Factsheet for VIT_06s0004g01460.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g009680.2.1	Tomato	plastid	51.0	68.85
Os12t0559934-00	Rice	cytosol	22.24	68.21
VIT_13s0064g01500.t01	Wine grape	cytosol	26.76	64.0
HORVU3Hr1G047210.1	Barley	cytosol	22.91	63.13
VIT_06s0004g01450.t01	Wine grape	cytosol, extracellular	84.78	59.02
VIT_06s0004g01500.t01	Wine grape	cytosol	74.25	56.13
VIT_06s0004g01480.t01	Wine grape	cytosol	73.08	55.11
PGSC0003DMT400020118	Potato	cytosol	60.2	51.95
VIT_00s0265g00170.t01	Wine grape	cytosol	42.14	49.9
TraesCS6B01G014400.1	Wheat	cytosol	49.33	49.08
TraesCS7D01G029400.1	Wheat	cytosol	21.4	48.3
TraesCS7A01G034900.1	Wheat	mitochondrion	23.58	48.12
VIT_06s0004g01470.t01	Wine grape	cytosol	71.74	47.51
VIT_13s0064g01490.t01	Wine grape	cytosol	31.1	46.62
VIT_06s0004g01510.t01	Wine grape	plastid	67.06	44.51
HORVU7Hr1G050680.1	Barley	peroxisome	50.0	43.71
VIT_13s0064g01480.t01	Wine grape	plastid	64.05	42.41
Solyc01g006540.2.1	Tomato	plastid	63.21	42.19
KRG89883	Soybean	cytosol, plastid	60.37	42.03
KRH29669	Soybean	plastid	62.88	41.73
Solyc01g006560.2.1	Tomato	plastid	62.88	41.69
PGSC0003DMT400081909	Potato	plastid	62.37	41.49
Os12t0560200-00	Rice	cytosol	6.86	41.41
Solyc12g011040.1.1	Tomato	nucleus, plastid	61.04	40.92
KRH29668	Soybean	nucleus	61.87	40.84
KRH24671	Soybean	cytosol, plastid	61.87	40.48
KRG89889	Soybean	cytosol, plastid	57.86	40.23
GSMUA_Achr3P11780_001	Banana	plastid	55.85	39.48
OQU80925	Sorghum	cytosol	56.86	39.31
KRH18682	Soybean	cytosol, mitochondrion	59.53	39.08
KRG89888	Soybean	nucleus	58.7	38.87
GSMUA_Achr9P12470_001	Banana	plastid	54.68	38.79
KRH17965	Soybean	plastid	59.03	38.45
Os08t0508800-01	Rice	nucleus, plasma membrane	56.86	36.8
TraesCS4D01G347300.1	Wheat	cytosol	54.35	36.72
Os08t0509100-01	Rice	nucleus	57.19	36.34
TraesCS7D01G244800.1	Wheat	plastid	55.85	35.84
HORVU6Hr1G033600.1	Barley	plastid	53.68	35.83
TraesCS7B01G145200.1	Wheat	plastid	55.52	35.78
TraesCS7A01G246200.1	Wheat	plastid	55.52	35.66
Zm00001d053675_P001	Maize	plastid	53.51	35.36
KXG29701	Sorghum	plastid	54.01	35.22
TraesCS6B01G193400.1	Wheat	plastid	53.01	35.18
Zm00001d031449_P001	Maize	mitochondrion	56.19	35.15
HORVU5Hr1G001180.1	Barley	plastid	54.68	35.12
TraesCS5D01G013400.1	Wheat	plastid	54.35	35.02
TraesCS5A01G007900.1	Wheat	plastid	54.35	35.02
Os02t0194700-01	Rice	plasma membrane	54.18	34.99
TraesCS6D01G154600.1	Wheat	plastid	52.68	34.96
Zm00001d015852_P004	Maize	plastid	53.18	34.91
TraesCS6A01G166000.1	Wheat	golgi	52.51	34.85
TraesCS5B01G006500.1	Wheat	plastid	54.01	34.81
TraesCS5D01G041100.1	Wheat	plastid	54.52	34.5
TraesCS5B01G033000.1	Wheat	plastid	54.52	34.32
HORVU7Hr1G006320.4	Barley	plastid	52.68	33.98
Os12t0559200-01	Rice	plastid	52.34	33.95
TraesCS6D01G010100.1	Wheat	plastid	52.84	33.65
HORVU6Hr1G000510.1	Barley	plastid	51.84	33.26
VIT_01s0010g02750.t01	Wine grape	plastid	50.17	32.61
VIT_14s0128g00780.t01	Wine grape	cytosol	44.65	31.08
VIT_14s0128g00790.t01	Wine grape	cytosol	44.31	30.49
TraesCS5A01G032800.1	Wheat	mitochondrion	42.98	29.92
VIT_05s0020g03170.t01	Wine grape	cytosol	43.65	29.79
VIT_09s0002g01080.t01	Wine grape	cytosol	44.65	28.8
VIT_07s0141g00340.t01	Wine grape	cytosol, plastid	27.09	25.39
VIT_06s0004g01580.t01	Wine grape	cytosol	13.21	23.58
VIT_07s0289g00010.t01	Wine grape	cytosol	15.38	19.29

Protein Annotations

Gene3D:1.20.245.10	MapMan:11.7.1.2	Gene3D:3.10.450.60	ProteinID:CCB43750	ProteinID:CCB43750.1	ncoils:Coil
UniProt:F6GUC9	EMBL:FN594951	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0006629
GO:GO:0006633	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016491
GO:GO:0016702	GO:GO:0031408	GO:GO:0046872	GO:GO:0051213	GO:GO:0055114	InterPro:IPR013819
InterPro:LipOase	InterPro:LipOase_C	InterPro:LipOase_CS	InterPro:LipOase_C_sf	InterPro:LipOase_Fe_BS	InterPro:LipOase_plant
PFAM:PF00305	PRINTS:PR00087	PRINTS:PR00468	ScanProsite:PS00081	ScanProsite:PS00711	PFscan:PS51393
PANTHER:PTHR11771	PANTHER:PTHR11771:SF89	SUPFAM:SSF48484	UniParc:UPI000210894E	ArrayExpress:VIT_06s0004g01460	EnsemblPlantsGene:VIT_06s0004g01460
EnsemblPlants:VIT_06s0004g01460.t01	SEG:seg	:	:	:	:

Description

Lipoxygenase [Source:UniProtKB/TrEMBL;Acc:F6GUC9]

Coordinates

chr6:+:1790969..1798006

Molecular Weight (calculated)

68213.0 Da

IEP (calculated)

6.178

GRAVY (calculated)

-0.379

Length

598 amino acids

Sequence
(BLAST)

001: MFKPQVHRPH FVGTVFLPNK PCIPSSSRPS FSVRPWPQPQ KKYRNNIRVG YFPSNIKAVA VASGTKTSIS VEATAGVTLK SPNLLGGSLL LELVSAELDP
101: QDKFSWLWDE EFSRQTLAGV NPCSIKLVSE WPLKSTLDPD VYGPPESAIT TELVEREIKA FMTIDVALEQ KKLFIIDYHD LFLPYVSKVR QMEGTTLYGS
201: RALFFLTPDG TLKPLAIELT RPPIEGKPQW KQVFTPTSES TGRWLWRFAK VHFLAHDSGY HQLVSHWLRT HCVTEPYIIA TNRQLSVMHP IYRLLHPHFR
301: YTMHINALAR ESLINADGII ETSFSPGKYS VELSSVAYDQ QWRFDKEALP ADLINRGIAV EDPDAPHGLK LLIEDYPFAN DGLVLWDALK QWVADYVNYY
401: YKDANMVQSD PELQAWWTEI QTKGHEDKKD EPWWPNLQTP NDLIGIITTI TWVASGHHSA VNFGQYAFAG YFPNRPSIAR TNMPCEEPTE EGWQRFLDNP
501: NSELLACFPS KLQATRIMAT LDLLSEHSSD EEYLGKDRKL TWDEEPVIKE AFNRFSAKLE ELERTIDDRN KDNSLKNRNG AGVVPYELLK GVPYSISI

Best Arabidopsis Sequence Match ( AT1G17420.1 )
(BLAST)

001: MALAKELMGY PLITERSSLV SSASHFKKRT QSTQFSINPF DRRPRKTKSG VVAAISEDLV KTLRFSTTTG DRKSEEEEKA AVKFKVRAVV TVRNKNKEDL
101: KETLVKHLDA FADKIGRNIV LELISTQLDP KTKLPKKSNA AVLKDWSKKS KTKAERVHYT AEFTVDAAFG SPGAITVMNK HQKEFFLESI TIEGFALGPV
201: HFPCNSWVQS QKDHPDKRIF FTNQPYLPNE TPSGLRVLRE KELKNLRGDG SGVRKLSDRI YDFDVYNDLG NPDKSSELSR PKLGGKEVPY PRRCRTGRQS
301: TVSDKDAESR VEKPLPMYVP RDEQFEESKQ DTFAAGRLKA VLHHLIPSLK ASIVAEDFAD FGEIDRLYKE GLLLKLGFQD DIFKKFPLPK VVVDTLQEST
401: KGLLKYDTPK ILSKDKNAWL RDDEFARQAI AGINPVNIER VKTFPPVSNL DPKIYGPQHS ALTDDHIIGH LDGFSVQQAL EENRLYMLDY HDIFLPFLDR
501: INALDGRKAY ATRTIFFLTR LGTLKPVAIE LSLPPHGPKH RSKRVLTPPV DATSNWMWQL AKAHVSSNDA GVHQLVNHWL RTHACLEPFI LAAHRQLSAM
601: HPIFKLLDPH MRYTLEINAL ARQSLISADG VIEGGFTAGA YGMEMSAAAY KSSWRFDMEG LPADLIRRGM AIPDATQPHG LKLLIEDYPY ANDGLLLWSA
701: IQTWVRTYVE RYYPNPNLIK TDSELQSWYS ESINVGHADL RDADWWPELS TVDDLVSILT TLIWLASAQH AALNFGQYPY GGYVPNRPPL MRRLIPDESD
801: PEYASFISHP EKYYFSSMPS LAQTSKFMAV VDTLSTHSPD EEYIGERQQP SIWTGDAEIV EAFYGFAAEI GRIEKEIEKR NADPDRRNRC GAGVLPYELL
901: VPSSEPGVTC RGVPNSVSI

Arabidopsis Description

LOX3Lipoxygenase 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LNR3]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.