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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion, peroxisome, nucleus, cytosol

Predictor Summary:
  • nucleus 4
  • peroxisome 1
  • mitochondrion 2
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, mitochondrion, nucleus, peroxisome
Any Predictor:cytosol, mitochondrion, nucleus, peroxisome
BaCelLo:nucleus
EpiLoc:nucleus
MultiLoc:peroxisome
Plant-mPloc:nucleus
Predotar:mitochondrion
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:nucleus
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d034855_P001 Maize extracellular 96.2 96.2
Os03t0851000-01 Rice cytosol, mitochondrion, nucleus, peroxisome 94.94 94.94
TraesCS4A01G332100.1 Wheat golgi, unclear 93.67 94.27
EER91468 Sorghum cytosol 76.58 72.89
EER93008 Sorghum cytosol 74.68 70.66
HORVU5Hr1G122170.4 Barley plastid 85.44 64.29
HORVU6Hr1G018230.1 Barley plastid 39.24 50.82
Protein Annotations
MapMan:19.1.2.1.2Gene3D:2.20.70.30EntrezGene:8060868UniProt:C5WSV6ncoils:CoilEnsemblPlants:EER93092
ProteinID:EER93092ProteinID:EER93092.1GO:GO:0006139GO:GO:0006351GO:GO:0006355GO:GO:0008150
GO:GO:0008152GO:GO:0009058GO:GO:0009987InterPro:IPR002715InterPro:IPR038187InterPro:NAC_A/B_dom_sf
InterPro:Nas_poly-pep-assoc_cplx_domPFAM:PF01849PFscan:PS51151PANTHER:PTHR10351PANTHER:PTHR10351:SF47SMART:SM01407
EnsemblPlantsGene:SORBI_3001G011200unigene:Sbi.19307UniParc:UPI0001A82820RefSeq:XP_002466094.1SEG:seg:
Description
hypothetical protein
Coordinates
chr1:-:987109..989382
Molecular Weight (calculated)
17255.8 Da
IEP (calculated)
9.630
GRAVY (calculated)
-0.514
Length
158 amino acids
Sequence
(BLAST)
001: MNKERLMKMA GAVRTGGKGT VRRKKKAVHK TGTTDDKRLQ STLKRVGVNT IPAIEEVNIF KDDLVIQFLN PKVQASIAAN TWVVSGSPQT KKLQDVLPGI
101: INQLGPDNME HLKRIAEEMQ KQVAAAGAAA QVKEENDDDV PELVPGETFE EVAQEAKA
Best Arabidopsis Sequence Match ( AT1G17880.1 )
(BLAST)
001: MNREKLMKMA NTVRTGGKGT VRRKKKAVHK TNTTDDKRLQ STLKRIGVNS IPAIEEVNIF KDDVVIQFIN PKVQASIAAN TWVVSGSPQT KKLQDILPQI
101: ISQLGPDNMD NLKKLAEQFQ KQASGEGNAA SATIQEEDDD DVPELVGETF ETAAEEKAPA AAASS
Arabidopsis Description
BTF3Basic transcription factor 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SMW7]
SUBAcon: [mitochondrion]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.