CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX68236	Canola	cytosol, mitochondrion, nucleus, plastid	69.3	90.3
Bra008086.1-P	Field mustard	mitochondrion	69.77	89.82
AT1G73230.1	Thale cress	mitochondrion	66.05	86.06
CDX96457	Canola	cytosol, mitochondrion, nucleus, plastid	63.26	81.93
CDX72966	Canola	cytosol, mitochondrion, nucleus, plastid	62.79	81.33
Solyc09g010330.2.1	Tomato	nucleus	60.47	80.25
PGSC0003DMT400073918	Potato	cytosol	57.21	79.87
Solyc07g008720.2.1	Tomato	nucleus	60.0	79.63
KRH24412	Soybean	endoplasmic reticulum	59.53	79.5
PGSC0003DMT400022830	Potato	cytosol	56.74	79.22
CDX81852	Canola	cytosol, mitochondrion, nucleus, plastid	60.0	79.14
KRH29395	Soybean	cytosol	59.53	79.01
KRH29394	Soybean	cytosol, mitochondrion, nucleus, plastid	59.53	79.01
CDY26207	Canola	cytosol, mitochondrion, nucleus, plastid	60.0	77.71
CDX83885	Canola	mitochondrion	59.53	77.58
CDY21729	Canola	cytosol, mitochondrion, nucleus, plastid	56.28	77.56
VIT_17s0053g00620.t01	Wine grape	cytosol, mitochondrion, nucleus, plastid	57.21	76.88
Zm00001d013999_P001	Maize	plastid	58.6	76.36
KRH75358	Soybean	endoplasmic reticulum	56.28	76.1
GSMUA_Achr6P08310_001	Banana	cytosol	55.81	75.95
Zm00001d032668_P001	Maize	plastid	58.14	75.76
CDY65091	Canola	mitochondrion	80.47	75.22
TraesCS1D01G156700.1	Wheat	cytosol	58.14	74.85
EER91468	Sorghum	cytosol	57.21	74.1
TraesCS1B01G175700.1	Wheat	mitochondrion	59.07	72.57
Zm00001d048526_P001	Maize	extracellular	54.88	72.39
CDY19183	Canola	mitochondrion	59.53	72.32
GSMUA_Achr3P18580_001	Banana	cytosol	53.02	72.15
TraesCS1A01G159300.1	Wheat	cytosol, nucleus, plastid	58.6	72.0
EER93008	Sorghum	cytosol	55.81	71.86
TraesCS5A01G550800.1	Wheat	cytosol	58.6	71.19
TraesCSU01G127100.1	Wheat	cytosol	58.6	71.19
Zm00001d027318_P001	Maize	extracellular, mitochondrion, plastid	55.35	70.41
Os03t0109600-01	Rice	plasma membrane	57.21	70.29
CDY11119	Canola	mitochondrion	67.91	66.67
TraesCS4B01G385900.2	Wheat	plastid	59.07	66.49
GSMUA_AchrUn_...	Banana	plastid	58.6	65.28
GSMUA_Achr6P16240_001	Banana	golgi, vacuole	55.81	64.17
GSMUA_Achr10P...	Banana	plastid	58.6	61.46
HORVU4Hr1G090110.2	Barley	plastid	59.07	60.48
Solyc06g050640.1.1	Tomato	mitochondrion	17.21	53.62
HORVU1Hr1G042270.1	Barley	nucleus, peroxisome, plastid	60.47	48.15
CDX96745	Canola	cytosol, golgi, mitochondrion, plastid	60.93	33.0

Protein Annotations

EnsemblPlants:CDX82088	EnsemblPlantsGene:GSBRNA2T00137120001	Gene3D:2.20.70.30	GO:A0A078D4A4	InterPro:IPR002715	InterPro:IPR038187
InterPro:NAC_A/B_dom_sf	InterPro:Nas_poly-pep-assoc_cplx_dom	PANTHER:PTHR10351	PANTHER:PTHR10351:SF47	PFAM:PF01849	PFscan:PS51151
ProteinID:CDX82088	ProteinID:CDX82088.1	SEG:seg	SMART:SM01407	UniParc:UPI0004EEA457	MapMan:19.1.2.1.2

Description

BnaC02g22020D

Coordinates

chrLK031827:+:576138..577959

Molecular Weight (calculated)

24058.8 Da

IEP (calculated)

10.248

GRAVY (calculated)

-0.714

Length

215 amino acids

Sequence
(BLAST)

001: MIKLYPLYRR NRPRNRKTLH RRLDLSVYLL SSSSYTLWSK EEPYKSNNKM NMEKLMKMAN TVRTGGKGTV RRKKKAVHKT NTTDDKKLQS TLKRVGVNSI
101: PGIEEVNIFK DDVVIQFINP KVQASSAANT WAVSGTPQTK KLQDILPQII SQLGPDNLHN LKKLAEQFQK QAPGGADVPA TIQEEDDDDV PELVVGETFE
201: TPAAEEASQP KAAAS

Best Arabidopsis Sequence Match ( AT1G73230.1 )
(BLAST)

001: MNREKLMKMA NTVRTGGKGT VRRKKKAVHK TTTTDDKRLQ STLKRVGVNS IPAIEEVNIF KDDVVIQFIN PKVQASIAAN TWVVSGTPQT KKLQDILPQI
101: ISQLGPDNLD NLKKLAEQFQ KQAPGAGDVP ATIQEEDDDD DVPDLVVGET FETPATEEAP KAAAS

Arabidopsis Description

Nascent polypeptide-associated complex subunit beta [Source:UniProtKB/Swiss-Prot;Acc:Q9CAT7]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.