CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

cytosol 6
mitochondrion 4

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH44097	Soybean	cytosol, endoplasmic reticulum	87.76	87.56
KRH47069	Soybean	endoplasmic reticulum	45.5	86.59
KRH10051	Soybean	endoplasmic reticulum, nucleus	74.13	75.0
KRH16725	Soybean	cytosol	19.86	74.46
KRH10050	Soybean	endoplasmic reticulum	73.67	74.45
KRH10053	Soybean	endoplasmic reticulum	72.63	73.74
KRH62399	Soybean	cytosol, endoplasmic reticulum	20.09	73.73
KRH62403	Soybean	cytosol, endoplasmic reticulum	19.17	73.13
KRH23268	Soybean	endoplasmic reticulum	71.94	73.04
KRH23269	Soybean	endoplasmic reticulum	69.28	72.99
KRH57987	Soybean	cytosol	21.36	71.71
KRH44090	Soybean	endoplasmic reticulum	68.48	68.95
KRH47522	Soybean	endoplasmic reticulum, nucleus	68.24	68.32
KRH44094	Soybean	endoplasmic reticulum	68.36	68.28
KRH23265	Soybean	endoplasmic reticulum, nucleus	68.13	68.13
KRH44093	Soybean	endoplasmic reticulum	65.7	67.26
KRH47067	Soybean	endoplasmic reticulum	67.09	67.25
KRH47066	Soybean	endoplasmic reticulum, nucleus	66.28	66.82
KRH23266	Soybean	cytosol	63.51	66.59
KRH47064	Soybean	endoplasmic reticulum	43.76	66.49
KRH47525	Soybean	endoplasmic reticulum	65.82	65.67
KRH35534	Soybean	cytosol	33.37	64.51
KRH13357	Soybean	endoplasmic reticulum	17.55	62.81
KRH68548	Soybean	cytosol	61.2	61.77
KRH33939	Soybean	cytosol, endoplasmic reticulum	59.93	60.0
GSMUA_AchrUn_...	Banana	cytosol	53.23	58.8
GSMUA_Achr1P22970_001	Banana	cytosol	57.27	58.63
TraesCS4A01G275800.1	Wheat	cytosol	16.17	58.58
GSMUA_AchrUn_...	Banana	cytosol	57.27	58.01
TraesCS4A01G359800.1	Wheat	cytosol	35.57	58.0
GSMUA_Achr1P24370_001	Banana	cytosol	56.12	57.38
KRG91271	Soybean	cytosol	56.24	56.76
KRH44092	Soybean	nucleus	55.77	56.36
Zm00001d033623_P003	Maize	cytosol	55.31	55.25
GSMUA_Achr6P25110_001	Banana	cytosol	50.46	55.04
TraesCS5A01G378800.2	Wheat	cytosol	49.31	54.88
TraesCS5B01G382400.1	Wheat	cytosol, golgi	53.81	54.44
Os03t0700700-01	Rice	cytosol, plasma membrane, plastid	55.08	54.39
EER93612	Sorghum	cytosol	54.39	54.39
TraesCS5B01G382600.1	Wheat	cytosol	53.93	54.24
HORVU5Hr1G093770.1	Barley	cytosol	54.04	54.23
EER93611	Sorghum	cytosol	55.43	54.05
HORVU5Hr1G093700.3	Barley	cytosol, plasma membrane	53.93	54.05
Os03t0700400-00	Rice	cytosol, plasma membrane	7.85	53.97
TraesCS6D01G122000.1	Wheat	cytosol	19.28	53.87
Zm00001d013493_P001	Maize	cytosol, extracellular, mitochondrion	55.08	53.78
TraesCS5A01G378700.1	Wheat	cytosol	53.58	53.7
TraesCS5D01G388700.1	Wheat	cytosol, golgi, unclear	53.58	53.7
GSMUA_Achr6P25090_001	Banana	cytosol	51.96	53.7
TraesCS5B01G382300.1	Wheat	cytosol, unclear	53.46	53.59
Os03t0738600-01	Rice	plasma membrane, plastid	53.81	53.56
TraesCS4D01G035200.1	Wheat	cytosol	51.15	53.44
TraesCS4B01G037900.1	Wheat	cytosol, golgi, nucleus, plastid, unclear	53.12	53.43
TraesCS5A01G378900.1	Wheat	cytosol	53.12	53.24
TraesCS4B01G037700.3	Wheat	cytosol, golgi	52.77	53.08
TraesCS4B01G037800.1	Wheat	cytosol	53.81	53.08
EES04025	Sorghum	cytosol	53.12	53.0
Os03t0699700-01	Rice	cytosol, plastid	52.77	52.95
TraesCS4A01G275900.1	Wheat	cytosol, unclear	53.58	52.85
TraesCS4D01G035100.1	Wheat	cytosol	53.58	52.85
Zm00001d033624_P001	Maize	cytosol	54.04	52.76
GSMUA_Achr9P19250_001	Banana	plasma membrane	57.51	52.37
EES04028	Sorghum	cytosol	52.66	52.23
HORVU4Hr1G005920.1	Barley	cytosol, plasma membrane	52.77	52.05
TraesCS5D01G388800.1	Wheat	cytosol	53.81	51.95
Zm00001d042541_P002	Maize	cytosol	52.89	51.81
KXG37783	Sorghum	cytosol	53.35	51.74
TraesCS5A01G379000.1	Wheat	nucleus, unclear	45.84	51.56
Zm00001d042540_P008	Maize	cytosol	52.77	51.23
TraesCS5D01G513100.1	Wheat	cytosol	50.69	50.58
TraesCS3B01G602500.1	Wheat	cytosol	51.27	50.4
TraesCS3B01G605700.1	Wheat	cytosol	51.5	50.4
HORVU5Hr1G117110.1	Barley	cytosol	51.39	50.17
TraesCS6B01G160400.1	Wheat	mitochondrion	50.46	50.06
TraesCS6A01G132200.1	Wheat	mitochondrion	50.35	49.94
TraesCS6A01G132500.1	Wheat	mitochondrion	50.35	49.94
HORVU5Hr1G054200.1	Barley	cytosol, mitochondrion	27.71	49.18
KRG88464	Soybean	cytosol	25.52	48.46
GSMUA_Achr6P25080_001	Banana	cytosol	42.96	48.0
Os11t0575600-01	Rice	mitochondrion	47.81	47.7
TraesCS6B01G395700.1	Wheat	cytosol	44.34	47.29
TraesCS6D01G121900.1	Wheat	mitochondrion	22.4	43.4
KRH07345	Soybean	cytosol, plastid	42.84	43.09
KRH66214	Soybean	cytosol	42.84	42.84
KRH69027	Soybean	plastid	43.53	41.84
KRG89889	Soybean	cytosol, plastid	41.34	41.63
KRH47615	Soybean	nucleus	44.46	41.53
KRG89883	Soybean	cytosol, plastid	41.11	41.44
KRG97300	Soybean	plastid	42.96	41.38
KRH42646	Soybean	plastid	44.0	41.37
KRH06197	Soybean	nucleus	44.0	41.32
KRH10882	Soybean	cytosol	20.55	41.01
KRH29669	Soybean	plastid	42.15	40.51
KRH24671	Soybean	cytosol, plastid	42.73	40.48
KRG89888	Soybean	nucleus	42.15	40.42
KRH29668	Soybean	nucleus	42.26	40.4
KRH17965	Soybean	plastid	42.26	39.87
KRH18682	Soybean	cytosol, mitochondrion	41.69	39.63
KRH21441	Soybean	cytosol	40.18	38.24
KRH30640	Soybean	cytosol	8.2	37.97
KRH50048	Soybean	cytosol	39.03	37.14
GSMUA_Achr6P25100_001	Banana	cytosol	41.57	3.0

Protein Annotations

Gene3D:1.20.245.10	Gene3D:2.60.60.20	Gene3D:3.10.450.60	Gene3D:4.10.372.10	Gene3D:4.10.375.10	MapMan:50.1.12
EMBL:ACUP02004908	EnsemblPlantsGene:GLYMA_08G189600	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515
GO:GO:0006629	GO:GO:0006633	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016491	GO:GO:0016702	GO:GO:0031408	GO:GO:0046872	GO:GO:0051213	GO:GO:0055114
InterPro:IPR001024	InterPro:IPR013819	InterPro:IPR027433	UniProt:K7L7J7	EnsemblPlants:KRH44095	ProteinID:KRH44095
ProteinID:KRH44095.1	InterPro:LipOase	InterPro:LipOase_C	InterPro:LipOase_CS	InterPro:LipOase_C_sf	InterPro:LipOase_Fe_BS
InterPro:LipOase_plant	InterPro:Lipoxygenase_dom_3	PFAM:PF00305	PFAM:PF01477	InterPro:PLAT/LH2_dom	InterPro:PLAT/LH2_dom_sf
PRINTS:PR00087	PRINTS:PR00468	ScanProsite:PS00081	ScanProsite:PS00711	PFscan:PS50095	PFscan:PS51393
PANTHER:PTHR11771	PANTHER:PTHR11771:SF48	SMART:SM00308	SUPFAM:SSF48484	SUPFAM:SSF49723	UniParc:UPI00023C67CD
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr8:+:15234279..15239053

Molecular Weight (calculated)

97180.0 Da

IEP (calculated)

6.407

GRAVY (calculated)

-0.294

Length

866 amino acids

Sequence
(BLAST)

001: MFPVVSGIFN RGQKLKGTVV LMRKNVLDIN ALTSAQSATG IIGGAIGAVG DIIGTGVDTL TSFLGRSVAL KLISATSADS TGKGKVGKQT FLEGLVASLP
101: TLRAGESALD IHFEWDSDMG IPGAFYIENF MQVEFFLVSL TLEDVPNHGT IHFVCNSWVY NAKMYKNTRI FFTNKTYLPS ETPGPLVKYR EEELKTLRGD
201: GTGQRKEHER IYDYDVYNDL GTPEKDNLAR PVLGGSTLPY PRRGRTGRNK SKKDPKSEIR SDSVYIPRDE SFGHLKSSDF LAYILKSASQ NVIPQLQSAL
301: RLQFNQPEFT SFDDVRGLYD GGIKLPTDAL SKLSPIPLFT ELFRTDGEQV LKFPTPKVIQ VNLSGWMTDE EFAREMIAGV NPHIIKKLEE FPPKSKLDSQ
401: LYGDNTSTIT KENLEPNLGG LTVEQAIQNN KLFILDHHDT LIPYLRRINA TETKAYATRT ILFLQDNGTL KPLAIELSKP HPQGDNFGPV SDVYLPAEQG
501: VEASIWLLAK AYVIVNDSCY HQLVSHWLNT HAVVEPFVIA TNRHLSVVHP IHKLLLPHYH DTMNINALAR NVLVNAEGII ESTFFWGKYA LEMSAVVYKD
601: WVFPEQALPA DLVKRGVAVE DSSSPHGLRL LIEDYPYAAD GLEIWATIKS WVQEYVSFYY KSDAAIAQDA ELQAFWKELV EVGHGDKKNE PWWGKMKTRQ
701: ELIESCTTLI WTASALHAAV NFGQYPYGGY ILNRPTLSRR FMPEIGSPEY DELAKNPQKA YLKTITGKSD ALKDLTIIEV LSRHASDELY LGQRDGGEFW
801: TFDKEPLEAF KRFGKKLAEI EQKLIQRNND ETLRNRYGPV QMPYTLLYPS SEEGLTCRGI PNSISI

Best Arabidopsis Sequence Match ( AT1G17420.1 )
(BLAST)

001: MALAKELMGY PLITERSSLV SSASHFKKRT QSTQFSINPF DRRPRKTKSG VVAAISEDLV KTLRFSTTTG DRKSEEEEKA AVKFKVRAVV TVRNKNKEDL
101: KETLVKHLDA FADKIGRNIV LELISTQLDP KTKLPKKSNA AVLKDWSKKS KTKAERVHYT AEFTVDAAFG SPGAITVMNK HQKEFFLESI TIEGFALGPV
201: HFPCNSWVQS QKDHPDKRIF FTNQPYLPNE TPSGLRVLRE KELKNLRGDG SGVRKLSDRI YDFDVYNDLG NPDKSSELSR PKLGGKEVPY PRRCRTGRQS
301: TVSDKDAESR VEKPLPMYVP RDEQFEESKQ DTFAAGRLKA VLHHLIPSLK ASIVAEDFAD FGEIDRLYKE GLLLKLGFQD DIFKKFPLPK VVVDTLQEST
401: KGLLKYDTPK ILSKDKNAWL RDDEFARQAI AGINPVNIER VKTFPPVSNL DPKIYGPQHS ALTDDHIIGH LDGFSVQQAL EENRLYMLDY HDIFLPFLDR
501: INALDGRKAY ATRTIFFLTR LGTLKPVAIE LSLPPHGPKH RSKRVLTPPV DATSNWMWQL AKAHVSSNDA GVHQLVNHWL RTHACLEPFI LAAHRQLSAM
601: HPIFKLLDPH MRYTLEINAL ARQSLISADG VIEGGFTAGA YGMEMSAAAY KSSWRFDMEG LPADLIRRGM AIPDATQPHG LKLLIEDYPY ANDGLLLWSA
701: IQTWVRTYVE RYYPNPNLIK TDSELQSWYS ESINVGHADL RDADWWPELS TVDDLVSILT TLIWLASAQH AALNFGQYPY GGYVPNRPPL MRRLIPDESD
801: PEYASFISHP EKYYFSSMPS LAQTSKFMAV VDTLSTHSPD EEYIGERQQP SIWTGDAEIV EAFYGFAAEI GRIEKEIEKR NADPDRRNRC GAGVLPYELL
901: VPSSEPGVTC RGVPNSVSI

Arabidopsis Description

LOX3Lipoxygenase 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LNR3]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.