Factsheet for Solyc09g055890.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 1
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400074324	Potato	cytosol	80.32	86.13
VIT_07s0289g00010.t01	Wine grape	cytosol	44.74	34.8
VIT_07s0141g00340.t01	Wine grape	cytosol, plastid	44.47	25.86
KXG23911	Sorghum	cytosol, plastid	35.31	24.04
KRH66214	Soybean	cytosol	42.32	18.13
KRH07345	Soybean	cytosol, plastid	41.51	17.89
GSMUA_Achr2P05850_001	Banana	cytosol	38.01	17.13
Zm00001d041204_P001	Maize	cytosol	36.93	16.12
TraesCS1B01G226400.1	Wheat	cytosol	35.85	15.76
HORVU1Hr1G054390.4	Barley	cytosol	35.58	15.64
TraesCS1D01G215800.2	Wheat	cytosol	35.58	15.6
Solyc01g099210.2.1	Tomato	cytosol	36.12	15.53
TraesCS1A01G212900.1	Wheat	cytosol	35.31	15.52
KXG24148	Sorghum	cytosol	35.85	15.52
Solyc01g099190.2.1	Tomato	cytosol, extracellular, nucleus, plastid	35.58	15.38
Solyc01g099180.2.1	Tomato	cytosol	35.31	15.34
Solyc01g099160.2.1	Tomato	cytosol, extracellular, nucleus	35.31	15.2
Solyc08g029000.2.1	Tomato	cytosol, extracellular, nucleus	34.23	14.75
Solyc08g014000.2.1	Tomato	cytosol, nucleus, plastid	33.96	14.65
Os05t0304600-01	Rice	plastid	33.42	14.64
Solyc01g099200.2.1	Tomato	cytosol, plastid	31.81	14.03
Solyc09g075860.2.1	Tomato	cytosol, nucleus	32.61	13.8
Solyc09g075870.1.1	Tomato	cytosol	31.27	13.58
Solyc03g122340.2.1	Tomato	cytosol	29.38	12.0
Solyc01g006560.2.1	Tomato	plastid	28.3	11.64
Solyc01g006540.2.1	Tomato	plastid	27.76	11.5
Solyc05g014790.2.1	Tomato	plastid	27.49	11.2
Solyc12g011040.1.1	Tomato	nucleus, plastid	26.15	10.87
Solyc01g099150.2.1	Tomato	nucleus	24.26	10.44
Solyc09g055900.2.1	Tomato	cytosol	2.43	1.95
PGSC0003DMT400074322	Potato	cytosol	0.54	0.45
Solyc01g099170.2.1	Tomato	cytosol, mitochondrion	0.0	0.0
Solyc01g009680.2.1	Tomato	plastid	0.0	0.0

Protein Annotations

Gene3D:2.60.60.20	Gene3D:4.10.372.10	Gene3D:4.10.375.10	MapMan:50.1.12	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005515	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0016702
GO:GO:0046872	GO:GO:0051213	GO:GO:0055114	InterPro:IPR001024	InterPro:IPR013819	InterPro:IPR027433
UniProt:K4CT84	InterPro:LipOase	InterPro:LipOase_C	InterPro:LipOase_C_sf	InterPro:LipOase_plant	InterPro:Lipoxygenase_dom_3
PFAM:PF00305	PFAM:PF01477	InterPro:PLAT/LH2_dom	InterPro:PLAT/LH2_dom_sf	PRINTS:PR00468	PFscan:PS50095
PFscan:PS51393	PANTHER:PTHR11771	PANTHER:PTHR11771:SF59	SMART:SM00308	SUPFAM:SSF48484	SUPFAM:SSF49723
EnsemblPlantsGene:Solyc09g055890.2	EnsemblPlants:Solyc09g055890.2.1	UniParc:UPI000276B154	:	:	:

Description

No Description!

Coordinates

chr9:+:46063589..46066095

Molecular Weight (calculated)

42586.1 Da

IEP (calculated)

9.132

GRAVY (calculated)

-0.588

Length

371 amino acids

Sequence
(BLAST)

001: MVHTRQRSRM IDCLNNFQGS VKAQLSESTK HAESIKGEII IQHTHAKSGL AKPICIQLYS LNDSCTGKGK LSQGVYLNHG KRIQNKINGI TCIKYELTFE
101: ADRDFGFPGA FVIWNQHKDK FFLQSLSLQV EFKQIVHFEC NSWIYSNHLM QKERIFFSNT CYLPSQTPNG LLQLRKQELD TLRGDGIEGR IREWHRAYGY
201: DFYNDLGDPQ RGEGPILGGS IHYPYPRRGK TGEPHIDSEN VKEMMFNMST CIPPDERFSP QKQSEFAKKV IQATLHFVGS QTNQLKSFNK IKELFSGKKS
301: QGVEEWMVKK LEDHLPKEIL KEIGQGIKDY TAKFPMPQLF AGNELAWKDD KEFGRQMLAG INAAVIQCLQ R

Best Arabidopsis Sequence Match ( AT1G55020.1 )
(BLAST)

001: MFGELRDLLT GGGNETTTKK VKGTVVLMKK NVLDFNDFNA SFLDRLHEFL GNKITLRLVS SDVTDSENGS KGKLGKAAHL EDWITTITSL TAGESAFKVT
101: FDYETDFGYP GAFLIRNSHF SEFLLKSLTL EDVPGHGRVH YICNSWIYPA KHYTTDRVFF SNKTYLPHET PATLLKYREE ELVSLRGTGE GELKEWDRVY
201: DYAYYNDLGV PPKNPRPVLG GTQEYPYPRR GRTGRKPTKE DPQTESRLPI TSSLDIYVPR DERFGHLKMS DFLAYALKAI AQFIQPALEA VFDDTPKEFD
301: SFEDVLKIYE EGIDLPNQAL IDSIVKNIPL EMLKEIFRTD GQKFLKFPVP QVIKEDKTAW RTDEEFAREM LAGLNPVVIQ LLKEFPPKSK LDSESYGNQN
401: STITKSHIEH NLDGLTVEEA LEKERLFILD HHDTLMPYLG RVNTTTTKTY ASRTLLFLKD DGTLKPLVIE LSLPHPNGDK FGAVSEVYTP GEGVYDSLWQ
501: LAKAFVGVND SGNHQLISHW MQTHASIEPF VIATNRQLSV LHPVFKLLEP HFRDTMNINA LARQILINGG GIFEITVFPS KYAMEMSSFI YKNHWTFPDQ
601: ALPAELKKRG MAVEDPEAPH GLRLRIKDYP YAVDGLEVWY AIESWVRDYI FLFYKIEEDI QTDTELQAWW KEVREEGHGD KKSEPWWPKM QTREELVESC
701: TIIIWVASAL HAAVNFGQYP VAGYLPNRPT ISRQYMPKEN TPEFEELEKN PDKVFLKTIT AQLQTLLGIS LIEILSTHSS DEVYLGQRDS KEWAAEKEAL
801: EAFEKFGEKV KEIEKNIDER NDDETLKNRT GLVKMPYTLL FPSSEGGVTG RGIPNSVSI

Arabidopsis Description

LOX1Linoleate 9S-lipoxygenase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q06327]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.