Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 1
- cytosol 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU1Hr1G039260.2 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G17880.1 | HORVU1Hr1G039260.2 | AT5G35620.1 | 15716105 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G550800.1 | Wheat | cytosol | 82.86 | 98.31 |
| TraesCSU01G127100.1 | Wheat | cytosol | 82.38 | 97.74 |
| Os03t0109600-01 | Rice | plasma membrane | 77.62 | 93.14 |
| EER93008 | Sorghum | cytosol | 72.38 | 91.02 |
| TraesCS4B01G385900.2 | Wheat | plastid | 82.38 | 90.58 |
| Zm00001d027318_P001 | Maize | extracellular, mitochondrion, plastid | 70.95 | 88.17 |
| Zm00001d048526_P001 | Maize | extracellular | 65.71 | 84.66 |
| VIT_17s0053g00620.t01 | Wine grape | cytosol, mitochondrion, nucleus, plastid | 61.9 | 81.25 |
| Solyc07g008720.2.1 | Tomato | nucleus | 61.43 | 79.63 |
| PGSC0003DMT400022830 | Potato | cytosol | 58.1 | 79.22 |
| Solyc09g010330.2.1 | Tomato | nucleus | 60.95 | 79.01 |
| KRH29395 | Soybean | cytosol | 60.95 | 79.01 |
| KRH24412 | Soybean | endoplasmic reticulum | 60.48 | 78.88 |
| KRH29394 | Soybean | cytosol, mitochondrion, nucleus, plastid | 60.48 | 78.4 |
| PGSC0003DMT400073918 | Potato | cytosol | 57.14 | 77.92 |
| KRH75358 | Soybean | endoplasmic reticulum | 58.57 | 77.36 |
| AT1G73230.1 | Thale cress | mitochondrion | 60.48 | 76.97 |
| Bra008086.1-P | Field mustard | mitochondrion | 60.95 | 76.65 |
| Bra016010.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 60.0 | 75.9 |
| CDX96457 | Canola | cytosol, mitochondrion, nucleus, plastid | 60.0 | 75.9 |
| AT1G17880.1 | Thale cress | mitochondrion | 59.05 | 75.15 |
| CDY21729 | Canola | cytosol, mitochondrion, nucleus, plastid | 55.71 | 75.0 |
| Bra031007.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 55.71 | 75.0 |
| CDX68236 | Canola | cytosol, mitochondrion, nucleus, plastid | 58.57 | 74.55 |
| Bra003851.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 58.1 | 74.39 |
| CDX72966 | Canola | cytosol, mitochondrion, nucleus, plastid | 58.1 | 73.49 |
| CDX81852 | Canola | cytosol, mitochondrion, nucleus, plastid | 56.67 | 73.01 |
| CDY26207 | Canola | cytosol, mitochondrion, nucleus, plastid | 57.62 | 72.89 |
| Bra025940.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 57.62 | 72.89 |
| CDX83885 | Canola | mitochondrion | 55.71 | 70.91 |
| CDY19183 | Canola | mitochondrion | 59.05 | 70.06 |
| HORVU2Hr1G035430.1 | Barley | cytosol, nucleus | 20.48 | 66.15 |
| GSMUA_Achr1P02000_001 | Banana | plastid | 64.29 | 62.5 |
| HORVU4Hr1G012300.2 | Barley | cytosol, nucleus, plastid | 26.67 | 59.57 |
| CDY11119 | Canola | mitochondrion | 61.9 | 59.36 |
| CDX82088 | Canola | mitochondrion | 60.48 | 59.07 |
| HORVU5Hr1G040910.1 | Barley | cytosol, nucleus | 23.81 | 58.82 |
| HORVU3Hr1G021640.1 | Barley | cytosol, nucleus | 23.81 | 58.82 |
| HORVU1Hr1G036940.2 | Barley | cytosol | 14.29 | 57.69 |
| HORVU1Hr1G042270.1 | Barley | nucleus, peroxisome, plastid | 73.81 | 57.41 |
| CDY65091 | Canola | mitochondrion | 61.43 | 56.09 |
| HORVU5Hr1G122170.4 | Barley | plastid | 55.71 | 55.71 |
| HORVU0Hr1G024200.2 | Barley | cytosol, mitochondrion | 29.05 | 54.95 |
| Solyc06g050640.1.1 | Tomato | mitochondrion | 16.67 | 50.72 |
| HORVU5Hr1G048580.1 | Barley | cytosol, mitochondrion | 25.71 | 50.0 |
| HORVU7Hr1G026830.2 | Barley | mitochondrion | 33.81 | 46.71 |
| HORVU6Hr1G018230.1 | Barley | plastid | 23.33 | 40.16 |
| Bra016579.1-P | Field mustard | cytosol | 56.67 | 35.31 |
| CDX96745 | Canola | cytosol, golgi, mitochondrion, plastid | 56.19 | 29.72 |
Protein Annotations
| EnsemblPlants:HORVU4Hr1G090110.2 | EnsemblPlantsGene:HORVU4Hr1G090110 | Gene3D:2.20.70.30 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR002715 | InterPro:IPR038187 |
| InterPro:NAC_A/B_dom_sf | InterPro:Nas_poly-pep-assoc_cplx_dom | PANTHER:PTHR10351 | PANTHER:PTHR10351:SF47 | PFAM:PF01849 | PFscan:PS51151 |
| SEG:seg | SMART:SM01407 | UniParc:UPI000B46A9E4 | UniProt:A0A287Q4L8 | MapMan:19.1.2.1.2 | : |
Description
Nascent polypeptide-associated complex subunit beta [Source:UniProtKB/TrEMBL;Acc:A0A287Q4L8]
Coordinates
chrchr4H:+:644446758..644450238
Molecular Weight (calculated)
23309.7 Da
IEP (calculated)
10.572
GRAVY (calculated)
-0.920
Length
210 amino acids
Sequence
(BLAST)
(BLAST)
001: SPSQWLASRV LSSPTNPLPR SPRRRRRRRR RLPEMNVDKL KKMAGAVRTG GKGSVRRKKK AVHKTTTTDD KRLQSTLKRV GVNTIPGIEE VNIFKDDVVI
101: QFQNPKVQAS IAANTWVVSG TPQTKKLQDL LPTIINQLGP DNLDNLRRLA EQFQKQMPGA EGGASIGAAQ DDDDDVPELV PGETFEEAAE EKKAPEAKKE
201: AEPEEKKESS
101: QFQNPKVQAS IAANTWVVSG TPQTKKLQDL LPTIINQLGP DNLDNLRRLA EQFQKQMPGA EGGASIGAAQ DDDDDVPELV PGETFEEAAE EKKAPEAKKE
201: AEPEEKKESS
001: MNREKLMKMA NTVRTGGKGT VRRKKKAVHK TNTTDDKRLQ STLKRIGVNS IPAIEEVNIF KDDVVIQFIN PKVQASIAAN TWVVSGSPQT KKLQDILPQI
101: ISQLGPDNMD NLKKLAEQFQ KQASGEGNAA SATIQEEDDD DVPELVGETF ETAAEEKAPA AAASS
101: ISQLGPDNMD NLKKLAEQFQ KQASGEGNAA SATIQEEDDD DVPELVGETF ETAAEEKAPA AAASS
Arabidopsis Description
BTF3Basic transcription factor 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SMW7]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.