Factsheet for GSMUA_Achr4P25000_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr3P11780_001
GSMUA_Achr3P18580_001
GSMUA_Achr3P28040_001
GSMUA_Achr4P05970_001
GSMUA_Achr4P05990_001
GSMUA_Achr4P06000_001
GSMUA_Achr4P12750_001
GSMUA_Achr6P08310_001
GSMUA_Achr6P16240_001
GSMUA_Achr9P12470_001
GSMUA_Achr9P22750_001
GSMUA_AchrUn_...
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G35620.1	GSMUA_Achr10P...	AT1G17880.1	15716105
AT5G35620.1	GSMUA_Achr3P18580_001	AT1G17880.1	15716105
AT5G35620.1	GSMUA_Achr6P08310_001	AT1G17880.1	15716105
AT5G35620.1	GSMUA_Achr6P16240_001	AT1G17880.1	15716105
AT5G35620.1	GSMUA_AchrUn_...	AT1G17880.1	15716105
AT5G35620.1	GSMUA_Achr3P11780_001	AT3G45140.1	11117257
AT5G35620.1	GSMUA_Achr9P12470_001	AT3G45140.1	11117257
AT5G35620.1	GSMUA_Achr3P28040_001	AT5G57870.1	21798944
AT5G35620.1	GSMUA_Achr4P05970_001	AT5G57870.1	21798944
AT5G35620.1	GSMUA_Achr4P05990_001	AT5G57870.1	21798944
AT5G35620.1	GSMUA_Achr4P06000_001	AT5G57870.1	21798944
AT5G35620.1	GSMUA_Achr4P12750_001	AT5G57870.1	21798944
AT5G35620.1	GSMUA_Achr9P22750_001	AT5G57870.1	21798944
AT5G35620.1	GSMUA_AchrUn_...	AT5G57870.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P12940_001	Banana	cytosol	82.81	76.08
VIT_05s0049g01770.t01	Wine grape	cytosol	77.08	72.55
Os10t0467600-01	Rice	cytosol, plastid	75.0	69.9
PGSC0003DMT400044186	Potato	cytosol	71.35	68.5
KRG90357	Soybean	endoplasmic reticulum	70.83	68.0
Solyc09g090580.2.1	Tomato	nucleus	70.31	67.5
KRH33614	Soybean	cytosol	71.88	67.32
EER94108	Sorghum	cytosol	72.4	66.19
TraesCS1B01G167100.1	Wheat	cytosol	71.35	65.55
HORVU1Hr1G039260.2	Barley	cytosol	71.35	65.24
TraesCS1D01G146500.1	Wheat	golgi	70.31	64.59
Zm00001d032775_P002	Maize	cytosol, extracellular	70.31	64.29
Bra035531.1-P	Field mustard	cytosol	66.67	64.0
CDY49364	Canola	cytosol	66.67	64.0
TraesCS1A01G149200.1	Wheat	cytosol	70.31	63.38
Bra035393.1-P	Field mustard	cytosol	65.62	63.32
CDY38545	Canola	cytosol	65.1	63.13
Bra039484.1-P	Field mustard	cytosol	65.1	63.13
AT5G35620.1	Thale cress	cytosol	65.1	63.13
CDX84118	Canola	cytosol	65.62	63.0
Zm00001d014065_P001	Maize	cytosol, extracellular	70.83	62.96
CDY33686	Canola	cytosol	65.1	62.81
CDY06456	Canola	cytosol	61.46	60.82
CDX74645	Canola	cytosol	65.1	54.82
GSMUA_Achr3P02580_001	Banana	cytosol	51.56	43.23
GSMUA_Achr4P12820_001	Banana	cytosol	48.96	38.21
GSMUA_Achr4P11110_001	Banana	cytosol	30.73	26.11
GSMUA_Achr3P29580_001	Banana	cytosol	29.69	25.22

Protein Annotations

MapMan:17.4.2.4.1	Gene3D:3.30.760.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003743
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006412
GO:GO:0006413	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0019538	EnsemblPlantsGene:GSMUA_Achr4G25000_001	EnsemblPlants:GSMUA_Achr4P25000_001	EnsemblPlants:GSMUA_Achr4T25000_001	InterPro:IPR023398	UniProt:M0SRW1
PFAM:PF01652	ScanProsite:PS00813	PANTHER:PTHR11960	PANTHER:PTHR11960:SF12	SUPFAM:SSF55418	InterPro:TIF_eIF4e-like
InterPro:TIF_eIF_4E	InterPro:TIF_eIF_4E_CS	UniParc:UPI00029652F4	:	:	:

Description

Eukaryotic translation initiation factor 4E-2 [Source:GMGC_GENE;Acc:GSMUA_Achr4G25000_001]

Coordinates

chr4:-:24636577..24640563

Molecular Weight (calculated)

21935.7 Da

IEP (calculated)

6.514

GRAVY (calculated)

-0.664

Length

192 amino acids

Sequence
(BLAST)

001: MAETAASGGD EGGAPHRLER KWTFWFDNQT KPKQGAAWGT SLRKAYTFDT VEEFWCLHDQ IFRPSKLPAN ADFHCFKAGI EPKWEDPECA NGGKWSVTCN
101: RKSTLDTMWL ETLMALIGEQ FDDAEEICGV VVSVRPRQDK LALWTKAASN EAVQMSIGRK WKEIMDFNDK IVYSFHDDSR REKSSRGGRY SI

Best Arabidopsis Sequence Match ( AT5G35620.3 )
(BLAST)

001: MATDDVNEPL PAAAELPATE AEKQPHKLER KWSFWFDNQS KKGAAWGASL RKAYTFDTVE DFWGLHETIF QTSKLTANAE IHLFKAGVEP KWEDPECANG
101: GKWTWVVTAN RKEALDKGWL ETLMALIGEQ FDEADEICGV VASVRPQSKQ DKLSLWTRTK SNEAVLMGIG KKWKEILDVT DKITFNNHDD SRRSRFTV

Arabidopsis Description

EIF(ISO)4ELSP1 [Source:UniProtKB/TrEMBL;Acc:A0A178UEE3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.