:Nas_poly-pep-assoc_cplx_dom | ProteinID:ONL92770.1 |
| PFAM:PF01849 | PFscan:PS51151 | PANTHER:PTHR10351 | PANTHER:PTHR10351:SF47 | SMART:SM01407 | UniParc:UPI000182B8CC |
| EnsemblPlantsGene:Zm00001d027318 | EnsemblPlants:Zm00001d027318_P001 | EnsemblPlants:Zm00001d027318_T001 | SEG:seg | : | : |
Description
BTF3 homolog
Coordinates
chr1:-:2827035..2829836
Molecular Weight (calculated)
18480.0 Da
IEP (calculated)
5.395
GRAVY (calculated)
-0.627
Length
169 amino acids
Sequence
(BLAST)
(BLAST)
001: MNVEKLKKMA GAVRTGGKGS MRRKKKAVHK TATTDDKRLQ STLKRIGVNT IPGIEEVNIF KDDIVIQFQN PKVQASIPAN TWVVSGVPQT KSLQDLLPTI
101: INQLGPDNLE NLKRLAEHFQ KQVPGAEASA SAAAQDDDDV PELVPGETFE EAAEVKEVPE AEPEEKKES
101: INQLGPDNLE NLKRLAEHFQ KQVPGAEASA SAAAQDDDDV PELVPGETFE EAAEVKEVPE AEPEEKKES
001: MNREKLMKMA NTVRTGGKGT VRRKKKAVHK TNTTDDKRLQ STLKRIGVNS IPAIEEVNIF KDDVVIQFIN PKVQASIAAN TWVVSGSPQT KKLQDILPQI
101: ISQLGPDNMD NLKKLAEQFQ KQASGEGNAA SATIQEEDDD DVPELVGETF ETAAEEKAPA AAASS
101: ISQLGPDNMD NLKKLAEQFQ KQASGEGNAA SATIQEEDDD DVPELVGETF ETAAEEKAPA AAASS
Arabidopsis Description
BTF3Basic transcription factor 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SMW7]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.