Factsheet for Solyc06g050640.1.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
nucleus 2
mitochondrion 3
plasma membrane 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc09g090580.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G17880.1	Solyc09g090580.2.1	AT5G35620.1	15716105

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400073918	Potato	cytosol	56.52	25.32
KRH75358	Soybean	endoplasmic reticulum	56.52	24.53
AT1G73230.1	Thale cress	mitochondrion	57.97	24.24
Solyc09g010330.2.1	Tomato	nucleus	56.52	24.07
Solyc07g008720.2.1	Tomato	nucleus	56.52	24.07
KRH24412	Soybean	endoplasmic reticulum	55.07	23.6
KRH29395	Soybean	cytosol	55.07	23.46
KRH29394	Soybean	cytosol, mitochondrion, nucleus, plastid	55.07	23.46
VIT_17s0053g00620.t01	Wine grape	cytosol, mitochondrion, nucleus, plastid	53.62	23.12
Bra016010.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	55.07	22.89
CDX72966	Canola	cytosol, mitochondrion, nucleus, plastid	55.07	22.89
CDX96457	Canola	cytosol, mitochondrion, nucleus, plastid	55.07	22.89
GSMUA_Achr6P08310_001	Banana	cytosol	52.17	22.78
Bra008086.1-P	Field mustard	mitochondrion	55.07	22.75
GSMUA_Achr3P18580_001	Banana	cytosol	50.72	22.15
AT1G17880.1	Thale cress	mitochondrion	52.17	21.82
Bra003851.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	50.72	21.34
CDX68236	Canola	cytosol, mitochondrion, nucleus, plastid	50.72	21.21
TraesCS1D01G156700.1	Wheat	cytosol	49.28	20.36
Zm00001d032668_P001	Maize	plastid	47.83	20.0
Zm00001d013999_P001	Maize	plastid	47.83	20.0
EER91468	Sorghum	cytosol	47.83	19.88
CDY21729	Canola	cytosol, mitochondrion, nucleus, plastid	44.93	19.87
Bra031007.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	44.93	19.87
TraesCSU01G127100.1	Wheat	cytosol	50.72	19.77
TraesCS5A01G550800.1	Wheat	cytosol	50.72	19.77
CDX81852	Canola	cytosol, mitochondrion, nucleus, plastid	46.38	19.63
Zm00001d048526_P001	Maize	extracellular	46.38	19.63
Zm00001d027318_P001	Maize	extracellular, mitochondrion, plastid	47.83	19.53
Os03t0109600-01	Rice	plasma membrane	49.28	19.43
TraesCS1A01G159300.1	Wheat	cytosol, nucleus, plastid	49.28	19.43
TraesCS1B01G175700.1	Wheat	mitochondrion	49.28	19.43
EER93008	Sorghum	cytosol	46.38	19.16
Bra025940.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	44.93	18.67
CDY26207	Canola	cytosol, mitochondrion, nucleus, plastid	44.93	18.67
CDX83885	Canola	mitochondrion	43.48	18.18
CDY19183	Canola	mitochondrion	46.38	18.08
TraesCS4B01G385900.2	Wheat	plastid	49.28	17.8
GSMUA_Achr6P16240_001	Banana	golgi, vacuole	47.83	17.65
GSMUA_AchrUn_...	Banana	plastid	49.28	17.62
CDX82088	Canola	mitochondrion	53.62	17.21
HORVU4Hr1G090110.2	Barley	plastid	50.72	16.67
GSMUA_Achr10P...	Banana	plastid	49.28	16.59
CDY65091	Canola	mitochondrion	55.07	16.52
CDY11119	Canola	mitochondrion	52.17	16.44
HORVU1Hr1G042270.1	Barley	nucleus, peroxisome, plastid	49.28	12.59
Bra016579.1-P	Field mustard	cytosol	44.93	9.2
CDX96745	Canola	cytosol, golgi, mitochondrion, plastid	44.93	7.81

Protein Annotations

EnsemblPlants:Solyc06g050640.1.1	EnsemblPlantsGene:Solyc06g050640.1	Gene3D:2.20.70.30	InterPro:IPR038187	InterPro:NAC_A/B_dom_sf	ncoils:Coil
PANTHER:PTHR10351	PANTHER:PTHR10351:SF47	UniParc:UPI0002766B28	UniProt:K4C5K8	MapMan:19.1.2.1.2	:

Description

No Description!

Coordinates

chr6:+:33378225..33378434

Molecular Weight (calculated)

8089.0 Da

IEP (calculated)

10.627

GRAVY (calculated)

-0.204

Length

69 amino acids

Sequence
(BLAST)

1: MLLSNLLTPK FKHQIAPNTW VVSGTSQIKK FQDILPQIIY QLGSDKLENL KKLVEQFQKQ FFRSDLVVR

Best Arabidopsis Sequence Match ( AT1G73230.1 )
(BLAST)

001: MNREKLMKMA NTVRTGGKGT VRRKKKAVHK TTTTDDKRLQ STLKRVGVNS IPAIEEVNIF KDDVVIQFIN PKVQASIAAN TWVVSGTPQT KKLQDILPQI
101: ISQLGPDNLD NLKKLAEQFQ KQAPGAGDVP ATIQEEDDDD DVPDLVVGET FETPATEEAP KAAAS

Arabidopsis Description

Nascent polypeptide-associated complex subunit beta [Source:UniProtKB/Swiss-Prot;Acc:Q9CAT7]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.