Factsheet for GSMUA_Achr6P25110_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 1
mitochondrion 3
cytosol 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P25090_001	Banana	cytosol	96.85	91.77
GSMUA_AchrUn_...	Banana	cytosol	64.86	65.69
GSMUA_AchrUn_...	Banana	cytosol	68.26	63.39
CDY70916	Canola	cytosol	40.05	63.1
GSMUA_Achr6P25080_001	Banana	cytosol	61.21	62.71
GSMUA_Achr1P24370_001	Banana	cytosol	66.37	62.22
KRH35534	Soybean	cytosol	34.26	60.71
GSMUA_Achr1P22970_001	Banana	cytosol	63.6	59.69
GSMUA_Achr9P19250_001	Banana	plasma membrane	70.53	58.89
PGSC0003DMT400063654	Potato	cytosol	36.4	58.86
VIT_14s0128g00780.t01	Wine grape	cytosol	62.09	57.39
VIT_14s0128g00790.t01	Wine grape	cytosol	62.22	56.85
PGSC0003DMT400063446	Potato	cytosol	57.18	56.47
PGSC0003DMT400054145	Potato	cytosol	60.96	56.41
Solyc01g099160.2.1	Tomato	cytosol, extracellular, nucleus	61.21	56.38
Solyc08g029000.2.1	Tomato	cytosol, extracellular, nucleus	61.08	56.33
Solyc08g014000.2.1	Tomato	cytosol, nucleus, plastid	60.96	56.28
Bra021322.1-P	Field mustard	cytosol	60.71	56.24
PGSC0003DMT400028158	Potato	cytosol	60.83	56.03
KRH68548	Soybean	cytosol	60.2	55.71
AT1G55020.1	Thale cress	cytosol	60.2	55.65
KRH33939	Soybean	cytosol, endoplasmic reticulum	59.57	54.68
VIT_06s0004g01580.t01	Wine grape	cytosol	23.05	54.63
PGSC0003DMT400063461	Potato	cytosol	47.36	54.18
Solyc01g099190.2.1	Tomato	cytosol, extracellular, nucleus, plastid	58.31	53.96
KRG91271	Soybean	cytosol	58.19	53.85
Solyc01g099200.2.1	Tomato	cytosol, plastid	56.93	53.75
KRH23266	Soybean	cytosol	55.79	53.63
PGSC0003DMT400063469	Potato	cytosol	56.8	53.5
PGSC0003DMT400063452	Potato	cytosol	53.78	53.44
Solyc01g099180.2.1	Tomato	cytosol	57.3	53.28
KRH23265	Soybean	endoplasmic reticulum, nucleus	57.81	53.0
PGSC0003DMT400063477	Potato	cytosol	57.05	52.92
Solyc01g099210.2.1	Tomato	cytosol	57.43	52.84
PGSC0003DMT400081370	Potato	cytosol	58.31	52.79
KRH16725	Soybean	cytosol	15.24	52.38
Solyc09g075860.2.1	Tomato	cytosol, nucleus	57.68	52.22
KRH10050	Soybean	endoplasmic reticulum	56.17	52.04
KRH47067	Soybean	endoplasmic reticulum	56.42	51.85
KRH44090	Soybean	endoplasmic reticulum	56.05	51.74
VIT_05s0020g03170.t01	Wine grape	cytosol	57.05	51.71
KRH62399	Soybean	cytosol, endoplasmic reticulum	15.37	51.69
KRH44093	Soybean	endoplasmic reticulum	54.79	51.42
KRH47522	Soybean	endoplasmic reticulum, nucleus	55.79	51.21
KRH10051	Soybean	endoplasmic reticulum, nucleus	55.16	51.17
KRH44097	Soybean	cytosol, endoplasmic reticulum	55.79	51.04
Solyc09g075870.1.1	Tomato	cytosol	54.79	50.94
KRH47066	Soybean	endoplasmic reticulum, nucleus	54.66	50.52
KRH44095	Soybean	endoplasmic reticulum	55.04	50.46
AT3G22400.1	Thale cress	cytosol	56.17	50.34
KRH23268	Soybean	endoplasmic reticulum	54.03	50.29
KRH10053	Soybean	endoplasmic reticulum	54.03	50.29
KRH44094	Soybean	endoplasmic reticulum	54.66	50.06
Bra039948.1-P	Field mustard	cytosol	55.92	50.06
CDY38326	Canola	cytosol	55.92	50.06
CDY46325	Canola	cytosol	55.42	49.89
KRH47525	Soybean	endoplasmic reticulum	54.53	49.88
KRH23269	Soybean	endoplasmic reticulum	51.01	49.27
Bra023829.1-P	Field mustard	cytosol	55.54	48.84
KRH62403	Soybean	cytosol, endoplasmic reticulum	13.85	48.46
CDY64191	Canola	cytosol	55.29	48.4
KRH47064	Soybean	endoplasmic reticulum	34.51	48.07
KRH57987	Soybean	cytosol	15.49	47.67
KRG88464	Soybean	cytosol	26.95	46.93
KRH44092	Soybean	nucleus	50.13	46.44
KRH47069	Soybean	endoplasmic reticulum	26.32	45.93
KRH13357	Soybean	endoplasmic reticulum	13.6	44.63
GSMUA_Achr2P05850_001	Banana	cytosol	44.84	43.26
Solyc01g099170.2.1	Tomato	cytosol, mitochondrion	27.46	42.66
CDY43490	Canola	cytosol, plasma membrane	60.71	40.07
GSMUA_Achr8P22700_001	Banana	plastid	41.81	39.15
Solyc01g099150.2.1	Tomato	nucleus	42.07	38.75
GSMUA_Achr3P07870_001	Banana	plastid	41.18	37.2
GSMUA_Achr9P16020_001	Banana	plastid	40.68	36.87
GSMUA_Achr3P11780_001	Banana	plastid	38.92	36.52
GSMUA_Achr10P...	Banana	cytosol	40.3	36.36
GSMUA_Achr9P12470_001	Banana	plastid	38.04	35.82
GSMUA_Achr6P28450_001	Banana	plastid	37.78	34.48
GSMUA_Achr6P25100_001	Banana	cytosol	57.81	3.82

Protein Annotations

Gene3D:1.20.245.10	Gene3D:2.60.60.20	Gene3D:3.10.450.60	Gene3D:4.10.372.10	Gene3D:4.10.375.10	MapMan:50.1.12
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0006629	GO:GO:0006633
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016491	GO:GO:0016702
GO:GO:0031408	GO:GO:0046872	GO:GO:0051213	GO:GO:0055114	EnsemblPlantsGene:GSMUA_Achr6G25110_001	EnsemblPlants:GSMUA_Achr6P25110_001
EnsemblPlants:GSMUA_Achr6T25110_001	InterPro:IPR001024	InterPro:IPR013819	InterPro:IPR027433	InterPro:LipOase	InterPro:LipOase_C
InterPro:LipOase_CS	InterPro:LipOase_C_sf	InterPro:LipOase_plant	InterPro:Lipoxygenase_dom_3	UniProt:M0TA07	PFAM:PF00305
PFAM:PF01477	InterPro:PLAT/LH2_dom	InterPro:PLAT/LH2_dom_sf	PRINTS:PR00087	PRINTS:PR00468	ScanProsite:PS00081
PFscan:PS50095	PFscan:PS51393	PANTHER:PTHR11771	PANTHER:PTHR11771:SF53	SMART:SM00308	SUPFAM:SSF48484
SUPFAM:SSF49723	UniParc:UPI000294F252	SEG:seg	:	:	:

Description

Lipoxygenase A [Source:GMGC_GENE;Acc:GSMUA_Achr6G25110_001]

Coordinates

chr6:+:26145863..26149162

Molecular Weight (calculated)

89165.2 Da

IEP (calculated)

7.244

GRAVY (calculated)

-0.301

Length

794 amino acids

Sequence
(BLAST)

001: MLCINKYHLR CNRSHCNGVQ VKGTVVLMPK NVLDFNDLAG NVIDGLFDIL GQNVTFQLVS ATVGDPNNGN RGVVGSPASL QYLGRLPSLA AGESRFSVTF
101: QWEENKGIPG AVIVKNKHAT QFFLKTLTVD NFPGKGRIHF VCNSWVYPAN KYRYDRIFFA NTTYLPGATP APLNPYREDE LRHLRGDDVT SELQEWDRVY
201: GYAVYNDLGT PDNANLVRPI LGGSAVYPYP RRGKTNRPMT RKDPNTESRL GTLDTLNVYV PRDERFGHEG IPVPYVPLFD ELRQSIPFEM VKEVLRVQGG
301: QRLLKLPKPQ IIKFDKSAWR TDEEFAREMV AGVHPVLIKL LKVFPPVSEL DPNRYGNQNS TITAAHIEAN LDGLTVDEAL SSNRLFILDH HDVFMPYIAR
401: INSTAHKAYS TRTLLFLKAD STLKPLAIEL SLPHPDGEQY GAVSKVYSAA ENGVDGSLWQ LAKAYVGVVD VGVHQLVSHW LGTHAILEPF IIATNRHLSV
501: VHPINKLLTP HYRDTMNINA LARQSLINAD GILEKTSVQG KFSLEYSSWV YKNHWNFVDQ ALPDDLVKRG VAVRDQNGEL SLLIKDYPYA EDGLQIWKAI
601: ETWVTEYCAI YYPSDDALRA DSELQAWWKE IRDSCTTIIW LASAFHAVIN FGQYPYGGYV PNRPTISRRL VPEPGTPEHD LLEKNPDKVF LRTISSQYQT
701: IIGVSLLEIL STHASDEVYL GQRDTSEWTT DRKALEAFQR FGKALKSIED DINKKNADPS LKNRNGPAKM PFTLLFPSSE VGITGKGIPN SVSI

Best Arabidopsis Sequence Match ( AT1G17420.1 )
(BLAST)

001: MALAKELMGY PLITERSSLV SSASHFKKRT QSTQFSINPF DRRPRKTKSG VVAAISEDLV KTLRFSTTTG DRKSEEEEKA AVKFKVRAVV TVRNKNKEDL
101: KETLVKHLDA FADKIGRNIV LELISTQLDP KTKLPKKSNA AVLKDWSKKS KTKAERVHYT AEFTVDAAFG SPGAITVMNK HQKEFFLESI TIEGFALGPV
201: HFPCNSWVQS QKDHPDKRIF FTNQPYLPNE TPSGLRVLRE KELKNLRGDG SGVRKLSDRI YDFDVYNDLG NPDKSSELSR PKLGGKEVPY PRRCRTGRQS
301: TVSDKDAESR VEKPLPMYVP RDEQFEESKQ DTFAAGRLKA VLHHLIPSLK ASIVAEDFAD FGEIDRLYKE GLLLKLGFQD DIFKKFPLPK VVVDTLQEST
401: KGLLKYDTPK ILSKDKNAWL RDDEFARQAI AGINPVNIER VKTFPPVSNL DPKIYGPQHS ALTDDHIIGH LDGFSVQQAL EENRLYMLDY HDIFLPFLDR
501: INALDGRKAY ATRTIFFLTR LGTLKPVAIE LSLPPHGPKH RSKRVLTPPV DATSNWMWQL AKAHVSSNDA GVHQLVNHWL RTHACLEPFI LAAHRQLSAM
601: HPIFKLLDPH MRYTLEINAL ARQSLISADG VIEGGFTAGA YGMEMSAAAY KSSWRFDMEG LPADLIRRGM AIPDATQPHG LKLLIEDYPY ANDGLLLWSA
701: IQTWVRTYVE RYYPNPNLIK TDSELQSWYS ESINVGHADL RDADWWPELS TVDDLVSILT TLIWLASAQH AALNFGQYPY GGYVPNRPPL MRRLIPDESD
801: PEYASFISHP EKYYFSSMPS LAQTSKFMAV VDTLSTHSPD EEYIGERQQP SIWTGDAEIV EAFYGFAAEI GRIEKEIEKR NADPDRRNRC GAGVLPYELL
901: VPSSEPGVTC RGVPNSVSI

Arabidopsis Description

LOX3Lipoxygenase 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LNR3]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.