Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| EER94108 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G17880.1 | EER94108 | AT5G35620.1 | 15716105 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d027318_P001 | Maize | extracellular, mitochondrion, plastid | 94.61 | 93.49 |
| Zm00001d048526_P001 | Maize | extracellular | 87.43 | 89.57 |
| EER91468 | Sorghum | cytosol | 85.63 | 86.14 |
| TraesCSU01G127100.1 | Wheat | cytosol | 91.02 | 85.88 |
| Os03t0109600-01 | Rice | plasma membrane | 89.82 | 85.71 |
| TraesCS5A01G550800.1 | Wheat | cytosol | 90.42 | 85.31 |
| VIT_17s0053g00620.t01 | Wine grape | cytosol, mitochondrion, nucleus, plastid | 75.45 | 78.75 |
| PGSC0003DMT400022830 | Potato | cytosol | 72.46 | 78.57 |
| TraesCS4B01G385900.2 | Wheat | plastid | 89.82 | 78.53 |
| Solyc09g010330.2.1 | Tomato | nucleus | 76.05 | 78.4 |
| Solyc07g008720.2.1 | Tomato | nucleus | 76.05 | 78.4 |
| KRH29395 | Soybean | cytosol | 75.45 | 77.78 |
| KRH29394 | Soybean | cytosol, mitochondrion, nucleus, plastid | 75.45 | 77.78 |
| KRH75358 | Soybean | endoplasmic reticulum | 73.65 | 77.36 |
| PGSC0003DMT400073918 | Potato | cytosol | 71.26 | 77.27 |
| KRH24412 | Soybean | endoplasmic reticulum | 74.25 | 77.02 |
| EER93092 | Sorghum | cytosol, mitochondrion, nucleus, peroxisome | 70.66 | 74.68 |
| AT1G17880.1 | Thale cress | mitochondrion | 72.46 | 73.33 |
| AT1G73230.1 | Thale cress | mitochondrion | 71.86 | 72.73 |
| HORVU4Hr1G090110.2 | Barley | plastid | 91.02 | 72.38 |
| Bra008086.1-P | Field mustard | mitochondrion | 71.86 | 71.86 |
| Bra003851.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 70.06 | 71.34 |
| CDX68236 | Canola | cytosol, mitochondrion, nucleus, plastid | 69.46 | 70.3 |
| CDX81852 | Canola | cytosol, mitochondrion, nucleus, plastid | 68.26 | 69.94 |
| CDY26207 | Canola | cytosol, mitochondrion, nucleus, plastid | 69.46 | 69.88 |
| Bra016010.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 69.46 | 69.88 |
| Bra025940.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 69.46 | 69.88 |
| CDX72966 | Canola | cytosol, mitochondrion, nucleus, plastid | 69.46 | 69.88 |
| CDX96457 | Canola | cytosol, mitochondrion, nucleus, plastid | 69.46 | 69.88 |
| Bra031007.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 65.27 | 69.87 |
| CDY21729 | Canola | cytosol, mitochondrion, nucleus, plastid | 65.27 | 69.87 |
| CDX83885 | Canola | mitochondrion | 67.07 | 67.88 |
| CDY19183 | Canola | mitochondrion | 69.46 | 65.54 |
| GSMUA_Achr1P02000_001 | Banana | plastid | 77.25 | 59.72 |
| CDX82088 | Canola | mitochondrion | 71.86 | 55.81 |
| CDY65091 | Canola | mitochondrion | 73.05 | 53.04 |
| CDY11119 | Canola | mitochondrion | 69.46 | 52.97 |
| Solyc06g050640.1.1 | Tomato | mitochondrion | 19.16 | 46.38 |
| Bra016579.1-P | Field mustard | cytosol | 68.26 | 33.83 |
| CDX96745 | Canola | cytosol, golgi, mitochondrion, plastid | 67.66 | 28.46 |
Protein Annotations
| MapMan:19.1.2.1.2 | Gene3D:2.20.70.30 | EntrezGene:8078022 | UniProt:C5WMP6 | EnsemblPlants:EER93008 | ProteinID:EER93008 |
| ProteinID:EER93008.1 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR002715 | InterPro:IPR038187 | InterPro:NAC_A/B_dom_sf | InterPro:Nas_poly-pep-assoc_cplx_dom |
| PFAM:PF01849 | PFscan:PS51151 | PANTHER:PTHR10351 | PANTHER:PTHR10351:SF47 | SMART:SM01407 | EnsemblPlantsGene:SORBI_3001G537200 |
| unigene:Sbi.1587 | UniParc:UPI0001A826D4 | RefSeq:XP_002466010.1 | SEG:seg | : | : |
Description
hypothetical protein
Coordinates
chr1:+:80019762..80022413
Molecular Weight (calculated)
18320.8 Da
IEP (calculated)
5.871
GRAVY (calculated)
-0.725
Length
167 amino acids
Sequence
(BLAST)
(BLAST)
001: MNVDKLKKMA GAVRTGGKGS MRRKKKAVHK TTTTDDKRLQ STLKRIGVNT IPGIEEVNIF KDDVVIQFQN PKVQASIPAN TWVVSGVPQT KSLQDLLPSI
101: INQLGPDNLD NLKRLAEHFQ KQVPGAEAGA AAQDDDDVPE LVPGETFEEA AEEKKVPEPE PEEKKES
101: INQLGPDNLD NLKRLAEHFQ KQVPGAEAGA AAQDDDDVPE LVPGETFEEA AEEKKVPEPE PEEKKES
001: MNREKLMKMA NTVRTGGKGT VRRKKKAVHK TNTTDDKRLQ STLKRIGVNS IPAIEEVNIF KDDVVIQFIN PKVQASIAAN TWVVSGSPQT KKLQDILPQI
101: ISQLGPDNMD NLKKLAEQFQ KQASGEGNAA SATIQEEDDD DVPELVGETF ETAAEEKAPA AAASS
101: ISQLGPDNMD NLKKLAEQFQ KQASGEGNAA SATIQEEDDD DVPELVGETF ETAAEEKAPA AAASS
Arabidopsis Description
BTF3Basic transcription factor 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SMW7]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.