CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 3
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70795
CDX74645
CDX78777
CDX84118
CDY02645
CDY06456
CDY33686
CDY38487
CDY38545
CDY45630
CDY49143
CDY49364
CDY53257

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G45140.1	CDX70795	AT5G18110.1	11117257
AT3G45140.1	CDX78777	AT5G18110.1	11117257
AT3G45140.1	CDY02645	AT5G18110.1	11117257
AT3G45140.1	CDY38487	AT5G18110.1	11117257
AT3G45140.1	CDY45630	AT5G18110.1	11117257
AT3G45140.1	CDY49143	AT5G18110.1	11117257
AT3G45140.1	CDY53257	AT5G18110.1	11117257
AT3G45140.1	CDX74645	AT5G35620.1	11117257
AT3G45140.1	CDX84118	AT5G35620.1	11117257
AT3G45140.1	CDY06456	AT5G35620.1	11117257
AT3G45140.1	CDY33686	AT5G35620.1	11117257
AT3G45140.1	CDY38545	AT5G35620.1	11117257
AT3G45140.1	CDY49364	AT5G35620.1	11117257

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY72550	Canola	cytosol	77.52	93.46
CDY70843	Canola	cytosol	29.72	91.27
CDY61881	Canola	cytosol	78.29	85.35
CDY61034	Canola	cytosol	89.41	77.4
VIT_13s0064g01500.t01	Wine grape	cytosol	43.15	66.8
Solyc01g009680.2.1	Tomato	plastid	66.15	57.79
TraesCS7D01G029400.1	Wheat	cytosol	33.85	49.43
Os12t0559934-00	Rice	cytosol	24.55	48.72
TraesCS7A01G034900.1	Wheat	mitochondrion	34.63	45.73
Os12t0560200-00	Rice	cytosol	10.85	42.42
CDY04196	Canola	plastid	93.02	40.49
CDY61036	Canola	plastid	88.37	38.47
CDX79416	Canola	plastid	88.11	37.72
CDY70916	Canola	cytosol	49.1	37.7
CDX91565	Canola	plastid	87.08	37.44
CDX67920	Canola	plastid	86.82	37.17
AT3G45140.1	Thale cress	plastid	83.46	36.05
Bra004058.1-P	Field mustard	plastid	97.67	35.73
PGSC0003DMT400020118	Potato	cytosol	63.82	35.64
HORVU3Hr1G047210.1	Barley	cytosol	19.38	34.56
TraesCS6B01G014400.1	Wheat	cytosol	52.97	34.11
CDY07407	Canola	cytosol, plastid	95.09	33.55
VIT_13s0064g01480.t01	Wine grape	plastid	70.8	30.34
Solyc01g006560.2.1	Tomato	plastid	67.44	28.94
Solyc01g006540.2.1	Tomato	plastid	66.41	28.68
CDY16339	Canola	plastid	56.33	28.65
PGSC0003DMT400081909	Potato	plastid	65.63	28.25
KRH29668	Soybean	nucleus	65.12	27.81
KRH24671	Soybean	cytosol, plastid	65.37	27.68
KRH29669	Soybean	plastid	64.34	27.64
Solyc12g011040.1.1	Tomato	nucleus, plastid	63.57	27.58
KRG89883	Soybean	cytosol, plastid	60.72	27.36
OQU80925	Sorghum	cytosol	60.47	27.05
Zm00001d053675_P001	Maize	plastid	62.79	26.85
Os02t0194700-01	Rice	plasma membrane	63.82	26.67
Zm00001d015852_P004	Maize	plastid	62.53	26.56
HORVU7Hr1G050680.1	Barley	peroxisome	46.77	26.46
KRG89889	Soybean	cytosol, plastid	58.66	26.4
KXG29701	Sorghum	plastid	62.53	26.39
GSMUA_Achr3P11780_001	Banana	plastid	57.62	26.36
HORVU6Hr1G033600.1	Barley	plastid	60.72	26.23
KRH17965	Soybean	plastid	62.02	26.14
TraesCS4D01G347300.1	Wheat	cytosol	59.69	26.1
TraesCS6B01G193400.1	Wheat	plastid	60.47	25.97
TraesCS6A01G166000.1	Wheat	golgi	60.47	25.97
TraesCS6D01G154600.1	Wheat	plastid	60.47	25.97
KRG89888	Soybean	nucleus	59.69	25.58
GSMUA_Achr9P12470_001	Banana	plastid	55.56	25.5
KRH18682	Soybean	cytosol, mitochondrion	59.95	25.47
Os08t0508800-01	Rice	nucleus, plasma membrane	60.47	25.32
Os08t0509100-01	Rice	nucleus	60.47	24.87
Os12t0559200-01	Rice	plastid	58.91	24.73
TraesCS7D01G244800.1	Wheat	plastid	59.17	24.57
TraesCS7B01G145200.1	Wheat	plastid	58.91	24.57
TraesCS7A01G246200.1	Wheat	plastid	58.91	24.49
Zm00001d031449_P001	Maize	mitochondrion	60.47	24.48
TraesCS5B01G033000.1	Wheat	plastid	59.95	24.42
HORVU7Hr1G006320.4	Barley	plastid	58.14	24.27
TraesCS5D01G041100.1	Wheat	plastid	59.17	24.23
HORVU5Hr1G001180.1	Barley	plastid	57.62	23.95
TraesCS5B01G006500.1	Wheat	plastid	57.36	23.92
TraesCS5A01G007900.1	Wheat	plastid	57.11	23.81
TraesCS5D01G013400.1	Wheat	plastid	57.11	23.81
HORVU6Hr1G000510.1	Barley	plastid	55.3	22.96
CDY12655	Canola	plastid	54.01	22.89
TraesCS5A01G032800.1	Wheat	mitochondrion	50.65	22.82
TraesCS6D01G010100.1	Wheat	plastid	54.78	22.58
CDY07417	Canola	plastid	53.49	22.55
CDY49853	Canola	plastid	53.49	22.52
CDY51606	Canola	plastid	52.97	22.45
CDY64617	Canola	cytosol	52.97	22.31
CDX96769	Canola	cytosol	52.97	22.31
CDX81825	Canola	cytosol	52.45	22.09
CDY21750	Canola	cytosol, mitochondrion, plastid	52.45	22.09
VIT_13s0064g01490.t01	Wine grape	cytosol	22.74	22.06
CDY46325	Canola	cytosol	47.8	20.98
CDY38326	Canola	cytosol	47.8	20.86
CDY64191	Canola	cytosol	48.06	20.51
CDX82146	Canola	plastid	44.96	20.47
CDY28879	Canola	cytosol, endoplasmic reticulum, plastid	53.23	18.39
CDY43490	Canola	cytosol, plasma membrane	49.35	15.88
CDY61880	Canola	plastid	10.59	7.44
CDY70245	Canola	plastid	1.55	1.31
CDY70606	Canola	plastid	1.29	1.27
CDY07408	Canola	plastid	0.78	0.66
CDY61882	Canola	plastid	0.52	0.52

Protein Annotations

Gene3D:1.20.245.10	MapMan:50.1.12	GO:A0A078F364	UniProt:A0A078F364	EnsemblPlants:CDY07409	ProteinID:CDY07409
ProteinID:CDY07409.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152
GO:GO:0016491	GO:GO:0016702	GO:GO:0046872	GO:GO:0051213	GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00124397001
InterPro:IPR013819	InterPro:LipOase	InterPro:LipOase_C	InterPro:LipOase_CS	InterPro:LipOase_C_sf	InterPro:LipOase_Fe_BS
PFAM:PF00305	PRINTS:PR00087	ScanProsite:PS00081	ScanProsite:PS00711	PFscan:PS51393	PANTHER:PTHR11771
PANTHER:PTHR11771:SF89	SUPFAM:SSF48484	UniParc:UPI0004EEFD47	SEG:seg	:	:

Description

BnaA07g24880DBnaA07g24880D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F364]

Coordinates

chrLK031978:+:503491..505217

Molecular Weight (calculated)

44473.6 Da

IEP (calculated)

5.286

GRAVY (calculated)

-0.456

Length

387 amino acids

Sequence
(BLAST)

001: MNTYQCPQWR QLFTPGYDAT SCWLWSLAKT HAITHDAGYH QLISHWLRTH CCMEPYIIAA NRQLSAMHPI YRLLHPHFRY TMEINARGRQ SLVNAGGIIE
101: SCFWPGKYSL ELSSDVYDKQ WRFDREGLPA DLISRGLAVE DETAEYGVRL TIPDYPFAND GLMLWDALKE WITDYVNHYY PDAEQVMLDE ELQGWWSEVR
201: NIGHGDKKNE PWWPVLKTQD DLIEVVTTIA WVASGHHAAV NFGQYGYGGY FPNRPTTSRI KMPVEEPTEE ELKEFYKDPE KTMLKTFPSK KQATKLMLTL
301: DLLSTHSPDE EYLGENAEAS WVHEPVIYAA YERFKGKLQY LEGVIDERNV DVALKNRAGA GVVKYELLKP ISEPGLTGMG VPNSVSI

Best Arabidopsis Sequence Match ( AT1G17420.1 )
(BLAST)

001: MALAKELMGY PLITERSSLV SSASHFKKRT QSTQFSINPF DRRPRKTKSG VVAAISEDLV KTLRFSTTTG DRKSEEEEKA AVKFKVRAVV TVRNKNKEDL
101: KETLVKHLDA FADKIGRNIV LELISTQLDP KTKLPKKSNA AVLKDWSKKS KTKAERVHYT AEFTVDAAFG SPGAITVMNK HQKEFFLESI TIEGFALGPV
201: HFPCNSWVQS QKDHPDKRIF FTNQPYLPNE TPSGLRVLRE KELKNLRGDG SGVRKLSDRI YDFDVYNDLG NPDKSSELSR PKLGGKEVPY PRRCRTGRQS
301: TVSDKDAESR VEKPLPMYVP RDEQFEESKQ DTFAAGRLKA VLHHLIPSLK ASIVAEDFAD FGEIDRLYKE GLLLKLGFQD DIFKKFPLPK VVVDTLQEST
401: KGLLKYDTPK ILSKDKNAWL RDDEFARQAI AGINPVNIER VKTFPPVSNL DPKIYGPQHS ALTDDHIIGH LDGFSVQQAL EENRLYMLDY HDIFLPFLDR
501: INALDGRKAY ATRTIFFLTR LGTLKPVAIE LSLPPHGPKH RSKRVLTPPV DATSNWMWQL AKAHVSSNDA GVHQLVNHWL RTHACLEPFI LAAHRQLSAM
601: HPIFKLLDPH MRYTLEINAL ARQSLISADG VIEGGFTAGA YGMEMSAAAY KSSWRFDMEG LPADLIRRGM AIPDATQPHG LKLLIEDYPY ANDGLLLWSA
701: IQTWVRTYVE RYYPNPNLIK TDSELQSWYS ESINVGHADL RDADWWPELS TVDDLVSILT TLIWLASAQH AALNFGQYPY GGYVPNRPPL MRRLIPDESD
801: PEYASFISHP EKYYFSSMPS LAQTSKFMAV VDTLSTHSPD EEYIGERQQP SIWTGDAEIV EAFYGFAAEI GRIEKEIEKR NADPDRRNRC GAGVLPYELL
901: VPSSEPGVTC RGVPNSVSI

Arabidopsis Description

LOX3Lipoxygenase 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LNR3]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.