Factsheet for GSMUA_Achr3P11780_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr3P29580_001
GSMUA_Achr4P11110_001
GSMUA_Achr4P25000_001
GSMUA_Achr5P12940_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G45140.1	GSMUA_Achr3P29580_001	AT5G18110.1	11117257
AT3G45140.1	GSMUA_Achr4P11110_001	AT5G18110.1	11117257
AT3G45140.1	GSMUA_Achr4P25000_001	AT5G35620.1	11117257
AT3G45140.1	GSMUA_Achr5P12940_001	AT5G35620.1	11117257

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_13s0064g01490.t01	Wine grape	cytosol	32.62	69.17
GSMUA_Achr9P12470_001	Banana	plastid	63.71	63.94
VIT_06s0004g01500.t01	Wine grape	cytosol	57.33	61.31
VIT_13s0064g01480.t01	Wine grape	plastid	64.3	60.24
CDY61034	Canola	cytosol	31.56	59.73
Solyc01g009680.2.1	Tomato	plastid	31.09	59.37
VIT_06s0004g01480.t01	Wine grape	cytosol	55.32	59.02
VIT_13s0064g01500.t01	Wine grape	cytosol	17.38	58.8
PGSC0003DMT400020118	Potato	cytosol	47.75	58.3
CDY07409	Canola	cytosol	26.36	57.62
VIT_06s0004g01510.t01	Wine grape	plastid	61.23	57.49
KRH29669	Soybean	plastid	60.52	56.83
CDY72550	Canola	cytosol	21.51	56.7
PGSC0003DMT400081909	Potato	plastid	59.69	56.17
VIT_06s0004g01460.t01	Wine grape	plastid	39.48	55.85
KRH24671	Soybean	cytosol, plastid	59.81	55.36
KRH29668	Soybean	nucleus	59.22	55.3
VIT_06s0004g01470.t01	Wine grape	cytosol	58.98	55.26
Solyc01g006540.2.1	Tomato	plastid	58.51	55.25
Solyc01g006560.2.1	Tomato	plastid	58.27	54.66
KRG89883	Soybean	cytosol, plastid	53.78	52.97
Solyc12g011040.1.1	Tomato	nucleus, plastid	55.79	52.91
CDY16339	Canola	plastid	47.04	52.3
VIT_06s0004g01450.t01	Wine grape	cytosol, extracellular	52.84	52.04
KRG89889	Soybean	cytosol, plastid	52.6	51.74
CDY04196	Canola	plastid	54.37	51.74
Bra004057.1-P	Field mustard	cytosol	53.78	51.07
CDY61881	Canola	cytosol	21.39	50.99
AT3G45140.1	Thale cress	plastid	53.55	50.56
KRH17965	Soybean	plastid	54.61	50.33
KRG89888	Soybean	nucleus	53.66	50.28
Bra004059.1-P	Field mustard	plastid	51.18	50.0
KRH18682	Soybean	cytosol, mitochondrion	53.78	49.95
CDX91565	Canola	plastid	52.96	49.78
CDX67920	Canola	plastid	53.07	49.67
Bra004060.1-P	Field mustard	plastid	52.72	49.61
Bra003526.1-P	Field mustard	plastid	52.96	49.56
CDY61036	Canola	plastid	52.01	49.49
CDX79416	Canola	plastid	52.84	49.45
CDY61880	Canola	plastid	31.21	47.91
Bra022535.1-P	Field mustard	plastid	44.56	46.49
GSMUA_Achr6P28450_001	Banana	plastid	46.22	44.94
CDY70245	Canola	plastid	23.64	43.67
Bra004058.1-P	Field mustard	plastid	53.31	42.63
CDY07408	Canola	plastid	23.05	42.58
GSMUA_Achr8P22700_001	Banana	plastid	42.08	41.98
CDY07407	Canola	cytosol, plastid	54.26	41.84
GSMUA_Achr9P16020_001	Banana	plastid	42.79	41.32
GSMUA_Achr10P...	Banana	cytosol	42.32	40.68
GSMUA_Achr3P07870_001	Banana	plastid	42.08	40.5
GSMUA_AchrUn_...	Banana	cytosol	37.47	40.43
GSMUA_AchrUn_...	Banana	cytosol	40.66	40.23
GSMUA_Achr1P24370_001	Banana	cytosol	40.07	40.02
CDY70606	Canola	plastid	18.56	39.75
GSMUA_Achr2P05850_001	Banana	cytosol	38.53	39.61
GSMUA_Achr1P22970_001	Banana	cytosol	39.36	39.36
GSMUA_Achr6P25110_001	Banana	cytosol	36.52	38.92
CDY61882	Canola	plastid	17.61	38.5
GSMUA_Achr6P25090_001	Banana	cytosol	37.35	37.71
GSMUA_Achr9P19250_001	Banana	plasma membrane	41.25	36.7
GSMUA_Achr6P25080_001	Banana	cytosol	30.5	33.29
CDY70843	Canola	cytosol	4.73	31.75
GSMUA_Achr6P25100_001	Banana	cytosol	30.02	2.11

Protein Annotations

Gene3D:1.20.245.10	MapMan:11.7.1.2	Gene3D:2.60.60.20	Gene3D:3.10.450.60	Gene3D:4.10.372.10	Gene3D:4.10.375.10
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0006629	GO:GO:0006633
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016491	GO:GO:0016702
GO:GO:0031408	GO:GO:0046872	GO:GO:0051213	GO:GO:0055114	EnsemblPlantsGene:GSMUA_Achr3G11780_001	EnsemblPlants:GSMUA_Achr3P11780_001
EnsemblPlants:GSMUA_Achr3T11780_001	InterPro:IPR001024	InterPro:IPR013819	InterPro:IPR027433	InterPro:LipOase	InterPro:LipOase_C
InterPro:LipOase_CS	InterPro:LipOase_C_sf	InterPro:LipOase_Fe_BS	InterPro:LipOase_plant	InterPro:Lipoxygenase_dom_3	UniProt:M0SDU5
PFAM:PF00305	PFAM:PF01477	InterPro:PLAT/LH2_dom	InterPro:PLAT/LH2_dom_sf	PRINTS:PR00087	PRINTS:PR00468
ScanProsite:PS00081	ScanProsite:PS00711	PFscan:PS50095	PFscan:PS51393	PANTHER:PTHR11771	PANTHER:PTHR11771:SF89
SMART:SM00308	SUPFAM:SSF48484	SUPFAM:SSF49723	UniParc:UPI000296A4DE	SEG:seg	:

Description

Lipoxygenase 2.3, chloroplastic [Source:GMGC_GENE;Acc:GSMUA_Achr3G11780_001]

Coordinates

chr3:-:8736855..8741713

Molecular Weight (calculated)

95058.4 Da

IEP (calculated)

7.072

GRAVY (calculated)

-0.332

Length

846 amino acids

Sequence
(BLAST)

001: MTNMLKQGLR APTHVPSLFL SHKPLLSGHG ASCVPMVSSS SARRGRASRR RRQICCSAAA EESTPSVVAA AKRPVTVNAV LTVLPTVGGA FAHIGITRGL
101: DDIGDLLGKS LHLELVSAEL DPATGLEKKT IAAFAHKASH GVETAKYEAS FSVPPSFGEI GAVFVRNEHH KEMYLSDIVL SSADDSIAVN ISCKSWLHSK
201: FDNPEDRVFF TNKSYLPSQT PTGLQKLREK ELEILRGNGT GQRKKFERIY DYDTYNDLGN PDKNPSTARP VLGGSEALPY PRRCRSGRPR SKKDPQSEQK
301: GDVYVPRDEN FSEVKQVTFS AKTLRSVLHA LVPSLQTVLV DAKLGFPYFT AIDSLFDEGV PLPKQDAFHV FRTVVPRLVK AVTQGAHSIL QFEVPEMLER
401: DKFSWFRDEE FGRQTLAGLN PLSIQLVTEF PLVSKLDPNI YGPPESLITE ELIEREIKGI MTVKEALEKK KMFILDYHDL FLPYVHKIRE LEDTTMYASR
501: TVFFLTPDDT LRPLAIELTR PASPTKPQWK QVFSPCWDAT GAWLWKLAKA HALAHDSGYH QLVSHWLRTH CCVEPYIIAA NRQLSQMHPI YRLLHPHFRY
601: TMEINALARG YLINADGIIE QTFSPGKYSL ELCSVAYGKL WRFDTEALPA DLIRRGMAVE DPAAEHGLKL TIEDYPYAQD GLLIWSAIKQ WVTDYVDYYY
701: PDASHVKEDS ELQEWWTEVR TKGHADKKDE PWWPVLNTQE DLIHVLTTII WVGSGHHAAV NFGQYHYAGY FPNRPTIART NMPVEDYSDE QLANGKLKEI
801: EGIIDGRNAN PEFKNRCGAG IVPYQLLKPY SEAGVTGMGV PNSISI

Best Arabidopsis Sequence Match ( AT3G45140.1 )
(BLAST)

001: MYCRESLSSL QTLNVAKSLS SLFPKQSALI NPISAGRRNN LPRPNLRRRC KVTASRANIE QEGNTVKEPI QNIKVKGYIT AQEEFLEGIT WSRGLDDIAD
101: IRGRSLLVEL ISAKTDQRIT VEDYAQRVWA EAPDEKYECE FEMPEDFGPV GAIKIQNQYH RQLFLKGVEL KLPGGSITFT CESWVAPKSV DPTKRIFFSD
201: KSYLPSQTPE PLKKYRKEEL ETLQGKNREE VGEFTKFERI YDYDVYNDVG DPDNDPELAR PVIGGLTHPY PRRCKTGRKP CETDPSSEQR YGGEFYVPRD
301: EEFSTAKGTS FTGKAVLAAL PSIFPQIESV LLSPQEPFPH FKAIQNLFEE GIQLPKDAGL LPLLPRIIKA LGEAQDDILQ FDAPVLINRD RFSWLRDDEF
401: ARQTLAGLNP YSIQLVEEWP LISKLDPAVY GDPTSLITWE IVEREVKGNM TVDEALKNKR LFVLDYHDLL LPYVNKVREL NNTTLYASRT LFFLSDDSTL
501: RPVAIELTCP PNINKPQWKQ VFTPGYDATS CWLWNLAKTH AISHDAGYHQ LISHWLRTHA CTEPYIIAAN RQLSAMHPIY RLLHPHFRYT MEINARARQS
601: LVNGGGIIET CFWPGKYALE LSSAVYGKLW RFDQEGLPAD LIKRGLAEED KTAEHGVRLT IPDYPFANDG LILWDAIKEW VTDYVKHYYP DEELITSDEE
701: LQGWWSEVRN IGHGDKKDEP WWPVLKTQDD LIGVVTTIAW VTSGHHAAVN FGQYGYGGYF PNRPTTTRIR MPTEDPTDEA LKEFYESPEK VLLKTYPSQK
801: QATLVMVTLD LLSTHSPDEE YIGEQQEASW ANEPVINAAF ERFKGKLQYL EGVIDERNVN ITLKNRAGAG VVKYELLKPT SEHGVTGMGV PYSISI

Arabidopsis Description

LOX2Lipoxygenase 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P38418]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.