Factsheet for Zm00001d042540_P008

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES04028	Sorghum	cytosol	90.81	92.78
Zm00001d042541_P002	Maize	cytosol	81.05	81.79
Os03t0738600-01	Rice	plasma membrane, plastid	75.0	76.9
TraesCS4A01G359800.1	Wheat	cytosol	45.07	75.71
TraesCS5B01G382300.1	Wheat	cytosol, unclear	72.09	74.42
TraesCS5D01G388700.1	Wheat	cytosol, golgi, unclear	71.97	74.31
TraesCS5A01G378700.1	Wheat	cytosol	71.97	74.31
HORVU5Hr1G093700.3	Barley	cytosol, plasma membrane	71.3	73.61
Zm00001d033623_P003	Maize	cytosol	71.52	73.59
TraesCS5A01G378800.2	Wheat	cytosol	64.01	73.39
TraesCS5B01G382600.1	Wheat	cytosol	70.29	72.82
TraesCS5B01G382400.1	Wheat	cytosol, golgi	69.73	72.66
TraesCS5A01G378900.1	Wheat	cytosol	69.84	72.11
HORVU5Hr1G093770.1	Barley	cytosol	69.28	71.61
TraesCS5D01G388800.1	Wheat	cytosol	70.18	69.79
TraesCS5D01G513100.1	Wheat	cytosol	67.15	69.01
TraesCS5A01G379000.1	Wheat	nucleus, unclear	59.19	68.57
HORVU5Hr1G117110.1	Barley	cytosol	65.58	65.95
CDY70916	Canola	cytosol	35.31	62.5
Zm00001d033624_P001	Maize	cytosol	61.66	62.01
HORVU5Hr1G054200.1	Barley	cytosol, mitochondrion	33.86	61.89
Zm00001d013493_P001	Maize	cytosol, extracellular, mitochondrion	61.44	61.78
GSMUA_Achr1P22970_001	Banana	cytosol	56.84	59.93
KRH35534	Soybean	cytosol	30.04	59.82
PGSC0003DMT400063654	Potato	cytosol	32.51	59.06
KRH16725	Soybean	cytosol	15.25	58.87
KRH62399	Soybean	cytosol, endoplasmic reticulum	15.47	58.47
VIT_14s0128g00780.t01	Wine grape	cytosol	55.72	57.86
KRH62403	Soybean	cytosol, endoplasmic reticulum	14.69	57.71
PGSC0003DMT400028158	Potato	cytosol	55.38	57.31
Bra021322.1-P	Field mustard	cytosol	55.04	57.29
Solyc01g099160.2.1	Tomato	cytosol, extracellular, nucleus	55.27	57.19
Solyc08g029000.2.1	Tomato	cytosol, extracellular, nucleus	55.16	57.14
VIT_14s0128g00790.t01	Wine grape	cytosol	55.61	57.08
KRH57987	Soybean	cytosol	16.48	56.98
Solyc08g014000.2.1	Tomato	cytosol, nucleus, plastid	54.71	56.74
PGSC0003DMT400063446	Potato	cytosol	51.12	56.72
PGSC0003DMT400054145	Potato	cytosol	54.37	56.53
AT1G55020.1	Thale cress	cytosol	54.37	56.46
Solyc09g075860.2.1	Tomato	cytosol, nucleus	55.16	56.1
KRH68548	Soybean	cytosol	53.92	56.06
KRH33939	Soybean	cytosol, endoplasmic reticulum	54.15	55.84
PGSC0003DMT400081370	Potato	cytosol	54.6	55.53
VIT_05s0020g03170.t01	Wine grape	cytosol	54.04	55.02
KRG91271	Soybean	cytosol	52.8	54.9
Solyc01g099200.2.1	Tomato	cytosol, plastid	51.57	54.7
PGSC0003DMT400063469	Potato	cytosol	51.68	54.69
KRH23265	Soybean	endoplasmic reticulum, nucleus	52.91	54.5
PGSC0003DMT400063477	Potato	cytosol	52.24	54.44
Solyc01g099180.2.1	Tomato	cytosol	52.02	54.33
Solyc01g099190.2.1	Tomato	cytosol, extracellular, nucleus, plastid	52.13	54.2
KRH44090	Soybean	endoplasmic reticulum	52.24	54.19
PGSC0003DMT400063452	Potato	cytosol	48.43	54.07
PGSC0003DMT400063461	Potato	cytosol	42.04	54.03
KRH23266	Soybean	cytosol	50.0	54.0
KRH10050	Soybean	endoplasmic reticulum	51.68	53.79
Solyc01g099210.2.1	Tomato	cytosol	52.02	53.77
KRH44093	Soybean	endoplasmic reticulum	50.67	53.43
KRH13357	Soybean	endoplasmic reticulum	14.46	53.31
KRH47522	Soybean	endoplasmic reticulum, nucleus	51.57	53.18
KRH10051	Soybean	endoplasmic reticulum, nucleus	51.01	53.15
KRH23268	Soybean	endoplasmic reticulum	50.67	52.99
KRH44095	Soybean	endoplasmic reticulum	51.23	52.77
KRH10053	Soybean	endoplasmic reticulum	50.45	52.76
KRH47067	Soybean	endoplasmic reticulum	51.01	52.66
Bra039948.1-P	Field mustard	cytosol	52.35	52.65
KRH47066	Soybean	endoplasmic reticulum, nucleus	50.56	52.5
AT3G22400.1	Thale cress	cytosol	52.13	52.48
Solyc09g075870.1.1	Tomato	cytosol	50.22	52.46
CDY38326	Canola	cytosol	52.02	52.31
KRH44097	Soybean	cytosol, endoplasmic reticulum	50.9	52.3
VIT_06s0004g01580.t01	Wine grape	cytosol	19.62	52.24
KRH23269	Soybean	endoplasmic reticulum	48.09	52.19
KRH47525	Soybean	endoplasmic reticulum	50.56	51.96
CDY46325	Canola	cytosol	51.23	51.81
KRH44094	Soybean	endoplasmic reticulum	49.89	51.33
KRH47069	Soybean	endoplasmic reticulum	26.01	50.99
Bra023829.1-P	Field mustard	cytosol	51.57	50.94
CDY64191	Canola	cytosol	51.35	50.5
KRG88464	Soybean	cytosol	25.11	49.12
KRH44092	Soybean	nucleus	45.74	47.61
KRH47064	Soybean	endoplasmic reticulum	29.6	46.32
Zm00001d041204_P001	Maize	cytosol	42.38	44.47
Solyc01g099170.2.1	Tomato	cytosol, mitochondrion	23.99	41.88
CDY43490	Canola	cytosol, plasma membrane	54.93	40.73
Solyc01g099150.2.1	Tomato	nucleus	38.9	40.26
Zm00001d002000_P003	Maize	cytosol, mitochondrion, plastid	40.7	40.15
Zm00001d053675_P001	Maize	plastid	39.69	39.12
Zm00001d015852_P004	Maize	plastid	39.13	38.31
Zm00001d025524_P001	Maize	plastid	39.69	38.11
Zm00001d003533_P001	Maize	plastid	40.02	37.94
Zm00001d027893_P001	Maize	plastid	41.03	37.81
Zm00001d031449_P001	Maize	mitochondrion	39.46	36.82

Protein Annotations

Gene3D:1.20.245.10	EntrezGene:100037802	Gene3D:2.60.60.20	Gene3D:3.10.450.60	Gene3D:4.10.372.10	Gene3D:4.10.375.10
MapMan:50.1.12	UniProt:A0A1D6N522	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515
GO:GO:0006629	GO:GO:0006633	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016491	GO:GO:0016702	GO:GO:0031408	GO:GO:0046872	GO:GO:0051213	GO:GO:0055114
InterPro:IPR001024	InterPro:IPR013819	InterPro:IPR027433	InterPro:LipOase	InterPro:LipOase_C	InterPro:LipOase_CS
InterPro:LipOase_C_sf	InterPro:LipOase_Fe_BS	InterPro:LipOase_plant	InterPro:Lipoxygenase_dom_3	ProteinID:ONM35731.1	PFAM:PF00305
PFAM:PF01477	InterPro:PLAT/LH2_dom	InterPro:PLAT/LH2_dom_sf	PRINTS:PR00087	PRINTS:PR00468	ScanProsite:PS00081
ScanProsite:PS00711	PFscan:PS50095	PFscan:PS51393	PANTHER:PTHR11771	PANTHER:PTHR11771:SF54	SMART:SM00308
SUPFAM:SSF48484	SUPFAM:SSF49723	UniParc:UPI000844196F	EnsemblPlantsGene:Zm00001d042540	EnsemblPlants:Zm00001d042540_P008	EnsemblPlants:Zm00001d042540_T008
SEG:seg	:	:	:	:	:

Description

Linoleate 9S-lipoxygenase 1

Coordinates

chr3:+:171277708..171281309

Molecular Weight (calculated)

100756.0 Da

IEP (calculated)

6.684

GRAVY (calculated)

-0.369

Length

892 amino acids

Sequence
(BLAST)

001: MFGNIGKIPI IGDLTGSNKN AHLKGNLVLM RKTVLGFDVT SIAGSLMDGL GEFLGRGVTC QLVSSTVVDP NNGNRGKVGQ EASLEQWLLH PPPLLAGEDQ
101: FRVTFDWEVE KHGVPGAIIV KNNHASEFFL KTITIDDVPG HGPIVFVANS WVYPQYKYRY NRVFFSNDTY LPSQMPAALK PYRDDELRNL RGDDQQGPYQ
201: EHDRVYRYDV YNDLGNPDAK NPRPVLGGSK HHPYPRRGRT GRKPTQTDPN SESRLTLTDG DVYVPRDERF GHIKNSDFYG YTIKAFVDGL VPILEGYLLG
301: IEFNSFKDIL QLYEGGIKLP DIPALEEFRK QFPLQMVKDL MPAGGDYVLK LPMPKIIKED KKAWMSDEEF ARETLAGVNP LIIRRLTVSV DVQSCLSNWM
401: STLYKQLQEF PPKSTLDPSK YGDQTSTITE AHIAGSLEGL TVQQALDSNR LYILDHHDHY MPFLIEVNSL NDNFIYATRT LLFLRGDGTL APVAIEMSLP
501: ELRDGITAAK STVYTPAPPT AGAEAWVWRL AKAYVNVNDY CWHQGISHWL NTHAVMEPFV IATNRQLSVT HPVHRLLLPH YRDTMNINAL ARQKLINAGG
601: IFEMTVFPRK YAIEISSKVY GSWNFTEQAL PDDLIKRGMA VPDPSSPYKV RLLIEDYPYA SDGLAVWHAI EQWVTEYLAI YYPNDGVLQA DVELQAWWKE
701: AREVGHADLK DEHWWPKMQT VPELVKACTT IIWIASALHA AVNFGQYPYC GYHPNRPSVS RRPMPVPGSD AYKELEKNPE KFFVRSITAQ FQAVVGISLL
801: EILSSHSSDE VYLGQRDTKE WTSDAKAQEA FKRFGARLTE IEKRVEAMNK DPRFKNRYSA AQFPYTLLFP NTSDKGDNTG VTAKGIPNSI SI

Best Arabidopsis Sequence Match ( AT1G17420.1 )
(BLAST)

001: MALAKELMGY PLITERSSLV SSASHFKKRT QSTQFSINPF DRRPRKTKSG VVAAISEDLV KTLRFSTTTG DRKSEEEEKA AVKFKVRAVV TVRNKNKEDL
101: KETLVKHLDA FADKIGRNIV LELISTQLDP KTKLPKKSNA AVLKDWSKKS KTKAERVHYT AEFTVDAAFG SPGAITVMNK HQKEFFLESI TIEGFALGPV
201: HFPCNSWVQS QKDHPDKRIF FTNQPYLPNE TPSGLRVLRE KELKNLRGDG SGVRKLSDRI YDFDVYNDLG NPDKSSELSR PKLGGKEVPY PRRCRTGRQS
301: TVSDKDAESR VEKPLPMYVP RDEQFEESKQ DTFAAGRLKA VLHHLIPSLK ASIVAEDFAD FGEIDRLYKE GLLLKLGFQD DIFKKFPLPK VVVDTLQEST
401: KGLLKYDTPK ILSKDKNAWL RDDEFARQAI AGINPVNIER VKTFPPVSNL DPKIYGPQHS ALTDDHIIGH LDGFSVQQAL EENRLYMLDY HDIFLPFLDR
501: INALDGRKAY ATRTIFFLTR LGTLKPVAIE LSLPPHGPKH RSKRVLTPPV DATSNWMWQL AKAHVSSNDA GVHQLVNHWL RTHACLEPFI LAAHRQLSAM
601: HPIFKLLDPH MRYTLEINAL ARQSLISADG VIEGGFTAGA YGMEMSAAAY KSSWRFDMEG LPADLIRRGM AIPDATQPHG LKLLIEDYPY ANDGLLLWSA
701: IQTWVRTYVE RYYPNPNLIK TDSELQSWYS ESINVGHADL RDADWWPELS TVDDLVSILT TLIWLASAQH AALNFGQYPY GGYVPNRPPL MRRLIPDESD
801: PEYASFISHP EKYYFSSMPS LAQTSKFMAV VDTLSTHSPD EEYIGERQQP SIWTGDAEIV EAFYGFAAEI GRIEKEIEKR NADPDRRNRC GAGVLPYELL
901: VPSSEPGVTC RGVPNSVSI

Arabidopsis Description

LOX3Lipoxygenase 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LNR3]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.