Factsheet for GSMUA_AchrUn_randomP13650_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr4P25000_001
GSMUA_Achr5P12940_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G17880.1	GSMUA_Achr4P25000_001	AT5G35620.1	15716105
AT1G17880.1	GSMUA_Achr5P12940_001	AT5G35620.1	15716105

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P08310_001	Banana	cytosol	75.65	92.41
GSMUA_Achr3P18580_001	Banana	cytosol	73.06	89.24
Solyc07g008720.2.1	Tomato	nucleus	70.98	84.57
VIT_17s0053g00620.t01	Wine grape	cytosol, mitochondrion, nucleus, plastid	69.43	83.75
PGSC0003DMT400073918	Potato	cytosol	65.8	82.47
PGSC0003DMT400022830	Potato	cytosol	65.28	81.82
KRH75358	Soybean	endoplasmic reticulum	67.36	81.76
Solyc09g010330.2.1	Tomato	nucleus	68.39	81.48
KRH29394	Soybean	cytosol, mitochondrion, nucleus, plastid	68.39	81.48
KRH29395	Soybean	cytosol	67.88	80.86
KRH24412	Soybean	endoplasmic reticulum	67.36	80.75
GSMUA_Achr6P16240_001	Banana	golgi, vacuole	77.72	80.21
GSMUA_Achr10P...	Banana	plastid	82.38	77.56
AT1G73230.1	Thale cress	mitochondrion	65.28	76.36
AT1G17880.1	Thale cress	mitochondrion	64.77	75.76
Bra025940.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	63.73	74.1
CDY26207	Canola	cytosol, mitochondrion, nucleus, plastid	63.73	74.1
CDY21729	Canola	cytosol, mitochondrion, nucleus, plastid	59.59	73.72
Bra031007.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	59.59	73.72
CDX81852	Canola	cytosol, mitochondrion, nucleus, plastid	62.18	73.62
CDX96457	Canola	cytosol, mitochondrion, nucleus, plastid	62.69	72.89
Bra016010.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	62.69	72.89
Bra008086.1-P	Field mustard	mitochondrion	62.69	72.46
Bra003851.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	61.14	71.95
CDX72966	Canola	cytosol, mitochondrion, nucleus, plastid	61.66	71.69
CDX83885	Canola	mitochondrion	61.14	71.52
CDX68236	Canola	cytosol, mitochondrion, nucleus, plastid	61.14	71.52
CDY19183	Canola	mitochondrion	63.73	69.49
GSMUA_Achr1P02000_001	Banana	plastid	72.02	64.35
CDX82088	Canola	mitochondrion	65.28	58.6
CDY11119	Canola	mitochondrion	63.73	56.16
CDY65091	Canola	mitochondrion	65.8	55.22
Solyc06g050640.1.1	Tomato	mitochondrion	17.62	49.28
Bra016579.1-P	Field mustard	cytosol	63.73	36.5
CDX96745	Canola	cytosol, golgi, mitochondrion, plastid	63.21	30.73

Protein Annotations

MapMan:19.1.2.1.2	Gene3D:2.20.70.30	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSMUA_AchrUn_randomG13650_001	EnsemblPlants:GSMUA_AchrUn_randomP13650_001	EnsemblPlants:GSMUA_AchrUn_randomT13650_001
InterPro:IPR002715	InterPro:IPR038187	UniProt:M0U8X4	InterPro:NAC_A/B_dom_sf	InterPro:Nas_poly-pep-assoc_cplx_dom	PFAM:PF01849
PFscan:PS51151	PANTHER:PTHR10351	PANTHER:PTHR10351:SF47	SMART:SM01407	UniParc:UPI00029546A9	SEG:seg

Description

Transcription factor BTF3 [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG13650_001]

Coordinates

chrchrUn_random:-:64826579..64830144

Molecular Weight (calculated)

20750.8 Da

IEP (calculated)

9.841

GRAVY (calculated)

-0.413

Length

193 amino acids

Sequence
(BLAST)

001: MSSPPYPIFS RSEVALSAHS SFFSSSGVGS RLTVAKMNVE KLMKMAGAVR TGGKGSMRRK KKAVHKTTTT DDKRLQSTLK RIGVNAIPAI EEVNIFKDDL
101: VIQFVNPKVQ ASIAANTWVV SGSPQTKKLQ DLLPGIINQL GPDNLENLKR LAEHLQKQAP GAGAPAKQDD DDDVPELVPG ETFEAAADEN QAS

Best Arabidopsis Sequence Match ( AT1G17880.1 )
(BLAST)

001: MNREKLMKMA NTVRTGGKGT VRRKKKAVHK TNTTDDKRLQ STLKRIGVNS IPAIEEVNIF KDDVVIQFIN PKVQASIAAN TWVVSGSPQT KKLQDILPQI
101: ISQLGPDNMD NLKKLAEQFQ KQASGEGNAA SATIQEEDDD DVPELVGETF ETAAEEKAPA AAASS

Arabidopsis Description

BTF3Basic transcription factor 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SMW7]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.