CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus, cytosol

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX74645
CDX84118
CDY06456
CDY33686
CDY38545
CDY49364

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G17880.1	CDX74645	AT5G35620.1	15716105
AT1G17880.1	CDX84118	AT5G35620.1	15716105
AT1G17880.1	CDY06456	AT5G35620.1	15716105
AT1G17880.1	CDY33686	AT5G35620.1	15716105
AT1G17880.1	CDY38545	AT5G35620.1	15716105
AT1G17880.1	CDY49364	AT5G35620.1	15716105

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra025940.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	100.0	100.0
CDY21729	Canola	cytosol, mitochondrion, nucleus, plastid	84.34	89.74
CDX81852	Canola	cytosol, mitochondrion, nucleus, plastid	86.14	87.73
CDY19183	Canola	mitochondrion	93.37	87.57
AT1G17880.1	Thale cress	mitochondrion	86.14	86.67
CDX83885	Canola	mitochondrion	81.93	82.42
CDX96457	Canola	cytosol, mitochondrion, nucleus, plastid	81.33	81.33
KRH24412	Soybean	endoplasmic reticulum	77.71	80.12
CDX72966	Canola	cytosol, mitochondrion, nucleus, plastid	80.12	80.12
KRH29395	Soybean	cytosol	77.71	79.63
KRH29394	Soybean	cytosol, mitochondrion, nucleus, plastid	77.71	79.63
VIT_17s0053g00620.t01	Wine grape	cytosol, mitochondrion, nucleus, plastid	76.51	79.38
PGSC0003DMT400022830	Potato	cytosol	72.89	78.57
GSMUA_Achr6P08310_001	Banana	cytosol	74.7	78.48
PGSC0003DMT400073918	Potato	cytosol	72.29	77.92
Solyc07g008720.2.1	Tomato	nucleus	75.9	77.78
CDX68236	Canola	cytosol, mitochondrion, nucleus, plastid	77.11	77.58
KRH75358	Soybean	endoplasmic reticulum	74.1	77.36
Solyc09g010330.2.1	Tomato	nucleus	74.7	76.54
GSMUA_Achr3P18580_001	Banana	cytosol	71.69	75.32
Zm00001d013999_P001	Maize	plastid	74.7	75.15
Zm00001d032668_P001	Maize	plastid	74.1	74.55
EER91468	Sorghum	cytosol	73.49	73.49
TraesCS1D01G156700.1	Wheat	cytosol	72.29	71.86
Zm00001d048526_P001	Maize	extracellular	69.28	70.55
TraesCS1B01G175700.1	Wheat	mitochondrion	73.49	69.71
TraesCS1A01G159300.1	Wheat	cytosol, nucleus, plastid	73.49	69.71
EER93008	Sorghum	cytosol	69.88	69.46
Os03t0109600-01	Rice	plasma membrane	72.29	68.57
TraesCS5A01G550800.1	Wheat	cytosol	72.89	68.36
TraesCSU01G127100.1	Wheat	cytosol	72.89	68.36
Zm00001d027318_P001	Maize	extracellular, mitochondrion, plastid	69.28	68.05
GSMUA_Achr6P16240_001	Banana	golgi, vacuole	74.7	66.31
TraesCS4B01G385900.2	Wheat	plastid	73.49	63.87
GSMUA_AchrUn_...	Banana	plastid	74.1	63.73
CDX82088	Canola	mitochondrion	77.71	60.0
CDY11119	Canola	mitochondrion	78.92	59.82
GSMUA_Achr10P...	Banana	plastid	72.29	58.54
CDY65091	Canola	mitochondrion	80.72	58.26
HORVU4Hr1G090110.2	Barley	plastid	72.89	57.62
HORVU1Hr1G042270.1	Barley	nucleus, peroxisome, plastid	74.7	45.93
Solyc06g050640.1.1	Tomato	mitochondrion	18.67	44.93
CDX96745	Canola	cytosol, golgi, mitochondrion, plastid	82.53	34.51

Protein Annotations

MapMan:19.1.2.1.2	Gene3D:2.20.70.30	GO:A0A078GLZ4	UniProt:A0A078GLZ4	EnsemblPlants:CDY26207	ProteinID:CDY26207
ProteinID:CDY26207.1	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00034873001	InterPro:IPR002715	InterPro:IPR038187	InterPro:NAC_A/B_dom_sf
InterPro:Nas_poly-pep-assoc_cplx_dom	PFAM:PF01849	PFscan:PS51151	PANTHER:PTHR10351	PANTHER:PTHR10351:SF47	SMART:SM01407
UniParc:UPI0001B63901	SEG:seg	:	:	:	:

Description

BnaA06g12100DNascent polypeptide-associated complex subunit beta [Source:UniProtKB/TrEMBL;Acc:A0A078GLZ4]

Coordinates

chrLK032186:+:292853..294311

Molecular Weight (calculated)

18007.4 Da

IEP (calculated)

7.542

GRAVY (calculated)

-0.603

Length

166 amino acids

Sequence
(BLAST)

001: MNREKLMKMA NTVRTGGKGT VRRKKKAVHK TNTTDDKKLQ STLKRIGVNS IPAIEEVNIF KDDVVIQFTN PKVQASIAAN TWVVSGSPQT KKLEDILPQI
101: LSQLGPDNMD NLRKLAEQLK KQPPGEGNAS ATIQEEDDDD VPELVAGETF EAAAAEEKVA APAASS

Best Arabidopsis Sequence Match ( AT1G17880.1 )
(BLAST)

001: MNREKLMKMA NTVRTGGKGT VRRKKKAVHK TNTTDDKRLQ STLKRIGVNS IPAIEEVNIF KDDVVIQFIN PKVQASIAAN TWVVSGSPQT KKLQDILPQI
101: ISQLGPDNMD NLKKLAEQFQ KQASGEGNAA SATIQEEDDD DVPELVGETF ETAAEEKAPA AAASS

Arabidopsis Description

BTF3Basic transcription factor 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SMW7]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.