Factsheet for VIT_07s0289g00010.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 4
cytosol 3
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_07s0141g00340.t01	Wine grape	cytosol, plastid	96.65	72.26
Solyc09g055890.2.1	Tomato	cytosol	34.8	44.74
PGSC0003DMT400074324	Potato	cytosol	31.03	42.77
KXG23911	Sorghum	cytosol, plastid	40.04	35.05
VIT_06s0004g01580.t01	Wine grape	cytosol	23.48	33.43
GSMUA_Achr2P05850_001	Banana	cytosol	52.2	30.26
KRH07345	Soybean	cytosol, plastid	53.67	29.73
KRH66214	Soybean	cytosol	53.67	29.56
TraesCS1B01G226400.1	Wheat	cytosol	50.31	28.44
TraesCS1D01G215800.2	Wheat	cytosol	50.31	28.37
TraesCS1A01G212900.1	Wheat	cytosol	50.1	28.32
HORVU1Hr1G054390.4	Barley	cytosol	49.9	28.2
VIT_13s0064g01490.t01	Wine grape	cytosol	23.48	28.07
KXG24148	Sorghum	cytosol	49.69	27.65
Os05t0304600-01	Rice	plastid	48.43	27.27
Zm00001d041204_P001	Maize	cytosol	47.8	26.82
VIT_14s0128g00780.t01	Wine grape	cytosol	45.7	25.38
VIT_14s0128g00790.t01	Wine grape	cytosol	44.65	24.51
VIT_05s0020g03170.t01	Wine grape	cytosol	43.4	23.63
VIT_06s0004g01480.t01	Wine grape	cytosol	35.64	21.44
VIT_06s0004g01500.t01	Wine grape	cytosol	35.43	21.37
VIT_06s0004g01470.t01	Wine grape	cytosol	38.16	20.16
VIT_06s0004g01510.t01	Wine grape	plastid	37.53	19.87
VIT_06s0004g01450.t01	Wine grape	cytosol, extracellular	35.64	19.79
VIT_13s0064g01480.t01	Wine grape	plastid	35.85	18.94
VIT_01s0010g02750.t01	Wine grape	plastid	36.48	18.91
VIT_09s0002g01080.t01	Wine grape	cytosol	34.38	17.69
Solyc09g055900.2.1	Tomato	cytosol	15.72	16.23
PGSC0003DMT400074322	Potato	cytosol	14.47	15.61
VIT_06s0004g01460.t01	Wine grape	plastid	19.29	15.38
VIT_00s0265g00170.t01	Wine grape	cytosol	13.42	12.67
VIT_13s0064g01500.t01	Wine grape	cytosol	0.0	0.0

Protein Annotations

Gene3D:1.20.245.10	Gene3D:2.60.60.20	Gene3D:4.10.372.10	Gene3D:4.10.375.10	MapMan:50.1.12	ProteinID:CCB57287
ProteinID:CCB57287.1	UniProt:F6HRH9	EMBL:FN596018	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005515	GO:GO:0006629	GO:GO:0006633	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016491	GO:GO:0016702	GO:GO:0031408	GO:GO:0046872	GO:GO:0051213
GO:GO:0055114	InterPro:IPR001024	InterPro:IPR013819	InterPro:IPR027433	InterPro:LipOase	InterPro:LipOase_C
InterPro:LipOase_CS	InterPro:LipOase_C_sf	InterPro:LipOase_plant	InterPro:Lipoxygenase_dom_3	PFAM:PF00305	PFAM:PF01477
InterPro:PLAT/LH2_dom	InterPro:PLAT/LH2_dom_sf	PRINTS:PR00087	PRINTS:PR00468	ScanProsite:PS00081	PFscan:PS50095
PFscan:PS51393	PANTHER:PTHR11771	PANTHER:PTHR11771:SF59	SMART:SM00308	SUPFAM:SSF48484	SUPFAM:SSF49723
UniParc:UPI0002109140	ArrayExpress:VIT_07s0289g00010	EnsemblPlantsGene:VIT_07s0289g00010	EnsemblPlants:VIT_07s0289g00010.t01	SEG:seg	:

Description

Lipoxygenase [Source:UniProtKB/TrEMBL;Acc:F6HRH9]

Coordinates

chr7:-:13887191..13893238

Molecular Weight (calculated)

55058.6 Da

IEP (calculated)

7.656

GRAVY (calculated)

-0.584

Length

477 amino acids

Sequence
(BLAST)

001: MAHQTLQQCF NVVPGKITCL QTRKEIITGE VFIVQSHGQS SCWISASVQL YSSTRLDPNT GKGKLSEKAY LKHGKCSEHN GTKITKYKVK FRVEPDFGIP
101: GAFLIKNEHK HKFFLQSATL EVPANQSIQF NCKSWIYPFT KTKTNRLFFS NTVYLPNETP EALDELRKEE LESLRGHGTG ERKEWDRVYE YDYYNDLGNP
201: DKGQEHVRPI LGGSDSYPYP RRGRTGRPRC NQDPLTESRP TKFNLDIYVP PDERFSPKKL SEFIENSVQA IVHFPLPEAQ SIDEQESNSF ESLEEIKDIF
301: SRHKRQGVEG WIAEKLKSLV SDDLFKEIKE ASKKDPIKFP LPKIIEENEL AWKDDEEFAR QMLSGVNPTV IKGLEMLCHV FYRLNTHAVV EPFIIATRRQ
401: LSVMHPVHRL LDPHFKDTMH INALSRSIII NSGGILEKIL FTQEISMELS SAIYRDWRFD EQGLPADLIK RYFSLSN

Best Arabidopsis Sequence Match ( AT1G17420.1 )
(BLAST)

001: MALAKELMGY PLITERSSLV SSASHFKKRT QSTQFSINPF DRRPRKTKSG VVAAISEDLV KTLRFSTTTG DRKSEEEEKA AVKFKVRAVV TVRNKNKEDL
101: KETLVKHLDA FADKIGRNIV LELISTQLDP KTKLPKKSNA AVLKDWSKKS KTKAERVHYT AEFTVDAAFG SPGAITVMNK HQKEFFLESI TIEGFALGPV
201: HFPCNSWVQS QKDHPDKRIF FTNQPYLPNE TPSGLRVLRE KELKNLRGDG SGVRKLSDRI YDFDVYNDLG NPDKSSELSR PKLGGKEVPY PRRCRTGRQS
301: TVSDKDAESR VEKPLPMYVP RDEQFEESKQ DTFAAGRLKA VLHHLIPSLK ASIVAEDFAD FGEIDRLYKE GLLLKLGFQD DIFKKFPLPK VVVDTLQEST
401: KGLLKYDTPK ILSKDKNAWL RDDEFARQAI AGINPVNIER VKTFPPVSNL DPKIYGPQHS ALTDDHIIGH LDGFSVQQAL EENRLYMLDY HDIFLPFLDR
501: INALDGRKAY ATRTIFFLTR LGTLKPVAIE LSLPPHGPKH RSKRVLTPPV DATSNWMWQL AKAHVSSNDA GVHQLVNHWL RTHACLEPFI LAAHRQLSAM
601: HPIFKLLDPH MRYTLEINAL ARQSLISADG VIEGGFTAGA YGMEMSAAAY KSSWRFDMEG LPADLIRRGM AIPDATQPHG LKLLIEDYPY ANDGLLLWSA
701: IQTWVRTYVE RYYPNPNLIK TDSELQSWYS ESINVGHADL RDADWWPELS TVDDLVSILT TLIWLASAQH AALNFGQYPY GGYVPNRPPL MRRLIPDESD
801: PEYASFISHP EKYYFSSMPS LAQTSKFMAV VDTLSTHSPD EEYIGERQQP SIWTGDAEIV EAFYGFAAEI GRIEKEIEKR NADPDRRNRC GAGVLPYELL
901: VPSSEPGVTC RGVPNSVSI

Arabidopsis Description

LOX3Lipoxygenase 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LNR3]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.