Factsheet for Solyc08g014000.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

cytosol 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plastid: 26371478
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400054145	Potato	cytosol	94.07	94.29
Solyc08g029000.2.1	Tomato	cytosol, extracellular, nucleus	78.37	78.28
Solyc01g099160.2.1	Tomato	cytosol, extracellular, nucleus	76.98	76.8
VIT_14s0128g00780.t01	Wine grape	cytosol	73.95	74.04
Solyc01g099180.2.1	Tomato	cytosol	73.37	73.89
CDY70916	Canola	cytosol	43.14	73.61
VIT_14s0128g00790.t01	Wine grape	cytosol	73.37	72.61
Solyc01g099190.2.1	Tomato	cytosol, extracellular, nucleus, plastid	72.21	72.38
VIT_06s0004g01580.t01	Wine grape	cytosol	27.09	69.55
KRH68548	Soybean	cytosol	68.26	68.41
Bra021322.1-P	Field mustard	cytosol	67.91	68.14
AT1G55020.1	Thale cress	cytosol	67.33	67.4
Solyc09g075860.2.1	Tomato	cytosol, nucleus	68.02	66.7
KRH33939	Soybean	cytosol, endoplasmic reticulum	66.63	66.24
GSMUA_Achr1P22970_001	Banana	cytosol	65.12	66.19
Solyc01g099210.2.1	Tomato	cytosol	66.05	65.82
Solyc01g099200.2.1	Tomato	cytosol, plastid	64.19	65.64
Os03t0700400-00	Rice	cytosol, plasma membrane	9.53	65.08
GSMUA_AchrUn_...	Banana	cytosol	64.65	65.03
GSMUA_AchrUn_...	Banana	cytosol	57.67	63.27
GSMUA_Achr1P24370_001	Banana	cytosol	61.86	62.81
TraesCS6D01G122000.1	Wheat	cytosol	22.21	61.61
Solyc09g075870.1.1	Tomato	cytosol	60.7	61.12
GSMUA_Achr6P25090_001	Banana	cytosol	59.53	61.1
TraesCS4A01G275800.1	Wheat	cytosol	16.98	61.09
GSMUA_Achr6P25110_001	Banana	cytosol	56.28	60.96
TraesCS4A01G359800.1	Wheat	cytosol	37.33	60.45
GSMUA_Achr9P19250_001	Banana	plasma membrane	66.74	60.36
EER93612	Sorghum	cytosol	60.0	59.58
Zm00001d033623_P003	Maize	cytosol	60.0	59.52
TraesCS5A01G378800.2	Wheat	cytosol	53.26	58.87
Os03t0700700-01	Rice	cytosol, plasma membrane, plastid	59.77	58.61
TraesCS4D01G035100.1	Wheat	cytosol	59.42	58.2
TraesCS4A01G275900.1	Wheat	cytosol, unclear	59.42	58.2
EER93611	Sorghum	cytosol	60.0	58.11
Os03t0699700-01	Rice	cytosol, plastid	58.26	58.05
TraesCS4B01G037800.1	Wheat	cytosol	59.19	57.97
HORVU4Hr1G005920.1	Barley	cytosol, plasma membrane	59.07	57.86
Zm00001d013493_P001	Maize	cytosol, extracellular, mitochondrion	59.42	57.61
TraesCS4B01G037900.1	Wheat	cytosol, golgi, nucleus, plastid, unclear	57.67	57.61
HORVU5Hr1G093770.1	Barley	cytosol	57.79	57.59
Os03t0738600-01	Rice	plasma membrane, plastid	58.02	57.36
TraesCS5B01G382400.1	Wheat	cytosol, golgi	56.98	57.24
TraesCS4B01G037700.3	Wheat	cytosol, golgi	57.21	57.14
TraesCS4D01G035200.1	Wheat	cytosol	55.0	57.06
TraesCS5D01G388700.1	Wheat	cytosol, golgi, unclear	57.21	56.94
TraesCS5B01G382600.1	Wheat	cytosol	56.86	56.79
Zm00001d033624_P001	Maize	cytosol	58.49	56.71
TraesCS5A01G378700.1	Wheat	cytosol	56.86	56.6
TraesCS5A01G378900.1	Wheat	cytosol	56.86	56.6
TraesCS5B01G382300.1	Wheat	cytosol, unclear	56.86	56.6
EES04028	Sorghum	cytosol	57.44	56.59
EES04025	Sorghum	cytosol	57.09	56.57
Solyc01g099170.2.1	Tomato	cytosol, mitochondrion	33.49	56.36
HORVU5Hr1G093700.3	Barley	cytosol, plasma membrane	56.51	56.25
GSMUA_Achr6P25080_001	Banana	cytosol	50.35	55.87
KXG37783	Sorghum	cytosol	57.67	55.54
TraesCS6A01G132200.1	Wheat	mitochondrion	56.16	55.33
TraesCS6A01G132500.1	Wheat	mitochondrion	56.16	55.33
TraesCS6B01G160400.1	Wheat	mitochondrion	56.16	55.33
TraesCS3B01G602500.1	Wheat	cytosol	56.63	55.28
TraesCS3B01G605700.1	Wheat	cytosol	56.4	54.8
Zm00001d042541_P002	Maize	cytosol	56.28	54.75
Zm00001d042540_P008	Maize	cytosol	56.74	54.71
TraesCS5A01G379000.1	Wheat	nucleus, unclear	48.84	54.55
TraesCS5D01G388800.1	Wheat	cytosol	56.86	54.52
TraesCS5D01G513100.1	Wheat	cytosol	54.42	53.92
Solyc01g099150.2.1	Tomato	nucleus	53.95	53.83
HORVU5Hr1G117110.1	Barley	cytosol	54.77	53.1
HORVU5Hr1G054200.1	Barley	cytosol, mitochondrion	30.0	52.87
Os11t0575600-01	Rice	mitochondrion	52.44	51.96
TraesCS6B01G395700.1	Wheat	cytosol	47.56	50.37
Solyc09g055900.2.1	Tomato	cytosol	26.86	50.0
Solyc01g009680.2.1	Tomato	plastid	25.58	49.66
CDY43490	Canola	cytosol, plasma membrane	67.79	48.46
TraesCS6D01G121900.1	Wheat	mitochondrion	24.53	47.2
Solyc03g122340.2.1	Tomato	cytosol	45.35	42.95
Solyc01g006560.2.1	Tomato	plastid	43.49	41.46
Solyc01g006540.2.1	Tomato	plastid	42.44	40.74
Solyc12g011040.1.1	Tomato	nucleus, plastid	42.21	40.7
Solyc05g014790.2.1	Tomato	plastid	41.86	39.52
Solyc09g055890.2.1	Tomato	cytosol	14.65	33.96
GSMUA_Achr6P25100_001	Banana	cytosol	48.95	3.51

Protein Annotations

Gene3D:1.20.245.10	Gene3D:2.60.60.20	Gene3D:3.10.450.60	Gene3D:4.10.372.10	Gene3D:4.10.375.10	MapMan:50.1.12
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006629	GO:GO:0006631	GO:GO:0006633	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016491	GO:GO:0016702	GO:GO:0031408
GO:GO:0046872	GO:GO:0051213	GO:GO:0055114	InterPro:IPR001024	InterPro:IPR013819	InterPro:IPR027433
InterPro:LipOase	InterPro:LipOase_C	InterPro:LipOase_CS	InterPro:LipOase_C_sf	InterPro:LipOase_Fe_BS	InterPro:LipOase_plant
InterPro:Lipoxygenase_dom_3	UniProt:P38415	PFAM:PF00305	PFAM:PF01477	InterPro:PLAT/LH2_dom	InterPro:PLAT/LH2_dom_sf
PRINTS:PR00087	PRINTS:PR00468	ScanProsite:PS00081	ScanProsite:PS00711	PFscan:PS50095	PFscan:PS51393
PANTHER:PTHR11771	PANTHER:PTHR11771:SF53	SMART:SM00308	SUPFAM:SSF48484	SUPFAM:SSF49723	EnsemblPlantsGene:Solyc08g014000.2
EnsemblPlants:Solyc08g014000.2.1	EMBL:U09026	UniParc:UPI000012E815	SEG:seg	:	:

Description

LOX1.1Linoleate 9S-lipoxygenase A [Source:UniProtKB/Swiss-Prot;Acc:P38415]

Coordinates

chr8:-:3516113..3522693

Molecular Weight (calculated)

96770.3 Da

IEP (calculated)

5.631

GRAVY (calculated)

-0.321

Length

860 amino acids

Sequence
(BLAST)

001: MLGQLVGGLI GGHHDSKKVK GTVVMMKKNA LDFTDLAGSL TDKIFEALGQ KVSFQLISSV QSDPANGLQG KHSNPAYLEN FLLTLTPLAA GETAFGVTFD
101: WNEEFGVPGA FVIKNMHINE FFLKSLTLED VPNHGKVHFV CNSWVYPSFR YKSDRIFFAN QPYLPSETPE LLRKYRENEL VTLRGDGTGK REAWDRIYDY
201: DVYNDLGNPD QGKENVRTTL GGSADYPYPR RGRTGRPPTR TDPKSESRIP LILSLDIYVP RDERFGHLKM SDFLTYALKS IVQFILPELH ALFDGTPNEF
301: DSFEDVLRLY EGGIKLPQGP LFKALTDAIP LEMIRELLRT DGEGILRFPT PLVIKDSKTA WRTDEEFARE MLAGVNPVII SRLEEFPPKS KLDPELYGNQ
401: NSTITAEHIE GKLDGLTIDE AINSNKLFIL NHHDVLIPYL RRINTTTTKT YASRTLLFLQ DNGSLKPLAI ELSLPHPDGD QFGVTSKVYT PSDQGVEGSI
501: WQLAKAYVAV NDSGVHQLIS HWLNTHAVIE PFVIATNRQL SVLHPIHKLL YPHFRDTMNI NALARQILIN AGGVLESTVF PSKFAMEMSA VVYKDWVFPD
601: QALPADLVKR GVAVEDSSSP HGVRLLIDDY PYAVDGLEIW SAIKSWVTDY CSFYYGSNEE ILKDNELQAW WKEVREVGHG DKKNEPWWAE METPQELIDS
701: CTTIIWIASA LHAAVNFGQY PYAGYLPNRP TVSRKFMPEP GTPEYEELKK NPDKAFLKTI TAQLQTLLGV SLIEILSRHT TDEIYLGQRE SPEWTKDKEP
801: LAAFERFGNK LTDIEKQIMQ RNGNNILTNR TGPVNAPYTL LFPTSEGGLT GKGIPNSVSI

Best Arabidopsis Sequence Match ( AT1G55020.1 )
(BLAST)

001: MFGELRDLLT GGGNETTTKK VKGTVVLMKK NVLDFNDFNA SFLDRLHEFL GNKITLRLVS SDVTDSENGS KGKLGKAAHL EDWITTITSL TAGESAFKVT
101: FDYETDFGYP GAFLIRNSHF SEFLLKSLTL EDVPGHGRVH YICNSWIYPA KHYTTDRVFF SNKTYLPHET PATLLKYREE ELVSLRGTGE GELKEWDRVY
201: DYAYYNDLGV PPKNPRPVLG GTQEYPYPRR GRTGRKPTKE DPQTESRLPI TSSLDIYVPR DERFGHLKMS DFLAYALKAI AQFIQPALEA VFDDTPKEFD
301: SFEDVLKIYE EGIDLPNQAL IDSIVKNIPL EMLKEIFRTD GQKFLKFPVP QVIKEDKTAW RTDEEFAREM LAGLNPVVIQ LLKEFPPKSK LDSESYGNQN
401: STITKSHIEH NLDGLTVEEA LEKERLFILD HHDTLMPYLG RVNTTTTKTY ASRTLLFLKD DGTLKPLVIE LSLPHPNGDK FGAVSEVYTP GEGVYDSLWQ
501: LAKAFVGVND SGNHQLISHW MQTHASIEPF VIATNRQLSV LHPVFKLLEP HFRDTMNINA LARQILINGG GIFEITVFPS KYAMEMSSFI YKNHWTFPDQ
601: ALPAELKKRG MAVEDPEAPH GLRLRIKDYP YAVDGLEVWY AIESWVRDYI FLFYKIEEDI QTDTELQAWW KEVREEGHGD KKSEPWWPKM QTREELVESC
701: TIIIWVASAL HAAVNFGQYP VAGYLPNRPT ISRQYMPKEN TPEFEELEKN PDKVFLKTIT AQLQTLLGIS LIEILSTHSS DEVYLGQRDS KEWAAEKEAL
801: EAFEKFGEKV KEIEKNIDER NDDETLKNRT GLVKMPYTLL FPSSEGGVTG RGIPNSVSI

Arabidopsis Description

LOX1Linoleate 9S-lipoxygenase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q06327]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.