Factsheet for PGSC0003DMT400044186

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400020118
PGSC0003DMT400020464
PGSC0003DMT400022830
PGSC0003DMT400029102
PGSC0003DMT400073918
PGSC0003DMT400081909

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G35620.1	PGSC0003DMT400022830	AT1G17880.1	15716105
AT5G35620.1	PGSC0003DMT400073918	AT1G17880.1	15716105
AT5G35620.1	PGSC0003DMT400020118	AT3G45140.1	11117257
AT5G35620.1	PGSC0003DMT400081909	AT3G45140.1	11117257
AT5G35620.1	PGSC0003DMT400020464	AT5G57870.1	21798944
AT5G35620.1	PGSC0003DMT400029102	AT5G57870.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g090580.2.1	Tomato	nucleus	90.5	90.5
VIT_05s0049g01770.t01	Wine grape	cytosol	78.0	76.47
GSMUA_Achr4P25000_001	Banana	cytosol	68.5	71.35
KRG90357	Soybean	endoplasmic reticulum	71.0	71.0
KRH33614	Soybean	cytosol	72.0	70.24
Os10t0467600-01	Rice	cytosol, plastid	70.5	68.45
Bra035393.1-P	Field mustard	cytosol	66.0	66.33
TraesCS1B01G167100.1	Wheat	cytosol	69.0	66.03
CDY49364	Canola	cytosol	66.0	66.0
GSMUA_Achr5P12940_001	Banana	cytosol	68.5	65.55
Bra035531.1-P	Field mustard	cytosol	65.5	65.5
CDY38545	Canola	cytosol	64.5	65.15
AT5G35620.1	Thale cress	cytosol	64.5	65.15
Bra039484.1-P	Field mustard	cytosol	64.5	65.15
CDY33686	Canola	cytosol	64.5	64.82
EER94108	Sorghum	cytosol	68.0	64.76
CDX84118	Canola	cytosol	64.5	64.5
HORVU1Hr1G039260.2	Barley	cytosol	67.0	63.81
TraesCS1D01G146500.1	Wheat	golgi	66.5	63.64
CDY06456	Canola	cytosol	61.5	63.4
TraesCS1A01G149200.1	Wheat	cytosol	67.0	62.91
Zm00001d014065_P001	Maize	cytosol, extracellular	67.5	62.5
Zm00001d032775_P002	Maize	cytosol, extracellular	65.5	62.38
CDX74645	Canola	cytosol	66.5	58.33
PGSC0003DMT400034911	Potato	cytosol	47.0	40.69
PGSC0003DMT400060836	Potato	cytosol	28.5	25.56

Protein Annotations

MapMan:17.4.2.4.1	Gene3D:3.30.760.10	ProteinID:CBJ34336	ProteinID:CBJ34336.1	ProteinID:CBJ34337	ProteinID:CBJ34337.1
EMBL:FN666437	EMBL:FN666438	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003743
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737
GO:GO:0005829	GO:GO:0006412	GO:GO:0006413	GO:GO:0006950	GO:GO:0008135	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009605	GO:GO:0009607	GO:GO:0009615	GO:GO:0009987
GO:GO:0019538	GO:GO:0050687	InterPro:IPR023398	UniProt:M1BFR5	PFAM:PF01652	EnsemblPlantsGene:PGSC0003DMG401017153
PGSC:PGSC0003DMG401017153	EnsemblPlants:PGSC0003DMT400044186	ScanProsite:PS00813	PANTHER:PTHR11960	PANTHER:PTHR11960:SF12	SUPFAM:SSF55418
InterPro:TIF_eIF4e-like	InterPro:TIF_eIF_4E	InterPro:TIF_eIF_4E_CS	UniParc:UPI0002965F0E	:	:

Description

Translation initiation factor eIF(Iso)4E [Source:PGSC_GENE;Acc:PGSC0003DMG401017153]

Coordinates

chr9:-:56909861..56913443

Molecular Weight (calculated)

22865.8 Da

IEP (calculated)

5.817

GRAVY (calculated)

-0.687

Length

200 amino acids

Sequence
(BLAST)

001: MATEAPVEAT EIPPVAAAES VEKQPHKLER KWTFWFDNQS KPKQGAAWGS SLRKAYTFET VEEFWSLYDQ IFKPSKLTVN ADFHLFKTGI EPKWEDPECA
101: NGGKWTATSS RKANLETMWL ETLMALVGEQ FDESEDICGV VASVRRSQDK LSLWTKTATN EAAQMGIGRK WKEIIDTEKI SYSFHDDSKR ERSAKSRYTV

Best Arabidopsis Sequence Match ( AT5G35620.3 )
(BLAST)

001: MATDDVNEPL PAAAELPATE AEKQPHKLER KWSFWFDNQS KKGAAWGASL RKAYTFDTVE DFWGLHETIF QTSKLTANAE IHLFKAGVEP KWEDPECANG
101: GKWTWVVTAN RKEALDKGWL ETLMALIGEQ FDEADEICGV VASVRPQSKQ DKLSLWTRTK SNEAVLMGIG KKWKEILDVT DKITFNNHDD SRRSRFTV

Arabidopsis Description

EIF(ISO)4ELSP1 [Source:UniProtKB/TrEMBL;Acc:A0A178UEE3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.