Factsheet for Zm00001d034855_P001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

peroxisome 1
mitochondrion 3
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	mitochondrion, nucleus, peroxisome
MultiLoc:	peroxisome
Predotar:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	nucleus

extracellular: 20408568

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER93092	Sorghum	cytosol, mitochondrion, nucleus, peroxisome	96.2	96.2
Os03t0851000-01	Rice	cytosol, mitochondrion, nucleus, peroxisome	92.41	92.41
TraesCS4A01G332100.1	Wheat	golgi, unclear	91.77	92.36
Zm00001d032668_P001	Maize	plastid	77.85	74.55
Zm00001d013999_P001	Maize	plastid	76.58	73.33
Zm00001d048526_P001	Maize	extracellular	72.78	70.55
Zm00001d027318_P001	Maize	extracellular, mitochondrion, plastid	75.32	70.41
HORVU5Hr1G122170.4	Barley	plastid	83.54	62.86
HORVU6Hr1G018230.1	Barley	plastid	38.61	50.0

Protein Annotations

EntrezGene:100193616	MapMan:19.1.2.1.2	Gene3D:2.20.70.30	UniProt:B4FFP6	EMBL:BT035934	ncoils:Coil
EMBL:EU967294	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR002715	InterPro:IPR038187	InterPro:NAC_A/B_dom_sf	InterPro:Nas_poly-pep-assoc_cplx_dom
ProteinID:ONM11610.1	ProteinID:ONM11611.1	PFAM:PF01849	PFscan:PS51151	PANTHER:PTHR10351	PANTHER:PTHR10351:SF47
SMART:SM01407	UniParc:UPI00017B7239	EnsemblPlantsGene:Zm00001d034855	EnsemblPlants:Zm00001d034855_P001	EnsemblPlants:Zm00001d034855_T001	SEG:seg

Description

Basic transcription factor 3

Coordinates

chr1:+:303826078..303828317

Molecular Weight (calculated)

17315.9 Da

IEP (calculated)

9.630

GRAVY (calculated)

-0.513

Length

158 amino acids

Sequence
(BLAST)

001: MNKERLMKMA GAVRTGGKGT MRRKKKAVHK TVTTDDKRLQ GTLKRVGVNT IPAIEEVNIF KDDLVIQFLN PKVQASIAAN TWVVSGSPQT KKLQDVLPGI
101: INQLGPDNME HLKRIAEEMQ KQVAAAGAAA QVKEDNDDDV PELVPGETFE EVAQETKA

Best Arabidopsis Sequence Match ( AT1G17880.1 )
(BLAST)

001: MNREKLMKMA NTVRTGGKGT VRRKKKAVHK TNTTDDKRLQ STLKRIGVNS IPAIEEVNIF KDDVVIQFIN PKVQASIAAN TWVVSGSPQT KKLQDILPQI
101: ISQLGPDNMD NLKKLAEQFQ KQASGEGNAA SATIQEEDDD DVPELVGETF ETAAEEKAPA AAASS

Arabidopsis Description

BTF3Basic transcription factor 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SMW7]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.