Factsheet for GSMUA_Achr9P19250_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
plastid 1
cytosol 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

plasma membrane: 21334471

msms PMID: 21334471 doi

A Vertommen, AL Møller, JH Cordewener, R Swennen, B Panis, C Finnie, AH America, SC Carpentier

Laboratory of Tropical Crop Improvement, Department of Biosystems, K.U. Leuven, Kasteelpark Arenberg 13, PO box 2455, B-3001 Heverlee, Belgium.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	cytosol	66.77	74.27
GSMUA_AchrUn_...	Banana	cytosol	59.73	72.45
GSMUA_Achr1P24370_001	Banana	cytosol	64.25	72.14
GSMUA_Achr6P25090_001	Banana	cytosol	62.46	70.88
GSMUA_Achr6P25110_001	Banana	cytosol	58.89	70.53
CDY70916	Canola	cytosol	37.01	69.84
GSMUA_Achr1P22970_001	Banana	cytosol	61.51	69.15
VIT_14s0128g00780.t01	Wine grape	cytosol	62.25	68.92
KRH35534	Soybean	cytosol	32.28	68.53
PGSC0003DMT400028158	Potato	cytosol	61.72	68.1
Solyc08g029000.2.1	Tomato	cytosol, extracellular, nucleus	61.41	67.83
VIT_14s0128g00790.t01	Wine grape	cytosol	61.93	67.78
PGSC0003DMT400063654	Potato	cytosol	34.91	67.62
Solyc01g099160.2.1	Tomato	cytosol, extracellular, nucleus	60.88	67.17
Solyc08g014000.2.1	Tomato	cytosol, nucleus, plastid	60.36	66.74
PGSC0003DMT400054145	Potato	cytosol	59.52	65.97
VIT_06s0004g01580.t01	Wine grape	cytosol	22.92	65.07
GSMUA_Achr6P25080_001	Banana	cytosol	53.0	65.03
KRH33939	Soybean	cytosol, endoplasmic reticulum	58.89	64.74
Bra021322.1-P	Field mustard	cytosol	58.25	64.64
PGSC0003DMT400063446	Potato	cytosol	54.47	64.43
KRH68548	Soybean	cytosol	57.94	64.22
AT1G55020.1	Thale cress	cytosol	57.73	63.91
PGSC0003DMT400063461	Potato	cytosol	46.48	63.69
Solyc01g099180.2.1	Tomato	cytosol	57.1	63.58
PGSC0003DMT400081370	Potato	cytosol	58.36	63.28
Solyc09g075860.2.1	Tomato	cytosol, nucleus	58.36	63.28
Solyc01g099190.2.1	Tomato	cytosol, extracellular, nucleus, plastid	56.78	62.94
VIT_05s0020g03170.t01	Wine grape	cytosol	57.62	62.56
Solyc01g099200.2.1	Tomato	cytosol, plastid	54.47	61.59
PGSC0003DMT400063452	Potato	cytosol	51.73	61.58
PGSC0003DMT400063469	Potato	cytosol	54.47	61.45
KRG91271	Soybean	cytosol	55.42	61.42
PGSC0003DMT400063477	Potato	cytosol	53.94	59.93
Solyc09g075870.1.1	Tomato	cytosol	53.73	59.84
AT3G22400.1	Thale cress	cytosol	55.42	59.48
Bra039948.1-P	Field mustard	cytosol	55.31	59.3
Solyc01g099210.2.1	Tomato	cytosol	53.73	59.21
CDY38326	Canola	cytosol	55.2	59.19
CDY46325	Canola	cytosol	54.89	59.18
KRH16725	Soybean	cytosol	14.3	58.87
KRH23266	Soybean	cytosol	51.1	58.84
KRH10050	Soybean	endoplasmic reticulum	52.79	58.58
Bra023829.1-P	Field mustard	cytosol	55.31	58.25
KRH23265	Soybean	endoplasmic reticulum, nucleus	52.89	58.08
KRH44090	Soybean	endoplasmic reticulum	52.47	58.02
CDY64191	Canola	cytosol	55.1	57.77
KRH44093	Soybean	endoplasmic reticulum	51.31	57.68
KRH44095	Soybean	endoplasmic reticulum	52.37	57.51
KRH62399	Soybean	cytosol, endoplasmic reticulum	14.2	57.2
KRH44097	Soybean	cytosol, endoplasmic reticulum	51.63	56.57
KRH47522	Soybean	endoplasmic reticulum, nucleus	51.42	56.53
KRH10053	Soybean	endoplasmic reticulum	50.58	56.39
KRH10051	Soybean	endoplasmic reticulum, nucleus	50.68	56.31
KRH47525	Soybean	endoplasmic reticulum	51.21	56.11
KRH23268	Soybean	endoplasmic reticulum	50.26	56.04
KRH47066	Soybean	endoplasmic reticulum, nucleus	50.47	55.88
KRH23269	Soybean	endoplasmic reticulum	48.27	55.84
KRH44094	Soybean	endoplasmic reticulum	50.79	55.71
KRH47067	Soybean	endoplasmic reticulum	50.47	55.56
KRH62403	Soybean	cytosol, endoplasmic reticulum	13.25	55.51
KRG88464	Soybean	cytosol	26.5	55.26
KRH57987	Soybean	cytosol	14.72	54.26
KRH47069	Soybean	endoplasmic reticulum	25.55	53.41
KRH47064	Soybean	endoplasmic reticulum	31.44	52.46
KRH44092	Soybean	nucleus	46.27	51.34
KRH13357	Soybean	endoplasmic reticulum	12.62	49.59
GSMUA_Achr2P05850_001	Banana	cytosol	42.38	48.97
Solyc01g099170.2.1	Tomato	cytosol, mitochondrion	26.29	48.92
Solyc01g099150.2.1	Tomato	nucleus	42.69	47.1
CDY43490	Canola	cytosol, plasma membrane	57.94	45.8
GSMUA_Achr8P22700_001	Banana	plastid	37.43	41.98
GSMUA_Achr3P11780_001	Banana	plastid	36.7	41.25
GSMUA_Achr9P12470_001	Banana	plastid	36.49	41.16
GSMUA_Achr3P07870_001	Banana	plastid	37.64	40.73
GSMUA_Achr9P16020_001	Banana	plastid	37.43	40.64
GSMUA_Achr10P...	Banana	cytosol	37.12	40.11
GSMUA_Achr6P28450_001	Banana	plastid	36.59	40.0
GSMUA_Achr6P25100_001	Banana	cytosol	51.31	4.06

Protein Annotations

Gene3D:1.20.245.10	Gene3D:2.60.60.20	Gene3D:3.10.450.60	Gene3D:4.10.372.10	Gene3D:4.10.375.10	MapMan:50.1.12
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0006629	GO:GO:0006633
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016491	GO:GO:0016702
GO:GO:0031408	GO:GO:0046872	GO:GO:0051213	GO:GO:0055114	EnsemblPlantsGene:GSMUA_Achr9G19250_001	EnsemblPlants:GSMUA_Achr9P19250_001
EnsemblPlants:GSMUA_Achr9T19250_001	InterPro:IPR001024	InterPro:IPR013819	InterPro:IPR027433	InterPro:LipOase	InterPro:LipOase_C
InterPro:LipOase_CS	InterPro:LipOase_C_sf	InterPro:LipOase_Fe_BS	InterPro:LipOase_plant	InterPro:Lipoxygenase_dom_3	UniProt:M0U1N2
PFAM:PF00305	PFAM:PF01477	InterPro:PLAT/LH2_dom	InterPro:PLAT/LH2_dom_sf	PRINTS:PR00087	PRINTS:PR00468
ScanProsite:PS00081	ScanProsite:PS00711	PFscan:PS50095	PFscan:PS51393	PANTHER:PTHR11771	PANTHER:PTHR11771:SF53
SMART:SM00308	SUPFAM:SSF48484	SUPFAM:SSF49723	UniParc:UPI0002953342	SEG:seg	:

Description

Lipoxygenase A [Source:GMGC_GENE;Acc:GSMUA_Achr9G19250_001]

Coordinates

chr9:+:18527303..18531054

Molecular Weight (calculated)

107512.0 Da

IEP (calculated)

6.785

GRAVY (calculated)

-0.301

Length

951 amino acids

Sequence
(BLAST)

001: MIRSNILGGS KGMAVKGTVV LMRKNTLDFT DFTASLLDGV QELLGQRVSL QLVSATVGDP KHGNRGVVGD PAYLDGFVSK LPSIAAGEST FDVTFHWQEK
101: NGVPGAVIVK NRHASQFYLK SITLKDFPGK GRIHFVCNSW VYSADKYKYD RVFFANTAYL PGETPAPLKP YREDELLNLR GEDVTGQLQE WDRIYDYAYY
201: NDLGNPDSDA ALARPVLGGS SEYPYPRRGR TGRPPTKTDP NSESRLPLIS LDIYVPRDER FGHLKMADFL TYALKALVQA VVPVLEAIAD ETPNEFDSFE
301: DILKLYEGGL PVAKVPLLDE LRDRIPFEMI RELFRTEGNQ RLLKLPIPQI IEVNKYAWRT DEEFAREMLA GVNPVIIRRL EVFPPVSKLD PSKYGNQNSR
401: ITAAHIEHNL EGLTVDQALG GNRLFILDHH DALMPYVNRI NSTASKIYAT RTVLFLRDDS TLKPLAIELS LPHPDGEQHG AVSEVYMPEE AGVEGSIWEL
501: AKAYVVVNDS GVHQLISHWL NTHATMEPFV IATNRHLSVL HPIHKLLTPH YRDTMNINAL ARQILINAGG ILEATVFPAK YAMEMSAVVY KNWNFVEQAL
601: PADLIKRGVA VKDSNNELRL LIKDYPYAVD GLAIWRTIET WVTEYCAIYY PNDAVLQADV ELQAWWKEVR EVGHGDKKDE AWWPQMQTVS ELTQACTTII
701: WVASALHAAL NFGQYPYAGY LPNRPTISRR FMPAPGTPEY EELKAHPDKA FLMTITSQLQ TILGVSLIEI LSMHSSDEVY LGQRDTPEWT TDQRALVAFN
801: RFGSTLKRIE DEIIGRNGDE SLKNRNGAAQ VPYTLLFPTS ERGLTGKGIP NSHRMQQGSN GFLFSCVSVI LVSHMEVNKI GHFESINKLN YRYYIRQSRH
901: KQQSTTPFAH HHTLHLQLID EHRDHRVSQF TAIITTWLQT KIYSRQRSPM S

Best Arabidopsis Sequence Match ( AT1G55020.1 )
(BLAST)

001: MFGELRDLLT GGGNETTTKK VKGTVVLMKK NVLDFNDFNA SFLDRLHEFL GNKITLRLVS SDVTDSENGS KGKLGKAAHL EDWITTITSL TAGESAFKVT
101: FDYETDFGYP GAFLIRNSHF SEFLLKSLTL EDVPGHGRVH YICNSWIYPA KHYTTDRVFF SNKTYLPHET PATLLKYREE ELVSLRGTGE GELKEWDRVY
201: DYAYYNDLGV PPKNPRPVLG GTQEYPYPRR GRTGRKPTKE DPQTESRLPI TSSLDIYVPR DERFGHLKMS DFLAYALKAI AQFIQPALEA VFDDTPKEFD
301: SFEDVLKIYE EGIDLPNQAL IDSIVKNIPL EMLKEIFRTD GQKFLKFPVP QVIKEDKTAW RTDEEFAREM LAGLNPVVIQ LLKEFPPKSK LDSESYGNQN
401: STITKSHIEH NLDGLTVEEA LEKERLFILD HHDTLMPYLG RVNTTTTKTY ASRTLLFLKD DGTLKPLVIE LSLPHPNGDK FGAVSEVYTP GEGVYDSLWQ
501: LAKAFVGVND SGNHQLISHW MQTHASIEPF VIATNRQLSV LHPVFKLLEP HFRDTMNINA LARQILINGG GIFEITVFPS KYAMEMSSFI YKNHWTFPDQ
601: ALPAELKKRG MAVEDPEAPH GLRLRIKDYP YAVDGLEVWY AIESWVRDYI FLFYKIEEDI QTDTELQAWW KEVREEGHGD KKSEPWWPKM QTREELVESC
701: TIIIWVASAL HAAVNFGQYP VAGYLPNRPT ISRQYMPKEN TPEFEELEKN PDKVFLKTIT AQLQTLLGIS LIEILSTHSS DEVYLGQRDS KEWAAEKEAL
801: EAFEKFGEKV KEIEKNIDER NDDETLKNRT GLVKMPYTLL FPSSEGGVTG RGIPNSVSI

Arabidopsis Description

LOX1Linoleate 9S-lipoxygenase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q06327]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.