Factsheet for Os03t0262400-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Os02t0194700-01
Os02t0611500-01
Os04t0499300-01
Os06t0520600-01
Os08t0508800-01
Os08t0509100-01
Os12t0559200-01
Os12t0559934-00
Os12t0560200-00

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G18110.1	Os02t0194700-01	AT3G45140.1	11117257
AT5G18110.1	Os08t0508800-01	AT3G45140.1	11117257
AT5G18110.1	Os08t0509100-01	AT3G45140.1	11117257
AT5G18110.1	Os12t0559200-01	AT3G45140.1	11117257
AT5G18110.1	Os12t0559934-00	AT3G45140.1	11117257
AT5G18110.1	Os12t0560200-00	AT3G45140.1	11117257
AT5G18110.1	Os02t0611500-01	AT5G57870.1	21798944
AT5G18110.1	Os04t0499300-01	AT5G57870.1	21798944
AT5G18110.1	Os06t0520600-01	AT5G57870.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G216800.1	Wheat	cytosol	83.7	81.9
TraesCS4B01G216300.1	Wheat	cytosol	83.26	81.47
HORVU4Hr1G061500.4	Barley	cytosol	83.26	81.47
EER92511	Sorghum	cytosol	81.94	81.22
TraesCS4A01G087900.1	Wheat	cytosol	82.82	81.03
Zm00001d028515_P001	Maize	cytosol	81.06	80.35
GSMUA_Achr4P11110_001	Banana	cytosol	74.45	74.78
VIT_08s0007g07290.t01	Wine grape	cytosol	72.69	73.33
PGSC0003DMT400060836	Potato	cytosol	71.81	73.09
Bra006439.1-P	Field mustard	cytosol	70.04	72.94
KRH70165	Soybean	cytosol	74.45	72.84
Solyc10g080660.1.1	Tomato	cytosol, nucleus	71.37	72.65
GSMUA_Achr3P29580_001	Banana	cytosol	72.25	72.57
CDX70795	Canola	cytosol	69.6	72.48
CDX78777	Canola	cytosol	69.16	72.02
KRH08499	Soybean	cytosol	74.45	71.91
CDY38487	Canola	cytosol	66.52	70.56
AT5G18110.1	Thale cress	cytosol	68.28	70.14
CDY49143	Canola	cytosol	66.08	66.96
CDY53257	Canola	cytosol	66.08	66.96
CDY02645	Canola	cytosol	66.08	66.96
Bra023664.1-P	Field mustard	cytosol	66.08	66.96
CDY45630	Canola	cytosol	65.64	66.52
Bra002134.1-P	Field mustard	cytosol	50.66	60.85
HORVU2Hr1G094490.1	Barley	plastid	39.21	54.27
Os10t0467600-01	Rice	cytosol, plastid	24.23	26.7
Os01t0970400-01	Rice	cytosol	25.99	25.99

Protein Annotations

MapMan:17.4.2.6	Gene3D:3.30.760.10	EntrezGene:4332327	ProteinID:ABF95097.1	EMBL:AK059989	ProteinID:BAF11542.1
ProteinID:BAS83369.1	ncoils:Coil	ProteinID:EAZ26341.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003743	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005829	GO:GO:0006412	GO:GO:0006413	GO:GO:0006417	GO:GO:0008135	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	InterPro:IPR023398	EnsemblPlantsGene:Os03g0262400
EnsemblPlants:Os03t0262400-01	PFAM:PF01652	ScanProsite:PS00813	PANTHER:PTHR11960	PANTHER:PTHR11960:SF18	UniProt:Q10NQ9
SUPFAM:SSF55418	InterPro:TIF_eIF4e-like	InterPro:TIF_eIF_4E	InterPro:TIF_eIF_4E_CS	UniParc:UPI0000DB4CF9	RefSeq:XP_015631510.1
SEG:seg	:	:	:	:	:

Description

NCBPSimilar to Eukaryotic translation initiation factor 4E type 3 (eIF4E type 3) (eIF-4E type 3) (mRNA cap-binding protein type 3) (Novel cap-binding protein) (nCBP). (Os03t0262400-01)

Coordinates

chr3:-:8597173..8600595

Molecular Weight (calculated)

26600.1 Da

IEP (calculated)

6.316

GRAVY (calculated)

-0.781

Length

227 amino acids

Sequence
(BLAST)

001: MEPAAEKREA EQEELQQQHD EPAVPSADDD EAEAEENERR NRELKAGFHP LRRRFVLWYT RRTPGARSQS YEDNIKKIVD FSTVESFWVC YCHLTRPVSL
101: PSPTDLHLFK EGIRPLWEDP ANRSGGKWII RFKKTVSGRF WEDLVLVLVG DQLDYSDDVC GVVLSVRFNE DILSVWNRNA SDHQAVMTLR DSIKRHLKLP
201: HSYLMEYKPH DASLRDNSSY RNTWLRG

Best Arabidopsis Sequence Match ( AT5G18110.1 )
(BLAST)

001: MEVLDRRDDE IRDSGNMDSI KSHYVTDSVS EERRSRELKD GDHPLRYKFS IWYTRRTPGV RNQSYEDNIK KMVEFSTVEG FWACYCHLAR SSLLPSPTDL
101: HFFKDGIRPL WEDGANCNGG KWIIRFSKVV SARFWEDLLL ALVGDQLDDA DNICGAVLSV RFNEDIISVW NRNASDHQAV MGLRDSIKRH LKLPHAYVME
201: YKPHDASLRD NSSYRNTWLR G

Arabidopsis Description

NCBPEukaryotic translation initiation factor NCBP [Source:UniProtKB/Swiss-Prot;Acc:Q9FK59]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.