CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, plastid

Predictor Summary:

nucleus 1
plastid 5
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG90357
KRH08499
KRH33614
KRH70165

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G45140.1	KRH08499	AT5G18110.1	11117257
AT3G45140.1	KRH70165	AT5G18110.1	11117257
AT3G45140.1	KRG90357	AT5G35620.1	11117257
AT3G45140.1	KRH33614	AT5G35620.1	11117257

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG89888	Soybean	nucleus	88.6	84.39
KRG89883	Soybean	cytosol, plastid	78.49	78.58
KRH17965	Soybean	plastid	76.98	72.11
KRH18682	Soybean	cytosol, mitochondrion	73.02	68.94
Solyc01g009680.2.1	Tomato	plastid	34.88	67.72
Os12t0559934-00	Rice	cytosol	14.77	65.13
VIT_06s0004g01500.t01	Wine grape	cytosol	58.02	63.08
PGSC0003DMT400020118	Potato	cytosol	50.35	62.48
VIT_06s0004g01480.t01	Wine grape	cytosol	56.86	61.66
CDY72550	Canola	cytosol	22.56	60.44
CDY61034	Canola	cytosol	30.93	59.51
CDY07409	Canola	cytosol	26.4	58.66
KRH29668	Soybean	nucleus	61.51	58.39
KRH29669	Soybean	plastid	61.16	58.38
HORVU3Hr1G047210.1	Barley	cytosol	14.65	58.06
VIT_06s0004g01460.t01	Wine grape	plastid	40.23	57.86
VIT_06s0004g01510.t01	Wine grape	plastid	60.12	57.38
KRH24671	Soybean	cytosol, plastid	60.81	57.22
VIT_06s0004g01470.t01	Wine grape	cytosol	59.65	56.81
Solyc01g006540.2.1	Tomato	plastid	58.72	56.36
Solyc01g006560.2.1	Tomato	plastid	58.95	56.21
PGSC0003DMT400081909	Potato	plastid	58.49	55.95
GSMUA_Achr9P12470_001	Banana	plastid	54.65	55.75
OQU80925	Sorghum	cytosol	55.0	54.68
VIT_06s0004g01450.t01	Wine grape	cytosol, extracellular	54.42	54.48
Solyc12g011040.1.1	Tomato	nucleus, plastid	55.81	53.81
CDY70843	Canola	cytosol	7.79	53.17
CDY61881	Canola	cytosol	21.74	52.68
GSMUA_Achr3P11780_001	Banana	plastid	51.74	52.6
HORVU7Hr1G050680.1	Barley	peroxisome	41.16	51.75
TraesCS4D01G347300.1	Wheat	cytosol	52.33	50.85
KXG29701	Sorghum	plastid	54.07	50.71
HORVU6Hr1G033600.1	Barley	plastid	52.79	50.67
Zm00001d053675_P001	Maize	plastid	53.14	50.5
TraesCS7B01G145200.1	Wheat	plastid	54.42	50.43
TraesCS7D01G244800.1	Wheat	plastid	54.53	50.32
TraesCS6B01G193400.1	Wheat	plastid	52.56	50.17
TraesCS6D01G154600.1	Wheat	plastid	52.56	50.17
Os08t0509100-01	Rice	nucleus	54.77	50.05
TraesCS7A01G246200.1	Wheat	plastid	54.07	49.95
Os08t0508800-01	Rice	nucleus, plasma membrane	53.6	49.89
TraesCS6A01G166000.1	Wheat	golgi	52.21	49.83
CDY04196	Canola	plastid	51.28	49.61
TraesCS7D01G029400.1	Wheat	cytosol	15.23	49.43
Zm00001d015852_P004	Maize	plastid	52.33	49.4
CDX91565	Canola	plastid	51.63	49.33
Zm00001d031449_P001	Maize	mitochondrion	54.65	49.16
CDX67920	Canola	plastid	51.63	49.12
Bra003526.1-P	Field mustard	plastid	51.51	49.0
KRH35534	Soybean	cytosol	25.47	48.88
Bra004059.1-P	Field mustard	plastid	49.19	48.85
Bra004057.1-P	Field mustard	cytosol	50.58	48.82
CDX79416	Canola	plastid	51.28	48.78
Os02t0194700-01	Rice	plasma membrane	52.21	48.49
TraesCS7A01G034900.1	Wheat	mitochondrion	16.51	48.46
AT3G45140.1	Thale cress	plastid	50.35	48.33
Bra004060.1-P	Field mustard	plastid	50.47	48.28
CDY61036	Canola	plastid	49.88	48.26
TraesCS6B01G014400.1	Wheat	cytosol	33.6	48.09
CDY16339	Canola	plastid	42.33	47.83
Bra022535.1-P	Field mustard	plastid	45.0	47.72
TraesCS5B01G006500.1	Wheat	plastid	49.07	45.47
TraesCS5D01G013400.1	Wheat	plastid	49.07	45.47
TraesCS5A01G007900.1	Wheat	plastid	48.84	45.26
HORVU5Hr1G001180.1	Barley	plastid	48.95	45.22
HORVU7Hr1G006320.4	Barley	plastid	48.02	44.55
KRH42646	Soybean	plastid	47.21	44.08
KRH47615	Soybean	nucleus	47.44	44.01
KRH10882	Soybean	cytosol	22.21	44.01
KRH06197	Soybean	nucleus	47.09	43.93
HORVU6Hr1G000510.1	Barley	plastid	47.56	43.88
TraesCS6D01G010100.1	Wheat	plastid	47.91	43.88
CDY61880	Canola	plastid	28.02	43.74
KRH68548	Soybean	cytosol	43.49	43.59
Os12t0559200-01	Rice	plastid	46.63	43.49
KRH69027	Soybean	plastid	45.12	43.06
TraesCS5D01G041100.1	Wheat	plastid	47.21	42.96
KRH33939	Soybean	cytosol, endoplasmic reticulum	43.14	42.89
KRG97300	Soybean	plastid	44.77	42.83
KRH23268	Soybean	endoplasmic reticulum	42.09	42.44
KRG91271	Soybean	cytosol	42.33	42.42
Os12t0560200-00	Rice	cytosol	4.88	42.42
TraesCS5B01G033000.1	Wheat	plastid	46.63	42.21
KRH44094	Soybean	endoplasmic reticulum	42.44	42.1
KRH10053	Soybean	endoplasmic reticulum	41.74	42.09
KRH10051	Soybean	endoplasmic reticulum, nucleus	41.86	42.06
KRH47066	Soybean	endoplasmic reticulum, nucleus	41.98	42.03
KRH16725	Soybean	cytosol	11.28	41.99
KRH47069	Soybean	endoplasmic reticulum	22.21	41.98
KRH62403	Soybean	cytosol, endoplasmic reticulum	11.05	41.85
KRH23266	Soybean	cytosol	40.12	41.77
KRH44093	Soybean	endoplasmic reticulum	41.05	41.73
KRH44092	Soybean	nucleus	41.51	41.66
KRH44090	Soybean	endoplasmic reticulum	41.51	41.51
Bra004058.1-P	Field mustard	plastid	51.05	41.49
KRH57987	Soybean	cytosol	12.44	41.47
KRH47067	Soybean	endoplasmic reticulum	41.63	41.44
KRH44095	Soybean	endoplasmic reticulum	41.63	41.34
KRH44097	Soybean	cytosol, endoplasmic reticulum	41.63	41.24
KRH47525	Soybean	endoplasmic reticulum	41.63	41.24
KRH23269	Soybean	endoplasmic reticulum	39.42	41.24
KRH10050	Soybean	endoplasmic reticulum	40.81	40.96
KRH62399	Soybean	cytosol, endoplasmic reticulum	11.16	40.68
KRH23265	Soybean	endoplasmic reticulum, nucleus	40.58	40.3
CDY07407	Canola	cytosol, plastid	51.4	40.29
KRH47522	Soybean	endoplasmic reticulum, nucleus	40.47	40.23
KRH21441	Soybean	cytosol	42.09	39.78
KRH50048	Soybean	cytosol	41.86	39.56
CDY07408	Canola	plastid	20.81	39.08
CDY70245	Canola	plastid	20.58	38.65
KRH13357	Soybean	endoplasmic reticulum	10.7	38.02
CDY70606	Canola	plastid	17.44	37.97
TraesCS5A01G032800.1	Wheat	mitochondrion	37.79	37.83
KRH47064	Soybean	endoplasmic reticulum	24.88	37.54
CDY61882	Canola	plastid	16.51	36.69
KRH07345	Soybean	cytosol, plastid	36.28	36.24
KRG88464	Soybean	cytosol	19.19	36.18
KRH66214	Soybean	cytosol	36.28	36.03
KRH30640	Soybean	cytosol	7.79	35.83

Protein Annotations

Gene3D:1.20.245.10	EntrezGene:100782277	MapMan:11.7.1.2	Gene3D:2.60.60.20	Gene3D:3.10.450.60	Gene3D:4.10.372.10
Gene3D:4.10.375.10	EMBL:ACUP02012304	EnsemblPlantsGene:GLYMA_20G054100	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005515	GO:GO:0006629	GO:GO:0006633	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016491	GO:GO:0016702	GO:GO:0031408	GO:GO:0046872	GO:GO:0051213
GO:GO:0055114	UniProt:I1NE44	InterPro:IPR001024	InterPro:IPR013819	InterPro:IPR027433	EnsemblPlants:KRG89889
ProteinID:KRG89889	ProteinID:KRG89889.1	InterPro:LipOase	InterPro:LipOase_C	InterPro:LipOase_CS	InterPro:LipOase_C_sf
InterPro:LipOase_plant	InterPro:Lipoxygenase_dom_3	PFAM:PF00305	PFAM:PF01477	InterPro:PLAT/LH2_dom	InterPro:PLAT/LH2_dom_sf
PRINTS:PR00087	PRINTS:PR00468	ScanProsite:PS00081	PFscan:PS50095	PFscan:PS51393	PANTHER:PTHR11771
PANTHER:PTHR11771:SF65	SMART:SM00308	SUPFAM:SSF48484	SUPFAM:SSF49723	UniParc:UPI0002951311	SEG:seg

Description

hypothetical protein

Coordinates

chr20:+:12486154..12492509

Molecular Weight (calculated)

97883.1 Da

IEP (calculated)

5.989

GRAVY (calculated)

-0.462

Length

860 amino acids

Sequence
(BLAST)

001: MWCVPQCLKP GMATSSGKTN TKSQNVNVNV KAIVTIEQSN GGLLLNLINS AVDGIKELAG KTLVLELVSD ELDPKTNLER KTIKGNARKT EEKENEVLYE
101: ATFELAAEFG KVGAVLVENE QHNEIFLKSV VFDGFPDGPV HLTCDSWVQP MHDNPVKRVF FTDKSYLCSQ TPSGLRRLRE EELKLLRGNG EGERKSSDRI
201: YDYGVYNDLG DPGSNIDLKR PILGGSKQYP YPRRCRTGRE HSDSDPSYEK RSSSFYVPRD ETFSEVKQSQ FTKTTISSGV SAVLESLDAI LTDQNLGFRS
301: FEDIDTIYKE GFKLSPLKEN GLNFLQRVIP RLIKAANDSQ NLLRFDTPET VKRDRFFWFS DEEFARETLA GVNPYSIQLV KEWPLRSKLE SQIYGPPESA
401: ITREVIQPHI IGYGTIEEAI KEKKLYMLDY HDLLLPYVSK VREIKDTTLY GSRTLFFLTE QGTLKPLAIE LTRPPMDGKP QWKQVFTPAS HSTNLWLWRL
501: AKAHVLAHDA GVHELINHWL GTHAVMEPFV VATNRQLSSM HPIYKLLHPH LRYTLAINSL AREILINANG IIEKSFSPNK YSMELSSVAY DQLWQFDLQA
601: LPNDLIYRGM AVVDPNAPHG LKLTIEDYPF ANDGLLIWDS IKQWVTDYVN HYYPTPSIIE SDQELQAWWT EIRTVGHGDK SEEPWWPNLK TPKDLIDTIT
701: TITWTASAHH AAVNFTQYTY GGYFPNRPNI VRTKIPTEDP SKEEWETFLN NPEQTLLECF PSQIQATTMM VVFNILSYHS PDEEYIGQYL KPSWTEDPTV
801: KAAYEKFNGR LKEIEGIIDS RNADCNMKNR HGVGVVPYEQ MKPFSGPGIT GKGIPYSVSI

Best Arabidopsis Sequence Match ( AT1G17420.1 )
(BLAST)

001: MALAKELMGY PLITERSSLV SSASHFKKRT QSTQFSINPF DRRPRKTKSG VVAAISEDLV KTLRFSTTTG DRKSEEEEKA AVKFKVRAVV TVRNKNKEDL
101: KETLVKHLDA FADKIGRNIV LELISTQLDP KTKLPKKSNA AVLKDWSKKS KTKAERVHYT AEFTVDAAFG SPGAITVMNK HQKEFFLESI TIEGFALGPV
201: HFPCNSWVQS QKDHPDKRIF FTNQPYLPNE TPSGLRVLRE KELKNLRGDG SGVRKLSDRI YDFDVYNDLG NPDKSSELSR PKLGGKEVPY PRRCRTGRQS
301: TVSDKDAESR VEKPLPMYVP RDEQFEESKQ DTFAAGRLKA VLHHLIPSLK ASIVAEDFAD FGEIDRLYKE GLLLKLGFQD DIFKKFPLPK VVVDTLQEST
401: KGLLKYDTPK ILSKDKNAWL RDDEFARQAI AGINPVNIER VKTFPPVSNL DPKIYGPQHS ALTDDHIIGH LDGFSVQQAL EENRLYMLDY HDIFLPFLDR
501: INALDGRKAY ATRTIFFLTR LGTLKPVAIE LSLPPHGPKH RSKRVLTPPV DATSNWMWQL AKAHVSSNDA GVHQLVNHWL RTHACLEPFI LAAHRQLSAM
601: HPIFKLLDPH MRYTLEINAL ARQSLISADG VIEGGFTAGA YGMEMSAAAY KSSWRFDMEG LPADLIRRGM AIPDATQPHG LKLLIEDYPY ANDGLLLWSA
701: IQTWVRTYVE RYYPNPNLIK TDSELQSWYS ESINVGHADL RDADWWPELS TVDDLVSILT TLIWLASAQH AALNFGQYPY GGYVPNRPPL MRRLIPDESD
801: PEYASFISHP EKYYFSSMPS LAQTSKFMAV VDTLSTHSPD EEYIGERQQP SIWTGDAEIV EAFYGFAAEI GRIEKEIEKR NADPDRRNRC GAGVLPYELL
901: VPSSEPGVTC RGVPNSVSI

Arabidopsis Description

LOX3Lipoxygenase 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LNR3]
SUBAcon: [cytosol,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.