Factsheet for Os10t0467600-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plastid: 27992503

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os02t0194700-01
Os02t0611500-01
Os03t0109600-01
Os04t0499300-01
Os06t0520600-01
Os08t0508800-01
Os08t0509100-01
Os12t0559200-01
Os12t0559934-00
Os12t0560200-00

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G35620.1	Os03t0109600-01	AT1G17880.1	15716105
AT5G35620.1	Os02t0194700-01	AT3G45140.1	11117257
AT5G35620.1	Os08t0508800-01	AT3G45140.1	11117257
AT5G35620.1	Os08t0509100-01	AT3G45140.1	11117257
AT5G35620.1	Os12t0559200-01	AT3G45140.1	11117257
AT5G35620.1	Os12t0559934-00	AT3G45140.1	11117257
AT5G35620.1	Os12t0560200-00	AT3G45140.1	11117257
AT5G35620.1	Os02t0611500-01	AT5G57870.1	21798944
AT5G35620.1	Os04t0499300-01	AT5G57870.1	21798944
AT5G35620.1	Os06t0520600-01	AT5G57870.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER94108	Sorghum	cytosol	79.13	77.62
Zm00001d032775_P002	Maize	cytosol, extracellular	76.7	75.24
GSMUA_Achr4P25000_001	Banana	cytosol	69.9	75.0
TraesCS1B01G167100.1	Wheat	cytosol	74.76	73.68
HORVU1Hr1G039260.2	Barley	cytosol	74.27	72.86
Zm00001d014065_P001	Maize	cytosol, extracellular	76.21	72.69
TraesCS1D01G146500.1	Wheat	golgi	73.3	72.25
VIT_05s0049g01770.t01	Wine grape	cytosol	69.9	70.59
PGSC0003DMT400044186	Potato	cytosol	68.45	70.5
TraesCS1A01G149200.1	Wheat	cytosol	72.82	70.42
Solyc09g090580.2.1	Tomato	nucleus	67.48	69.5
GSMUA_Achr5P12940_001	Banana	cytosol	66.5	65.55
KRG90357	Soybean	endoplasmic reticulum	63.11	65.0
KRH33614	Soybean	cytosol	64.56	64.88
AT5G35620.1	Thale cress	cytosol	62.14	64.65
CDY49364	Canola	cytosol	61.65	63.5
CDY06456	Canola	cytosol	59.71	63.4
Bra039484.1-P	Field mustard	cytosol	60.68	63.13
CDY38545	Canola	cytosol	60.68	63.13
Bra035531.1-P	Field mustard	cytosol	61.16	63.0
CDX84118	Canola	cytosol	61.16	63.0
Bra035393.1-P	Field mustard	cytosol	60.19	62.31
CDY33686	Canola	cytosol	59.71	61.81
CDX74645	Canola	cytosol	59.71	53.95
Os01t0970400-01	Rice	cytosol	46.6	42.29
Os03t0262400-01	Rice	cytosol	26.7	24.23

Protein Annotations

MapMan:17.4.2.4.1	Gene3D:3.30.760.10	EntrezGene:4348852	ProteinID:AAK27811.1	ProteinID:AAP54201.1	EMBL:AK242605
ProteinID:BAF26724.1	ProteinID:BAT11224.1	ProteinID:EEE51107.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003743	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0005829	GO:GO:0006412	GO:GO:0006413	GO:GO:0006417	GO:GO:0006950
GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009605	GO:GO:0009607
GO:GO:0009615	GO:GO:0009987	GO:GO:0019538	GO:GO:0050687	InterPro:IPR023398	EnsemblPlantsGene:Os10g0467600
EnsemblPlants:Os10t0467600-01	UniProt:P48600	PFAM:PF01652	ScanProsite:PS00813	PANTHER:PTHR11960	PANTHER:PTHR11960:SF12
SUPFAM:SSF55418	InterPro:TIF_eIF4e-like	InterPro:TIF_eIF_4E	InterPro:TIF_eIF_4E_CS	EMBL:U34598	UniParc:UPI000009C9BE
RefSeq:XP_015615056.1	SEG:seg	:	:	:	:

Description

cap-binding protein p28Similar to cap-binding protein p28. (Os10t0467600-01)

Coordinates

chr10:+:17258200..17261223

Molecular Weight (calculated)

23200.3 Da

IEP (calculated)

6.142

GRAVY (calculated)

-0.524

Length

206 amino acids

Sequence
(BLAST)

001: MAEVEAAPIA AAETPEVAAA EGAAAAKAPH KLHRQWAFWY DIQSKPKPGA AWGTSLRKAY TFDTVEEFWG LYDQIFRPSK VTVNADFHLF KAGVEPKWED
101: PECANGGKWT VPCSRKTTLE NMWLETLMAL IGEQFDESEE ICGVVASVRQ RGDKLALWTR TASNEAVQVN IGKKWKEIVD YNDKMVYSFH DDAKREKPSR
201: GGRYNV

Best Arabidopsis Sequence Match ( AT5G35620.3 )
(BLAST)

001: MATDDVNEPL PAAAELPATE AEKQPHKLER KWSFWFDNQS KKGAAWGASL RKAYTFDTVE DFWGLHETIF QTSKLTANAE IHLFKAGVEP KWEDPECANG
101: GKWTWVVTAN RKEALDKGWL ETLMALIGEQ FDEADEICGV VASVRPQSKQ DKLSLWTRTK SNEAVLMGIG KKWKEILDVT DKITFNNHDD SRRSRFTV

Arabidopsis Description

EIF(ISO)4ELSP1 [Source:UniProtKB/TrEMBL;Acc:A0A178UEE3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.