Factsheet for VIT_06s0004g01450.t01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, cytosol

Predictor Summary:

cytosol 4
plastid 1
extracellular 3
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	cytosol
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	cytosol
Predotar:	secretory
PProwler:	secretory
WoLF PSORT:	extracellular
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_06s0004g01460.t01	Wine grape	plastid	59.02	84.78
VIT_06s0004g01500.t01	Wine grape	cytosol	66.94	72.69
VIT_06s0004g01480.t01	Wine grape	cytosol	66.47	72.0
Os12t0559934-00	Rice	cytosol	15.95	70.26
Solyc01g009680.2.1	Tomato	plastid	35.62	69.07
HORVU3Hr1G047210.1	Barley	cytosol	16.18	64.06
VIT_06s0004g01470.t01	Wine grape	cytosol	67.29	64.01
VIT_13s0064g01500.t01	Wine grape	cytosol	18.63	64.0
VIT_13s0064g01490.t01	Wine grape	cytosol	29.22	62.91
PGSC0003DMT400020118	Potato	cytosol	49.13	60.89
VIT_06s0004g01510.t01	Wine grape	plastid	62.28	59.38
VIT_13s0064g01480.t01	Wine grape	plastid	59.37	56.48
KRH29669	Soybean	plastid	57.39	54.72
KRG89883	Soybean	cytosol, plastid	54.6	54.6
KRG89889	Soybean	cytosol, plastid	54.48	54.42
Solyc01g006540.2.1	Tomato	plastid	56.58	54.24
KRH29668	Soybean	nucleus	57.16	54.19
PGSC0003DMT400081909	Potato	plastid	56.58	54.06
Solyc01g006560.2.1	Tomato	plastid	56.69	53.99
Solyc12g011040.1.1	Tomato	nucleus, plastid	56.0	53.92
KRH24671	Soybean	cytosol, plastid	57.16	53.72
KRG89888	Soybean	nucleus	55.65	52.93
GSMUA_Achr3P11780_001	Banana	plastid	52.04	52.84
KRH17965	Soybean	plastid	55.41	51.85
HORVU7Hr1G050680.1	Barley	peroxisome	41.21	51.75
OQU80925	Sorghum	cytosol	51.8	51.45
KRH18682	Soybean	cytosol, mitochondrion	54.25	51.15
GSMUA_Achr9P12470_001	Banana	plastid	50.06	51.01
VIT_00s0265g00170.t01	Wine grape	cytosol	29.69	50.49
TraesCS6B01G014400.1	Wheat	cytosol	35.04	50.08
TraesCS4D01G347300.1	Wheat	cytosol	49.83	48.36
TraesCS7D01G029400.1	Wheat	cytosol	14.9	48.3
TraesCS7A01G034900.1	Wheat	mitochondrion	16.41	48.12
Os08t0508800-01	Rice	nucleus, plasma membrane	51.57	47.94
Zm00001d053675_P001	Maize	plastid	50.29	47.73
HORVU6Hr1G033600.1	Barley	plastid	49.24	47.21
Os08t0509100-01	Rice	nucleus	51.57	47.08
TraesCS7D01G244800.1	Wheat	plastid	50.76	46.78
TraesCS7B01G145200.1	Wheat	plastid	50.52	46.77
KXG29701	Sorghum	plastid	49.83	46.67
TraesCS6B01G193400.1	Wheat	plastid	48.89	46.61
TraesCS7A01G246200.1	Wheat	plastid	50.41	46.51
Os02t0194700-01	Rice	plasma membrane	50.06	46.44
Zm00001d015852_P004	Maize	plastid	49.24	46.43
TraesCS6D01G154600.1	Wheat	plastid	48.43	46.17
TraesCS6A01G166000.1	Wheat	golgi	48.43	46.17
Zm00001d031449_P001	Maize	mitochondrion	51.34	46.13
HORVU5Hr1G001180.1	Barley	plastid	49.94	46.08
TraesCS5A01G007900.1	Wheat	plastid	49.71	46.01
TraesCS5D01G013400.1	Wheat	plastid	49.71	46.01
TraesCS5B01G006500.1	Wheat	plastid	49.48	45.8
HORVU6Hr1G000510.1	Barley	plastid	48.2	44.42
Os12t0559200-01	Rice	plastid	47.38	44.14
TraesCS5D01G041100.1	Wheat	plastid	48.54	44.13
HORVU7Hr1G006320.4	Barley	plastid	47.26	43.8
TraesCS5B01G033000.1	Wheat	plastid	48.43	43.79
TraesCS6D01G010100.1	Wheat	plastid	47.15	43.13
Os12t0560200-00	Rice	cytosol	4.89	42.42
VIT_01s0010g02750.t01	Wine grape	plastid	45.4	42.39
VIT_14s0128g00780.t01	Wine grape	cytosol	41.09	41.09
VIT_14s0128g00790.t01	Wine grape	cytosol	40.86	40.39
VIT_05s0020g03170.t01	Wine grape	cytosol	40.98	40.18
VIT_06s0004g01580.t01	Wine grape	cytosol	15.48	39.7
VIT_09s0002g01080.t01	Wine grape	cytosol	42.61	39.48
TraesCS5A01G032800.1	Wheat	mitochondrion	39.0	39.0
VIT_07s0141g00340.t01	Wine grape	cytosol, plastid	28.29	38.09
VIT_07s0289g00010.t01	Wine grape	cytosol	19.79	35.64

Protein Annotations

Gene3D:1.20.245.10	EntrezGene:100241684	wikigene:100241684	MapMan:11.7.1.2	Gene3D:2.60.60.20	Gene3D:3.10.450.60
Gene3D:4.10.372.10	Gene3D:4.10.375.10	ProteinID:CCB43751	ProteinID:CCB43751.1	ncoils:Coil	UniProt:F6GUD0
EMBL:FN594951	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0006629
GO:GO:0006633	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016491
GO:GO:0016702	GO:GO:0031408	GO:GO:0046872	GO:GO:0051213	GO:GO:0055114	InterPro:IPR001024
InterPro:IPR013819	InterPro:IPR027433	EntrezGene:LOC100241684	wikigene:LOC100241684	InterPro:LipOase	InterPro:LipOase_C
InterPro:LipOase_CS	InterPro:LipOase_C_sf	InterPro:LipOase_Fe_BS	InterPro:LipOase_plant	InterPro:Lipoxygenase_dom_3	PFAM:PF00305
PFAM:PF01477	InterPro:PLAT/LH2_dom	InterPro:PLAT/LH2_dom_sf	PRINTS:PR00087	PRINTS:PR00468	ScanProsite:PS00081
ScanProsite:PS00711	PFscan:PS50095	PFscan:PS51393	PANTHER:PTHR11771	PANTHER:PTHR11771:SF89	SMART:SM00308
SUPFAM:SSF48484	SUPFAM:SSF49723	SignalP:SignalP-noTM	UniParc:UPI000210894F	ArrayExpress:VIT_06s0004g01450	EnsemblPlantsGene:VIT_06s0004g01450
EnsemblPlants:VIT_06s0004g01450.t01	RefSeq:XP_002283166	RefSeq:XP_002283166.2	SEG:seg	:	:

Description

Lipoxygenase [Source:UniProtKB/TrEMBL;Acc:F6GUD0]

Coordinates

chr6:+:1774659..1783726

Molecular Weight (calculated)

98316.6 Da

IEP (calculated)

5.563

GRAVY (calculated)

-0.477

Length

859 amino acids

Sequence
(BLAST)

001: MKSPNLLGGS LLLELVSAEL DPQTGSQKKP INANAHQVLP KDGPEGGPKD GPKNGPKDAI FESKFVIPGD FGEIGAVLVE NEHSSEIYLQ HIILDGLPNG
101: PIRFHCGSWI EPKSDNSRKR LFFTNKLYLP SQTPEGLKNL REKELDSLRG NDEGEHKTSN RIYDYDVYND LGDPNNPKLA RPVLGGSKQY PYPRRCGTGH
201: LQYKTDPCSK MSNSFYVPRD EKFSGVKEKS FRGKTIECGW HAAIAHLDNP TKSEFLYLSD IFKLYYEGIN LSSPVNRGFW QRVWNVLLNV KDDFLKFKPP
301: ALFLKDKFSW LWDEEFSRQT LAGINPCSIK LVTEWPLKST LDPDVYGPPE SAITTELVER EIRAFMTIDE ALEQKKLFII DYHDLLLPYV SKVRQIEGTT
401: LYGSRALFFL TPDGTLKPLA IELTRPPIEG KPQWKQVFTP TSESTGRWLW RLAKVHFLAH DSGYHQLVSH WLRTHCVTEP YIIATNRQLS VMHPIYRLLH
501: PHFRYTMHIN ARARESLINA EGIIESSFSP GKYSVELSSV AYDQQWRFDR EALPADLINR GIAVEDPDAP HGLKLLIEDY PFANDGLILW DALKQWVADY
601: VNYYYKDASM VQSDPELQAW WTEIRTKGHE DKKDEPWWPN LQTPDDLIGI ITTITWVTSG HHSAVNFGQY AFAGYFPNRP SIARTNMPCE EPTEEGWQRF
701: LDNPNSELLA CFPSKLQATR IMATLDLLSE HSSDEEYIGK DRKLTWDEEP VIKEAFNRFS AKLEELERTI DDRNKDNSLK NRNGAGVVPY ELLKGKAPTQ
801: YMPQIFQSLD FFVPIIITDI VIDKEEVKEL KCFEELSFFD ILACDPKCEL VLELASTIN

Best Arabidopsis Sequence Match ( AT1G17420.1 )
(BLAST)

001: MALAKELMGY PLITERSSLV SSASHFKKRT QSTQFSINPF DRRPRKTKSG VVAAISEDLV KTLRFSTTTG DRKSEEEEKA AVKFKVRAVV TVRNKNKEDL
101: KETLVKHLDA FADKIGRNIV LELISTQLDP KTKLPKKSNA AVLKDWSKKS KTKAERVHYT AEFTVDAAFG SPGAITVMNK HQKEFFLESI TIEGFALGPV
201: HFPCNSWVQS QKDHPDKRIF FTNQPYLPNE TPSGLRVLRE KELKNLRGDG SGVRKLSDRI YDFDVYNDLG NPDKSSELSR PKLGGKEVPY PRRCRTGRQS
301: TVSDKDAESR VEKPLPMYVP RDEQFEESKQ DTFAAGRLKA VLHHLIPSLK ASIVAEDFAD FGEIDRLYKE GLLLKLGFQD DIFKKFPLPK VVVDTLQEST
401: KGLLKYDTPK ILSKDKNAWL RDDEFARQAI AGINPVNIER VKTFPPVSNL DPKIYGPQHS ALTDDHIIGH LDGFSVQQAL EENRLYMLDY HDIFLPFLDR
501: INALDGRKAY ATRTIFFLTR LGTLKPVAIE LSLPPHGPKH RSKRVLTPPV DATSNWMWQL AKAHVSSNDA GVHQLVNHWL RTHACLEPFI LAAHRQLSAM
601: HPIFKLLDPH MRYTLEINAL ARQSLISADG VIEGGFTAGA YGMEMSAAAY KSSWRFDMEG LPADLIRRGM AIPDATQPHG LKLLIEDYPY ANDGLLLWSA
701: IQTWVRTYVE RYYPNPNLIK TDSELQSWYS ESINVGHADL RDADWWPELS TVDDLVSILT TLIWLASAQH AALNFGQYPY GGYVPNRPPL MRRLIPDESD
801: PEYASFISHP EKYYFSSMPS LAQTSKFMAV VDTLSTHSPD EEYIGERQQP SIWTGDAEIV EAFYGFAAEI GRIEKEIEKR NADPDRRNRC GAGVLPYELL
901: VPSSEPGVTC RGVPNSVSI

Arabidopsis Description

LOX3Lipoxygenase 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LNR3]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.