Factsheet for TraesCS6D01G010100.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G149200.1
TraesCS1B01G167100.1
TraesCS1D01G146500.1
TraesCS4A01G087900.1
TraesCS4B01G216300.1
TraesCS4D01G216800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G45140.1	TraesCS4A01G087900.1	AT5G18110.1	11117257
AT3G45140.1	TraesCS4B01G216300.1	AT5G18110.1	11117257
AT3G45140.1	TraesCS4D01G216800.1	AT5G18110.1	11117257
AT3G45140.1	TraesCS1A01G149200.1	AT5G35620.1	11117257
AT3G45140.1	TraesCS1B01G167100.1	AT5G35620.1	11117257
AT3G45140.1	TraesCS1D01G146500.1	AT5G35620.1	11117257

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU3Hr1G047210.1	Barley	cytosol	21.62	93.55
TraesCS6B01G014400.1	Wheat	cytosol	58.36	91.18
Os12t0559934-00	Rice	cytosol	16.19	77.95
TraesCS7D01G029400.1	Wheat	cytosol	20.66	73.21
TraesCS5D01G013400.1	Wheat	plastid	69.44	70.26
TraesCS5D01G041100.1	Wheat	plastid	61.24	60.85
Solyc01g009680.2.1	Tomato	plastid	27.48	58.24
VIT_13s0064g01490.t01	Wine grape	cytosol	24.71	58.15
Os12t0559200-01	Rice	plastid	56.66	57.7
CDY61034	Canola	cytosol	27.37	57.49
CDY07409	Canola	cytosol	22.58	54.78
Os12t0560200-00	Rice	cytosol	5.75	54.55
VIT_13s0064g01500.t01	Wine grape	cytosol	14.38	54.0
VIT_06s0004g01500.t01	Wine grape	cytosol	45.37	53.86
VIT_06s0004g01480.t01	Wine grape	cytosol	45.05	53.34
CDY72550	Canola	cytosol	18.21	53.27
VIT_06s0004g01460.t01	Wine grape	plastid	33.65	52.84
PGSC0003DMT400020118	Potato	cytosol	38.66	52.38
TraesCS6D01G154600.1	Wheat	plastid	49.2	51.28
VIT_13s0064g01480.t01	Wine grape	plastid	48.35	50.28
KRH29668	Soybean	nucleus	47.92	49.67
VIT_06s0004g01510.t01	Wine grape	plastid	47.6	49.61
KRG89883	Soybean	cytosol, plastid	45.37	49.59
VIT_06s0004g01470.t01	Wine grape	cytosol	47.28	49.17
KRH29669	Soybean	plastid	47.18	49.17
KRH24671	Soybean	cytosol, plastid	47.71	49.02
Solyc01g006560.2.1	Tomato	plastid	46.86	48.78
CDY61881	Canola	cytosol	18.42	48.73
PGSC0003DMT400081909	Potato	plastid	46.01	48.05
KRG89889	Soybean	cytosol, plastid	43.88	47.91
Solyc01g006540.2.1	Tomato	plastid	45.69	47.88
KRH17965	Soybean	plastid	46.33	47.39
KRH18682	Soybean	cytosol, mitochondrion	45.9	47.31
VIT_06s0004g01450.t01	Wine grape	cytosol, extracellular	43.13	47.15
KRG89888	Soybean	nucleus	45.26	47.07
TraesCS4D01G347300.1	Wheat	cytosol	43.88	46.55
TraesCS7D01G244800.1	Wheat	plastid	45.9	46.24
CDX91565	Canola	plastid	43.88	45.78
CDY16339	Canola	plastid	37.06	45.73
CDY04196	Canola	plastid	43.13	45.56
Solyc12g011040.1.1	Tomato	nucleus, plastid	43.24	45.52
TraesCS6D01G122000.1	Wheat	cytosol	14.91	45.16
Bra004057.1-P	Field mustard	cytosol	42.49	44.78
CDX79416	Canola	plastid	42.81	44.47
CDX67920	Canola	plastid	42.81	44.47
AT3G45140.1	Thale cress	plastid	42.39	44.42
Bra003526.1-P	Field mustard	plastid	42.7	44.36
Bra004060.1-P	Field mustard	plastid	42.39	44.27
CDY61036	Canola	plastid	41.85	44.21
Bra004059.1-P	Field mustard	plastid	40.68	44.11
Bra022535.1-P	Field mustard	plastid	37.06	42.91
CDY70843	Canola	cytosol	5.43	40.48
TraesCS4D01G294100.1	Wheat	plastid	39.19	39.91
TraesCS2D01G313400.1	Wheat	plastid	38.23	39.45
CDY61880	Canola	plastid	22.79	38.84
TraesCS1D01G215800.2	Wheat	cytosol	34.93	38.77
TraesCS5D01G388700.1	Wheat	cytosol, golgi, unclear	35.36	38.43
TraesCS4D01G035100.1	Wheat	cytosol	35.14	37.59
Bra004058.1-P	Field mustard	plastid	42.28	37.52
TraesCS5D01G388800.1	Wheat	cytosol	35.78	37.46
TraesCS5D01G513100.1	Wheat	cytosol	34.61	37.44
TraesCS4D01G035200.1	Wheat	cytosol	32.91	37.27
CDY07407	Canola	cytosol, plastid	43.02	36.83
CDY70245	Canola	plastid	16.83	34.5
CDY07408	Canola	plastid	16.19	33.19
TraesCS2D01G528500.1	Wheat	mitochondrion, plastid	32.59	33.01
TraesCS2D01G528400.1	Wheat	cytosol, mitochondrion	30.78	31.69
CDY70606	Canola	plastid	12.78	30.38
CDY61882	Canola	plastid	12.25	29.72
TraesCS6D01G121900.1	Wheat	mitochondrion	14.06	29.53

Protein Annotations

Gene3D:1.20.245.10	MapMan:11.7.1.2	Gene3D:2.60.60.20	Gene3D:3.10.450.60	Gene3D:4.10.375.10	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491
GO:GO:0016702	GO:GO:0046872	GO:GO:0055114	InterPro:IPR001024	InterPro:IPR013819	InterPro:LipOase
InterPro:LipOase_C	InterPro:LipOase_C_sf	InterPro:LipOase_Fe_BS	InterPro:LipOase_plant	PFAM:PF00305	PFAM:PF01477
InterPro:PLAT/LH2_dom	InterPro:PLAT/LH2_dom_sf	PRINTS:PR00087	PRINTS:PR00468	ScanProsite:PS00711	PFscan:PS50095
PFscan:PS51393	PANTHER:PTHR11771	PANTHER:PTHR11771:SF89	SMART:SM00308	SUPFAM:SSF48484	SUPFAM:SSF49723
EnsemblPlantsGene:TraesCS6D01G010100	EnsemblPlants:TraesCS6D01G010100.1	TIGR:cd01751	SEG:seg	:	:

Description

No Description!

Coordinates

chr6D:+:3851857..3855678

Molecular Weight (calculated)

106413.0 Da

IEP (calculated)

6.422

GRAVY (calculated)

-0.431

Length

939 amino acids

Sequence
(BLAST)

001: MVIMQTATRP LVGAHGAPFA RRAALVPKAR RQPGSPRRTS KIGSSSTSST TTTTTNLSEA NGPATSTVAR PDLHFDLNQA VELRATVTVN MKNFWLKEDM
101: LDQALDVFHN LFTQNWLYLE LVSSELDPKT GQEWDVVSGK VQHSRSLEED WHMYDASFMV PASFGPIGAV QVKNYHYTEM LLGDIKVFPA GENSGSSAVA
201: LFHCNSWINP SQYSPEKRSF FPLENSYLPS QTPKGVERLR ESELVALRGT GYGERKAYDR IYDYDVYNDL GDPCKDKSTN RPVLGGKEHP YPRRCRTGRP
301: HCRKYPLSET IPPKGVSIYV PEDENFTERK ELAFNTKLFM SLLHGICRIM KRSKHSSQSF PTLEAINAMY DDEFRNQPLQ PDGGKFKFIA EFLEKEALLL
401: FEKEGAEFLE GIRRVFEFET PEIHDRDKYA WFRDEEFARE TLAGVNPLSI QLVRELPLVS KLDEKIYGPA DSLITKEVIE EQINGVMTAE EAVAKKKLFM
501: LDYHDLYLPF VNKVRQLEGT TLYGSRALFF LAGDGTLRPI AIELTRPKSA SKPQWREVFT PASGHKASIT GSWQWQLAKA HVVCLDTGYH QLVSHWLRTH
601: CCVEPYIIAA NRQLSQMHPI YRLLAPSFRF TMEINAQARK LLINADGIIE STFSPGKYSM EISSAAYAEQ WRFDKEALPE DLIRRGMAVR GEDGKLELAI
701: EDYPYANDGL LVWDAIKQWA SDYVAHYYAC AADIVDDVEL QAWWKEVRTK GHADKKDEPW WPQLDCHESL VQTLSTIMWV ASAHHAAVNF SQYPYGGYVP
801: NRPSIARINM PSEMGPDGMR AFMEAPDKVL LDTFPSQYQS ALVMAILDVL SSHSSGEEYL GTYQEPAWQQ NGKIDKAFED FRESMLKIGV QVNKWNRDPE
901: RKNRCGPGMV PYVQLRPSDG DPMAAKTVMG MGVPTSISI

Best Arabidopsis Sequence Match ( AT1G17420.1 )
(BLAST)

001: MALAKELMGY PLITERSSLV SSASHFKKRT QSTQFSINPF DRRPRKTKSG VVAAISEDLV KTLRFSTTTG DRKSEEEEKA AVKFKVRAVV TVRNKNKEDL
101: KETLVKHLDA FADKIGRNIV LELISTQLDP KTKLPKKSNA AVLKDWSKKS KTKAERVHYT AEFTVDAAFG SPGAITVMNK HQKEFFLESI TIEGFALGPV
201: HFPCNSWVQS QKDHPDKRIF FTNQPYLPNE TPSGLRVLRE KELKNLRGDG SGVRKLSDRI YDFDVYNDLG NPDKSSELSR PKLGGKEVPY PRRCRTGRQS
301: TVSDKDAESR VEKPLPMYVP RDEQFEESKQ DTFAAGRLKA VLHHLIPSLK ASIVAEDFAD FGEIDRLYKE GLLLKLGFQD DIFKKFPLPK VVVDTLQEST
401: KGLLKYDTPK ILSKDKNAWL RDDEFARQAI AGINPVNIER VKTFPPVSNL DPKIYGPQHS ALTDDHIIGH LDGFSVQQAL EENRLYMLDY HDIFLPFLDR
501: INALDGRKAY ATRTIFFLTR LGTLKPVAIE LSLPPHGPKH RSKRVLTPPV DATSNWMWQL AKAHVSSNDA GVHQLVNHWL RTHACLEPFI LAAHRQLSAM
601: HPIFKLLDPH MRYTLEINAL ARQSLISADG VIEGGFTAGA YGMEMSAAAY KSSWRFDMEG LPADLIRRGM AIPDATQPHG LKLLIEDYPY ANDGLLLWSA
701: IQTWVRTYVE RYYPNPNLIK TDSELQSWYS ESINVGHADL RDADWWPELS TVDDLVSILT TLIWLASAQH AALNFGQYPY GGYVPNRPPL MRRLIPDESD
801: PEYASFISHP EKYYFSSMPS LAQTSKFMAV VDTLSTHSPD EEYIGERQQP SIWTGDAEIV EAFYGFAAEI GRIEKEIEKR NADPDRRNRC GAGVLPYELL
901: VPSSEPGVTC RGVPNSVSI

Arabidopsis Description

LOX3Lipoxygenase 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LNR3]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.