Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 2
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G17880.1 | KRG90357 | AT5G35620.1 | 15716105 |
| AT1G17880.1 | KRH33614 | AT5G35620.1 | 15716105 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH24412 | Soybean | endoplasmic reticulum | 98.15 | 98.76 |
| KRH29395 | Soybean | cytosol | 95.06 | 95.06 |
| KRH75358 | Soybean | endoplasmic reticulum | 86.42 | 88.05 |
| Solyc09g010330.2.1 | Tomato | nucleus | 85.19 | 85.19 |
| Solyc07g008720.2.1 | Tomato | nucleus | 85.19 | 85.19 |
| PGSC0003DMT400073918 | Potato | cytosol | 80.25 | 84.42 |
| PGSC0003DMT400022830 | Potato | cytosol | 80.25 | 84.42 |
| VIT_17s0053g00620.t01 | Wine grape | cytosol, mitochondrion, nucleus, plastid | 83.33 | 84.38 |
| GSMUA_Achr6P08310_001 | Banana | cytosol | 80.86 | 82.91 |
| AT1G17880.1 | Thale cress | mitochondrion | 83.33 | 81.82 |
| Zm00001d032668_P001 | Maize | plastid | 82.1 | 80.61 |
| AT1G73230.1 | Thale cress | mitochondrion | 81.48 | 80.0 |
| GSMUA_Achr3P18580_001 | Banana | cytosol | 77.78 | 79.75 |
| Zm00001d013999_P001 | Maize | plastid | 80.86 | 79.39 |
| CDX81852 | Canola | cytosol, mitochondrion, nucleus, plastid | 79.63 | 79.14 |
| TraesCS1D01G156700.1 | Wheat | cytosol | 81.48 | 79.04 |
| CDX96457 | Canola | cytosol, mitochondrion, nucleus, plastid | 80.25 | 78.31 |
| Bra016010.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 80.25 | 78.31 |
| EER91468 | Sorghum | cytosol | 80.25 | 78.31 |
| Bra003851.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 79.01 | 78.05 |
| CDY26207 | Canola | cytosol, mitochondrion, nucleus, plastid | 79.63 | 77.71 |
| Bra025940.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 79.63 | 77.71 |
| CDX72966 | Canola | cytosol, mitochondrion, nucleus, plastid | 79.01 | 77.11 |
| Bra008086.1-P | Field mustard | mitochondrion | 79.01 | 76.65 |
| CDX68236 | Canola | cytosol, mitochondrion, nucleus, plastid | 77.78 | 76.36 |
| CDY21729 | Canola | cytosol, mitochondrion, nucleus, plastid | 73.46 | 76.28 |
| Bra031007.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 73.46 | 76.28 |
| TraesCS1B01G175700.1 | Wheat | mitochondrion | 82.1 | 76.0 |
| Zm00001d048526_P001 | Maize | extracellular | 75.93 | 75.46 |
| EER93008 | Sorghum | cytosol | 77.78 | 75.45 |
| CDX83885 | Canola | mitochondrion | 76.54 | 75.15 |
| TraesCS1A01G159300.1 | Wheat | cytosol, nucleus, plastid | 80.86 | 74.86 |
| CDY19183 | Canola | mitochondrion | 79.63 | 72.88 |
| Zm00001d027318_P001 | Maize | extracellular, mitochondrion, plastid | 75.93 | 72.78 |
| Os03t0109600-01 | Rice | plasma membrane | 77.78 | 72.0 |
| TraesCS5A01G550800.1 | Wheat | cytosol | 77.16 | 70.62 |
| TraesCSU01G127100.1 | Wheat | cytosol | 77.16 | 70.62 |
| GSMUA_Achr6P16240_001 | Banana | golgi, vacuole | 80.25 | 69.52 |
| GSMUA_AchrUn_... | Banana | plastid | 81.48 | 68.39 |
| TraesCS4B01G385900.2 | Wheat | plastid | 77.78 | 65.97 |
| GSMUA_Achr10P... | Banana | plastid | 80.86 | 63.9 |
| HORVU4Hr1G090110.2 | Barley | plastid | 78.4 | 60.48 |
| CDX82088 | Canola | mitochondrion | 79.01 | 59.53 |
| CDY11119 | Canola | mitochondrion | 78.4 | 57.99 |
| CDY65091 | Canola | mitochondrion | 79.63 | 56.09 |
| Solyc06g050640.1.1 | Tomato | mitochondrion | 23.46 | 55.07 |
| HORVU1Hr1G042270.1 | Barley | nucleus, peroxisome, plastid | 81.48 | 48.89 |
| Bra016579.1-P | Field mustard | cytosol | 77.78 | 37.39 |
| CDX96745 | Canola | cytosol, golgi, mitochondrion, plastid | 77.16 | 31.49 |
Protein Annotations
| EntrezGene:100499834 | MapMan:19.1.2.1.2 | Gene3D:2.20.70.30 | EMBL:ACUP02006800 | EMBL:BT089777 | UniProt:C6SX83 |
| EnsemblPlantsGene:GLYMA_11G113900 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR002715 | InterPro:IPR038187 | ProteinID:KRH29393.1 | EnsemblPlants:KRH29394 |
| ProteinID:KRH29394 | ProteinID:KRH29394.1 | InterPro:NAC_A/B_dom_sf | InterPro:Nas_poly-pep-assoc_cplx_dom | PFAM:PF01849 | PFscan:PS51151 |
| PANTHER:PTHR10351 | PANTHER:PTHR10351:SF47 | SMART:SM01407 | UniParc:UPI0001B15217 | SEG:seg | : |
Description
hypothetical protein
Coordinates
chr11:+:8707654..8716722
Molecular Weight (calculated)
17696.0 Da
IEP (calculated)
7.696
GRAVY (calculated)
-0.641
Length
162 amino acids
Sequence
(BLAST)
(BLAST)
001: MNREKLMKMA GSVRTGGKGT MRRKKKAVHK TTTTDDKRLQ STLKRIGVNA IPAIEEVNIF KDDVVIQFLN PKVQASIAAN TWVVSGSPQT KKLQDILPSI
101: IHQLGPDNLE NLKKLAEQFQ KQAPEGAAGS TTAQEENDDD DVPELVPGQD FETAAEETKA AS
101: IHQLGPDNLE NLKKLAEQFQ KQAPEGAAGS TTAQEENDDD DVPELVPGQD FETAAEETKA AS
001: MNREKLMKMA NTVRTGGKGT VRRKKKAVHK TNTTDDKRLQ STLKRIGVNS IPAIEEVNIF KDDVVIQFIN PKVQASIAAN TWVVSGSPQT KKLQDILPQI
101: ISQLGPDNMD NLKKLAEQFQ KQASGEGNAA SATIQEEDDD DVPELVGETF ETAAEEKAPA AAASS
101: ISQLGPDNMD NLKKLAEQFQ KQASGEGNAA SATIQEEDDD DVPELVGETF ETAAEEKAPA AAASS
Arabidopsis Description
BTF3Basic transcription factor 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SMW7]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.