Factsheet for Os02t0194700-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 7
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

plasma membrane: 27800704

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os03t0262400-01
Os10t0467600-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G45140.1	Os03t0262400-01	AT5G18110.1	11117257
AT3G45140.1	Os10t0467600-01	AT5G35620.1	11117257

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G154600.1	Wheat	plastid	74.08	76.14
TraesCS6A01G166000.1	Wheat	golgi	73.65	75.69
HORVU6Hr1G033600.1	Barley	plastid	73.22	75.67
TraesCS6B01G193400.1	Wheat	plastid	73.43	75.47
Zm00001d053675_P001	Maize	plastid	70.52	72.15
Zm00001d015852_P004	Maize	plastid	70.09	71.24
KXG29701	Sorghum	plastid	70.52	71.21
Os12t0559934-00	Rice	cytosol	14.69	69.74
CDY07409	Canola	cytosol	26.67	63.82
VIT_13s0064g01500.t01	Wine grape	cytosol	16.95	62.8
CDY61034	Canola	cytosol	30.13	62.42
CDY72550	Canola	cytosol	21.6	62.31
Solyc01g009680.2.1	Tomato	plastid	29.27	61.17
CDY70843	Canola	cytosol	8.21	60.32
VIT_13s0064g01490.t01	Wine grape	cytosol	25.7	59.65
PGSC0003DMT400020118	Potato	cytosol	44.17	59.02
VIT_06s0004g01500.t01	Wine grape	cytosol	49.24	57.65
CDY61881	Canola	cytosol	21.92	57.18
VIT_06s0004g01480.t01	Wine grape	cytosol	48.81	57.0
VIT_13s0064g01480.t01	Wine grape	plastid	54.86	56.26
KRH24671	Soybean	cytosol, plastid	55.51	56.24
KRH29668	Soybean	nucleus	54.54	55.74
PGSC0003DMT400081909	Potato	plastid	54.1	55.73
VIT_06s0004g01510.t01	Wine grape	plastid	53.56	55.05
KRH29669	Soybean	plastid	53.46	54.94
Solyc01g006540.2.1	Tomato	plastid	52.92	54.69
Os12t0560200-00	Rice	cytosol	5.83	54.55
VIT_06s0004g01460.t01	Wine grape	plastid	34.99	54.18
Solyc01g006560.2.1	Tomato	plastid	52.7	54.1
VIT_06s0004g01470.t01	Wine grape	cytosol	51.51	52.82
Solyc12g011040.1.1	Tomato	nucleus, plastid	50.54	52.47
KRG89883	Soybean	cytosol, plastid	48.49	52.27
KRG89889	Soybean	cytosol, plastid	48.49	52.21
CDX91565	Canola	plastid	50.0	51.44
CDY61036	Canola	plastid	49.24	51.29
Bra004060.1-P	Field mustard	plastid	49.78	51.28
CDY04196	Canola	plastid	49.03	51.07
Bra004057.1-P	Field mustard	cytosol	49.03	50.95
CDX67920	Canola	plastid	49.68	50.88
Bra003526.1-P	Field mustard	plastid	49.57	50.77
Os08t0508800-01	Rice	nucleus, plasma membrane	50.65	50.76
CDX79416	Canola	plastid	49.46	50.66
KRH17965	Soybean	plastid	50.11	50.54
KRG89888	Soybean	nucleus	49.24	50.5
Bra004059.1-P	Field mustard	plastid	47.19	50.46
AT3G45140.1	Thale cress	plastid	48.7	50.33
KRH18682	Soybean	cytosol, mitochondrion	49.35	50.16
VIT_06s0004g01450.t01	Wine grape	cytosol, extracellular	46.44	50.06
CDY16339	Canola	plastid	40.93	49.8
Bra022535.1-P	Field mustard	plastid	43.3	49.45
Os08t0509100-01	Rice	nucleus	50.0	49.2
Os12t0559200-01	Rice	plastid	48.49	48.7
Os04t0447100-01	Rice	cytosol	40.17	46.73
Os03t0700400-00	Rice	cytosol, plasma membrane	6.26	46.03
CDY61880	Canola	plastid	26.78	45.01
Bra004058.1-P	Field mustard	plastid	50.22	43.95
Os03t0179900-01	Rice	plastid	41.79	42.16
CDY07407	Canola	cytosol, plastid	49.78	42.02
CDY70245	Canola	plastid	20.3	41.05
CDY07408	Canola	plastid	20.3	41.05
Os03t0700700-01	Rice	cytosol, plasma membrane, plastid	36.93	39.0
Os03t0738600-01	Rice	plasma membrane, plastid	36.61	38.97
Os11t0575600-01	Rice	mitochondrion	36.5	38.94
Os05t0304600-01	Rice	plastid	35.53	38.84
CDY70606	Canola	plastid	16.52	38.73
Os03t0699700-01	Rice	cytosol, plastid	35.31	37.89
CDY61882	Canola	plastid	15.55	37.21

Protein Annotations

Gene3D:1.20.245.10	MapMan:11.7.1.2	Gene3D:2.60.60.20	Gene3D:3.10.450.60	Gene3D:4.10.372.10	Gene3D:4.10.375.10
EntrezGene:4328603	ProteinID:BAD25240.1	ProteinID:BAF08094.1	ProteinID:BAS77441.1	ProteinID:BAS77442.1	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0006629	GO:GO:0006633	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016491	GO:GO:0016702	GO:GO:0031408
GO:GO:0046872	GO:GO:0051213	GO:GO:0055114	InterPro:IPR001024	InterPro:IPR013819	InterPro:IPR027433
InterPro:LipOase	InterPro:LipOase_C	InterPro:LipOase_CS	InterPro:LipOase_C_sf	InterPro:LipOase_Fe_BS	InterPro:LipOase_plant
InterPro:Lipoxygenase_dom_3	EnsemblPlantsGene:Os02g0194700	EnsemblPlants:Os02t0194700-01	PFAM:PF00305	PFAM:PF01477	InterPro:PLAT/LH2_dom
InterPro:PLAT/LH2_dom_sf	PRINTS:PR00087	PRINTS:PR00468	ScanProsite:PS00081	ScanProsite:PS00711	PFscan:PS50095
PFscan:PS51393	PANTHER:PTHR11771	PANTHER:PTHR11771:SF89	UniProt:Q6H7Q6	SMART:SM00308	SUPFAM:SSF48484
SUPFAM:SSF49723	UniParc:UPI00003B43D8	RefSeq:XP_015626775.1	SEG:seg	:	:

Description

LIPOXYGENASE 1Similar to Lipoxygenase 2.3, chloroplast precursor (EC 1.13.11.12) (LOX2:Hv:3). (Os02t0194700-01);Similar to Lipoxygenase. (Os02t0194700-02)

Coordinates

chr2:-:5276686..5282626

Molecular Weight (calculated)

103591.0 Da

IEP (calculated)

6.005

GRAVY (calculated)

-0.317

Length

926 amino acids

Sequence
(BLAST)

001: MIHPNQPLAL SAAKNASTVV VGSPLLAASP ASSPAAACCS SQLQQRRAAG PGRRGAGRLA APRCSTIEQA AGVSSAVTVD RTLTVTATVT VQPPIGVVYA
101: ARGIDDLTDL IGKTLLLELV SSELDPRTGK EKETVSAFAH RTMKQDTYEA EFAVPATFGP VGAVLVENEH HREMFVKEIC LVTGADDSSA VTFDCNSWVH
201: SKFDNPDRRI FFTVKSYLPA QTPKGIEALR KKELETLRGD GTGERKFFDR VYDYDVYNDL GDPDFKIEHL RPVLGGDEHP YPRRCRTGRP HTEIDPRTEK
301: RRGPVYVPRD EQFSDVKGMT FSATTLRSGL HAMLPALEPL LANQELRFPH FPAIDGLYSV GIPLPAQLAA AGAATATAGG AAASSSTSTN IVGGVIPRLV
401: RMIEDTTDHV LRFDVPEMFE RDRFSWFRDE EFARQVLAGV NPICIQLLTE FPIVSKLDPE VYGPPESALT KELLESQIVE SVTVEEAMAQ RRLFILDYHD
501: VFLPYVHRVR ERPETTLYGS RTVFFLTGAG TLSPLAIELA RPQSPTRPQW RRAFVHGPDA TASWLWKLAK AHVLSHDTGY HQLVSHWLRT HCCVEPYIIA
601: ANRQLSRMHP VHRLLHPHFR YTMEINALAR ESLINADGII EESFWPGRYA MELSSVAYAA TWRFDAEALP EDLVRRGLAV RQEDGELELT IKDYPYANDG
701: LLVWNSIKQW ASDYIDFYYK SDEEVACDEE VRAWWEEVRT KGHADKKDEP WWPAVDTRDG LIGVLTTIMW VTSGHHAAVN FGQYHYGGYF PNRPTVMRKK
801: MPVEENKEEE MKKFMEMPEH VLLDTMPSKM QAITIMATLD ILSSHSPDEE YMGEHAEPAW LAEPRVKAAF ERFAGRMKEI EGIVDERNND PELRNRCGAG
901: IVPYELLKPF STPGVTGRGI PNSISI

Best Arabidopsis Sequence Match ( AT3G45140.1 )
(BLAST)

001: MYCRESLSSL QTLNVAKSLS SLFPKQSALI NPISAGRRNN LPRPNLRRRC KVTASRANIE QEGNTVKEPI QNIKVKGYIT AQEEFLEGIT WSRGLDDIAD
101: IRGRSLLVEL ISAKTDQRIT VEDYAQRVWA EAPDEKYECE FEMPEDFGPV GAIKIQNQYH RQLFLKGVEL KLPGGSITFT CESWVAPKSV DPTKRIFFSD
201: KSYLPSQTPE PLKKYRKEEL ETLQGKNREE VGEFTKFERI YDYDVYNDVG DPDNDPELAR PVIGGLTHPY PRRCKTGRKP CETDPSSEQR YGGEFYVPRD
301: EEFSTAKGTS FTGKAVLAAL PSIFPQIESV LLSPQEPFPH FKAIQNLFEE GIQLPKDAGL LPLLPRIIKA LGEAQDDILQ FDAPVLINRD RFSWLRDDEF
401: ARQTLAGLNP YSIQLVEEWP LISKLDPAVY GDPTSLITWE IVEREVKGNM TVDEALKNKR LFVLDYHDLL LPYVNKVREL NNTTLYASRT LFFLSDDSTL
501: RPVAIELTCP PNINKPQWKQ VFTPGYDATS CWLWNLAKTH AISHDAGYHQ LISHWLRTHA CTEPYIIAAN RQLSAMHPIY RLLHPHFRYT MEINARARQS
601: LVNGGGIIET CFWPGKYALE LSSAVYGKLW RFDQEGLPAD LIKRGLAEED KTAEHGVRLT IPDYPFANDG LILWDAIKEW VTDYVKHYYP DEELITSDEE
701: LQGWWSEVRN IGHGDKKDEP WWPVLKTQDD LIGVVTTIAW VTSGHHAAVN FGQYGYGGYF PNRPTTTRIR MPTEDPTDEA LKEFYESPEK VLLKTYPSQK
801: QATLVMVTLD LLSTHSPDEE YIGEQQEASW ANEPVINAAF ERFKGKLQYL EGVIDERNVN ITLKNRAGAG VVKYELLKPT SEHGVTGMGV PYSISI

Arabidopsis Description

LOX2Lipoxygenase 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P38418]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.