Factsheet for VIT_06s0004g01470.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 3
mitochondrion 2
cytosol 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_06s0004g01500.t01	Wine grape	cytosol	72.76	83.06
VIT_06s0004g01480.t01	Wine grape	cytosol	71.32	81.21
VIT_13s0064g01500.t01	Wine grape	cytosol	20.04	72.4
VIT_06s0004g01460.t01	Wine grape	plastid	47.51	71.74
Solyc01g009680.2.1	Tomato	plastid	35.11	71.56
VIT_06s0004g01510.t01	Wine grape	plastid	71.32	71.48
VIT_13s0064g01490.t01	Wine grape	cytosol	30.01	67.92
VIT_06s0004g01450.t01	Wine grape	cytosol, extracellular	64.01	67.29
Os12t0559934-00	Rice	cytosol	14.29	66.15
PGSC0003DMT400020118	Potato	cytosol	49.83	64.94
VIT_13s0064g01480.t01	Wine grape	plastid	64.01	64.01
PGSC0003DMT400081909	Potato	plastid	62.46	62.74
KRH29669	Soybean	plastid	62.46	62.6
Solyc01g006560.2.1	Tomato	plastid	62.02	62.08
Solyc01g006540.2.1	Tomato	plastid	61.46	61.94
KRH29668	Soybean	nucleus	61.24	61.04
KRH24671	Soybean	cytosol, plastid	61.68	60.94
HORVU3Hr1G047210.1	Barley	cytosol	14.62	60.83
KRG89883	Soybean	cytosol, plastid	57.48	60.42
Solyc12g011040.1.1	Tomato	nucleus, plastid	59.14	59.87
KRG89889	Soybean	cytosol, plastid	56.81	59.65
GSMUA_Achr3P11780_001	Banana	plastid	55.26	58.98
KRG89888	Soybean	nucleus	58.91	58.91
KRH17965	Soybean	plastid	59.8	58.82
KRH18682	Soybean	cytosol, mitochondrion	58.25	57.74
GSMUA_Achr9P12470_001	Banana	plastid	53.27	57.06
OQU80925	Sorghum	cytosol	53.82	56.19
HORVU7Hr1G050680.1	Barley	peroxisome	41.31	54.53
Os08t0508800-01	Rice	nucleus, plasma membrane	55.15	53.9
Os08t0509100-01	Rice	nucleus	55.7	53.45
TraesCS4D01G347300.1	Wheat	cytosol	52.27	53.33
TraesCS7B01G145200.1	Wheat	plastid	54.37	52.91
TraesCS7A01G246200.1	Wheat	plastid	54.49	52.85
Zm00001d053675_P001	Maize	plastid	52.93	52.82
TraesCS7D01G244800.1	Wheat	plastid	54.37	52.68
TraesCS6B01G014400.1	Wheat	cytosol	34.77	52.25
HORVU6Hr1G033600.1	Barley	plastid	51.83	52.23
TraesCS7D01G029400.1	Wheat	cytosol	15.28	52.08
TraesCS6B01G193400.1	Wheat	plastid	51.49	51.61
Os02t0194700-01	Rice	plasma membrane	52.82	51.51
TraesCS6D01G154600.1	Wheat	plastid	51.38	51.5
Zm00001d015852_P004	Maize	plastid	51.94	51.48
TraesCS6A01G166000.1	Wheat	golgi	51.27	51.39
Zm00001d031449_P001	Maize	mitochondrion	54.37	51.36
TraesCS7A01G034900.1	Wheat	mitochondrion	16.61	51.19
KXG29701	Sorghum	plastid	51.94	51.15
VIT_00s0265g00170.t01	Wine grape	cytosol	28.35	50.69
TraesCS5D01G013400.1	Wheat	plastid	51.16	49.78
HORVU5Hr1G001180.1	Barley	plastid	51.05	49.52
TraesCS5A01G007900.1	Wheat	plastid	50.83	49.46
TraesCS5B01G006500.1	Wheat	plastid	50.83	49.46
HORVU7Hr1G006320.4	Barley	plastid	48.84	47.57
HORVU6Hr1G000510.1	Barley	plastid	48.84	47.32
TraesCS6D01G010100.1	Wheat	plastid	49.17	47.28
Os12t0559200-01	Rice	plastid	47.29	46.31
TraesCS5D01G041100.1	Wheat	plastid	48.17	46.03
VIT_01s0010g02750.t01	Wine grape	plastid	46.4	45.54
TraesCS5B01G033000.1	Wheat	plastid	47.4	45.05
VIT_14s0128g00780.t01	Wine grape	cytosol	42.75	44.94
VIT_14s0128g00790.t01	Wine grape	cytosol	42.19	43.84
Os12t0560200-00	Rice	cytosol	4.76	43.43
VIT_09s0002g01080.t01	Wine grape	cytosol	44.19	43.04
VIT_06s0004g01580.t01	Wine grape	cytosol	15.95	42.99
VIT_05s0020g03170.t01	Wine grape	cytosol	40.97	42.24
TraesCS5A01G032800.1	Wheat	mitochondrion	38.87	40.86
VIT_07s0141g00340.t01	Wine grape	cytosol, plastid	27.69	39.19
VIT_07s0289g00010.t01	Wine grape	cytosol	20.16	38.16

Protein Annotations

Gene3D:1.20.245.10	EntrezGene:100262173	wikigene:100262173	MapMan:11.7.1.2	Gene3D:2.60.60.20	Gene3D:3.10.450.60
Gene3D:4.10.372.10	Gene3D:4.10.375.10	ProteinID:CCB43749	ProteinID:CCB43749.1	UniProt:F6GUA7	EMBL:FN594951
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0006629	GO:GO:0006633
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016491	GO:GO:0016702
GO:GO:0031408	GO:GO:0046872	GO:GO:0051213	GO:GO:0055114	InterPro:IPR001024	InterPro:IPR013819
InterPro:IPR027433	EntrezGene:LOC100262173	wikigene:LOC100262173	InterPro:LipOase	InterPro:LipOase_C	InterPro:LipOase_CS
InterPro:LipOase_C_sf	InterPro:LipOase_Fe_BS	InterPro:LipOase_plant	InterPro:Lipoxygenase_dom_3	PFAM:PF00305	PFAM:PF01477
InterPro:PLAT/LH2_dom	InterPro:PLAT/LH2_dom_sf	PRINTS:PR00087	PRINTS:PR00468	ScanProsite:PS00081	ScanProsite:PS00711
PFscan:PS50095	PFscan:PS51393	PANTHER:PTHR11771	PANTHER:PTHR11771:SF89	SMART:SM00308	SUPFAM:SSF48484
SUPFAM:SSF49723	UniParc:UPI00019836EF	ArrayExpress:VIT_06s0004g01470	EnsemblPlantsGene:VIT_06s0004g01470	EnsemblPlants:VIT_06s0004g01470.t01	RefSeq:XP_002283147
RefSeq:XP_002283147.2	RefSeq:XP_002283147.3	SEG:seg	:	:	:

Description

Lipoxygenase [Source:UniProtKB/TrEMBL;Acc:F6GUA7]

Coordinates

chr6:+:1819011..1825968

Molecular Weight (calculated)

102290.0 Da

IEP (calculated)

7.338

GRAVY (calculated)

-0.404

Length

903 amino acids

Sequence
(BLAST)

001: MATQNLDMLK TQIHRPDNAR TFFLLNKPCF PSHSFDSFSF RPGPQLQKKY RNIRAGYVLN NAKAVAGGTR MSTSVKATVT VKLSDGGCFF NLVGLSHGSD
101: DILDLLGKSL LLEIVSAELD PKTGLEKKPI SGYARRTGQK DGEVIYESEF VIPGDFGEIG AVLVENEHKN EMYLKHIVLN GLPNGPIEFN CDSWVEPKFD
201: KPEKRVFFTF KSYLPSQTPR GLNSLREKDL VSLRGNGKGE RKTSDRIYDY DVYNDLGDPD SKSELARPVL GGSKKYPYPR RCRTGCPRSK IDPLSETRTG
301: TFYVPRDEEF SEVKQNSFIT KTAESVLDAL LPSLKAVLLD DPGLGFQHFS DIDQLYNQGM PIPKVKNQGP LQSIVLRLVK AIEDADDVVK FETPAMFHKD
401: KFSWLRDEEF SRQTLAGVNP YSIKLVTEWP LKSTLDPDVY GPPESAITTE LVGREIKDFM TVDKALEQKK LFIIDYHDLL LPFVSKVRRI KGTTLYGSRA
501: LFFLTPDGTL KPLAIELTRP PMDGKPQWNK VFTPSSEATG LWLWRFAKAH FLAHDSGYHE LVSHWLRTHC ATEPYIIATN RQLSVMHPIY RLLYPHCRYT
601: MKINALARQV LISADGVIES SFSPSKYSME LSSVAYDQQW RFDREALPAD LINRGIAIED PTAPHGLKLL IADYPFANDG LVLWDALKQW VADYVNYYYK
701: NASMVQSDPE LQAWWTEIRT KGHEDKKDEP WWPVLKTPED LIGIITTIVW VASAHHSAVN FGQYAFAGYF PNRPTIARIN MPCEDPTKEE WKQYPDSELL
801: VCFPSQIQAT KVMAILDVLS NHSPDEEYLG KHMEPTWGKE PAIKKAFERF AERLKELEKI INARNKDNSL KNRGGAGVVP YDVLKPFSKQ GVTGEGVPYS
901: ISI

Best Arabidopsis Sequence Match ( AT3G45140.1 )
(BLAST)

001: MYCRESLSSL QTLNVAKSLS SLFPKQSALI NPISAGRRNN LPRPNLRRRC KVTASRANIE QEGNTVKEPI QNIKVKGYIT AQEEFLEGIT WSRGLDDIAD
101: IRGRSLLVEL ISAKTDQRIT VEDYAQRVWA EAPDEKYECE FEMPEDFGPV GAIKIQNQYH RQLFLKGVEL KLPGGSITFT CESWVAPKSV DPTKRIFFSD
201: KSYLPSQTPE PLKKYRKEEL ETLQGKNREE VGEFTKFERI YDYDVYNDVG DPDNDPELAR PVIGGLTHPY PRRCKTGRKP CETDPSSEQR YGGEFYVPRD
301: EEFSTAKGTS FTGKAVLAAL PSIFPQIESV LLSPQEPFPH FKAIQNLFEE GIQLPKDAGL LPLLPRIIKA LGEAQDDILQ FDAPVLINRD RFSWLRDDEF
401: ARQTLAGLNP YSIQLVEEWP LISKLDPAVY GDPTSLITWE IVEREVKGNM TVDEALKNKR LFVLDYHDLL LPYVNKVREL NNTTLYASRT LFFLSDDSTL
501: RPVAIELTCP PNINKPQWKQ VFTPGYDATS CWLWNLAKTH AISHDAGYHQ LISHWLRTHA CTEPYIIAAN RQLSAMHPIY RLLHPHFRYT MEINARARQS
601: LVNGGGIIET CFWPGKYALE LSSAVYGKLW RFDQEGLPAD LIKRGLAEED KTAEHGVRLT IPDYPFANDG LILWDAIKEW VTDYVKHYYP DEELITSDEE
701: LQGWWSEVRN IGHGDKKDEP WWPVLKTQDD LIGVVTTIAW VTSGHHAAVN FGQYGYGGYF PNRPTTTRIR MPTEDPTDEA LKEFYESPEK VLLKTYPSQK
801: QATLVMVTLD LLSTHSPDEE YIGEQQEASW ANEPVINAAF ERFKGKLQYL EGVIDERNVN ITLKNRAGAG VVKYELLKPT SEHGVTGMGV PYSISI

Arabidopsis Description

LOX2Lipoxygenase 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P38418]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.