Factsheet for VIT_01s0010g02750.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400034472	Potato	cytosol	39.24	80.76
KRH42646	Soybean	plastid	74.89	74.81
Solyc05g014790.2.1	Tomato	plastid	73.37	74.09
PGSC0003DMT400045047	Potato	cytosol, plastid	73.15	73.96
GSMUA_Achr6P28450_001	Banana	plastid	64.78	68.51
CDY51606	Canola	plastid	64.57	65.06
CDY12655	Canola	plastid	64.24	64.73
Bra033991.1-P	Field mustard	plastid	64.13	64.62
Bra004081.1-P	Field mustard	plastid	64.35	64.49
CDY07417	Canola	plastid	64.35	64.49
AT1G67560.1	Thale cress	plastid	63.7	63.9
VIT_00s0265g00170.t01	Wine grape	cytosol	32.28	58.81
VIT_13s0064g01490.t01	Wine grape	cytosol	23.91	55.14
VIT_13s0064g01500.t01	Wine grape	cytosol	14.57	53.6
CDY28879	Canola	cytosol, endoplasmic reticulum, plastid	64.02	52.59
VIT_06s0004g01480.t01	Wine grape	cytosol	44.89	52.08
VIT_06s0004g01500.t01	Wine grape	cytosol	44.57	51.83
VIT_09s0002g01080.t01	Wine grape	cytosol	52.17	51.78
VIT_06s0004g01460.t01	Wine grape	plastid	32.61	50.17
VIT_13s0064g01480.t01	Wine grape	plastid	48.48	49.39
VIT_06s0004g01510.t01	Wine grape	plastid	46.09	47.06
VIT_06s0004g01470.t01	Wine grape	cytosol	45.54	46.4
VIT_06s0004g01450.t01	Wine grape	cytosol, extracellular	42.39	45.4
VIT_14s0128g00780.t01	Wine grape	cytosol	41.74	44.7
VIT_14s0128g00790.t01	Wine grape	cytosol	41.3	43.73
VIT_06s0004g01580.t01	Wine grape	cytosol	15.87	43.58
VIT_05s0020g03170.t01	Wine grape	cytosol	38.15	40.07
VIT_07s0141g00340.t01	Wine grape	cytosol, plastid	27.28	39.34
VIT_07s0289g00010.t01	Wine grape	cytosol	18.91	36.48

Protein Annotations

Gene3D:1.20.245.10	EntrezGene:100244202	wikigene:100244202	MapMan:11.7.1.2	Gene3D:2.60.60.20	Gene3D:3.10.450.60
Gene3D:4.10.372.10	Gene3D:4.10.375.10	ProteinID:CBI27576	ProteinID:CBI27576.3	UniProt:D7TAQ3	EMBL:FN595754
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005886	GO:GO:0006629	GO:GO:0006633	GO:GO:0006950
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009611
GO:GO:0009695	GO:GO:0009987	GO:GO:0016020	GO:GO:0016165	GO:GO:0016491	GO:GO:0016702
GO:GO:0031408	GO:GO:0034440	GO:GO:0046872	GO:GO:0051213	GO:GO:0055114	InterPro:IPR001024
InterPro:IPR013819	InterPro:IPR027433	EntrezGene:LOC100244202	wikigene:LOC100244202	InterPro:LipOase	InterPro:LipOase_C
InterPro:LipOase_CS	InterPro:LipOase_C_sf	InterPro:LipOase_Fe_BS	InterPro:LipOase_plant	InterPro:Lipoxygenase_dom_3	PFAM:PF00305
PFAM:PF01477	InterPro:PLAT/LH2_dom	InterPro:PLAT/LH2_dom_sf	PRINTS:PR00087	PRINTS:PR00468	ScanProsite:PS00081
ScanProsite:PS00711	PFscan:PS50095	PFscan:PS51393	PANTHER:PTHR11771	PANTHER:PTHR11771:SF60	SMART:SM00308
SUPFAM:SSF48484	SUPFAM:SSF49723	UniParc:UPI00015CB63E	ArrayExpress:VIT_01s0010g02750	EnsemblPlantsGene:VIT_01s0010g02750	EnsemblPlants:VIT_01s0010g02750.t01
unigene:Vvi.21512	RefSeq:XP_002265505	RefSeq:XP_002265505.1	SEG:seg	:	:

Description

Lipoxygenase [Source:UniProtKB/TrEMBL;Acc:D7TAQ3]

Coordinates

chr1:-:19772899..19777638

Molecular Weight (calculated)

103525.0 Da

IEP (calculated)

7.494

GRAVY (calculated)

-0.409

Length

920 amino acids

Sequence
(BLAST)

001: MLGAQRIAPV NSGVVWRAPA QLESNGRARR SWVPGHRSPV AGARPIRAVI SSEDKTVEGG AKAVESKDGN VLLSSSSSSS AKGIDVRAVI TIRKKMKEKI
101: TEKIEDQWEG FMNGIGQGIS IQLVSEEIDP VTMSGKSVES FVRGWLPKPS NLPYIVEYAA DFTVPLDFGS PGAVLISNLH GKEFHLMEIV IHGFDEGPIF
201: FPANSWIHSR KDNPESRIIF RNQAYLPSQT PPGLKDLRRE DLLSLRGNRK GERKPHDRIY DYAPYNDLGN PDKSEDLARP VLAGEERPYP RRCRTGRPPT
301: RTDPLCESRS EKPHPVYVPR DETFEEIKQN TFSAGRLKAL LHNLIPSIAA TLSSSDIPFK CFSDIDKLYN DGVLLKDEED QKMSGNVFPS NMMKQVLSVG
401: QKLLKYEVPA IISRDRFAWL RDNEFARQTL AGVNPVNIEI LKGFPIVSKL DPAVYGPPES AITKELIQQE LSGITVEEAI EDKRLFILDY HDMLLPFIGK
501: MNTLPERQAY ASRTVFFYTR TGFLRPIAIE LSLPPTPSSP GKKRVYTHGH DATTHWIWKQ AKAHVCSNDA GVHQLVNHWL RTHACMEPYI IATHRQLSAM
601: HPINKLLRPH LRYTLEINAL ARQSLINGGG IIEACFSPGK YAMELSSAAY KSMWQFDMEA LPADLIRRGM AVEDPSMPCG VKLLIEDYPY AADGLLIWSA
701: IKEWVESYVD HFYSEPNTVT SDLELQAWWN EIKNEGHYDK RNESWWPKLN TKEHLSGILT TMIWIASGQH AAINFGQYPF GGYVPNRPTL MRKLIPHEDD
801: SAYEKFLLNP QSTFLSSLPT QLQATKVMAV QDTLSTHSPD EEYLGQTHHL HSHWIKDPEV LDMFKKFSAK LEEIEEIIKG RNKNIHLKNR NGAGIPPYEL
901: LLPSSGPGVT GRGIPNSISI

Best Arabidopsis Sequence Match ( AT1G67560.1 )
(BLAST)

001: MFVASPVKTN FNGVSLVKSP AFSALSCRKQ HRVPISRQVR AVISREEKAV DQEDGKKSTN KPLINSSQFP WQRSKYTGSK TVTAVVKIRK KIKEKLTERF
101: EHQLELFMKA IGQGMLIQLV SEEIDPETGK GRKSLESPVM GLPKAVKDPR YLVFTADFTV PINFGKPGAI LVTNLLSTEI CLSEIIIEDS TDTILFPANT
201: WIHSKNDNPQ ARIIFRSQPC LPSETPDGIK ELREKDLVSV RGDGKGERKP HERIYDYDVY NDLGDPRKTE RVRPVLGVPE TPYPRRCRTG RPLVSKDPPC
301: ESRGKEKEEF YVPRDEVFEE IKRDTFRAGR FKALFHNLVP SIAAALSNLD IPFTCFSDID NLYKSNIVLG HTEPKDTGLG GFIGGFMNGI LNVTETLLKY
401: DTPAVIKWDR FAWLRDNEFG RQALAGVNPV NIELLKELPI RSNLDPALYG PQESVLTEEI IAREVEHYGT TIEKALEEKR LFLVDYHDIL LPFVEKINSI
501: KEDPRKTYAS RTIFFYSKNG ALRPLAIELS LPPTAESENK FVYTHGHDAT THWIWKLAKA HVCSNDAGVH QLVNHWLRTH ASMEPYIIAT NRQLSTMHPV
601: YKLLHPHMRY TLEINARARK SLINGGGIIE SCFTPGKYAM ELSSAAYKSM WRFDMEGLPA DLVRRGMAEE DSSAECGVRL VIDDYPYAAD GLLIWKAIKD
701: LVESYVKHFY SDSKSITSDL ELQAWWDEIK NKGHYDKKDE PWWPKLNTTQ DLSQILTNMI WIASGQHAAI NFGQYPFGGY VPNRPTLLRK LIPQETDPDY
801: EMFMRNPQYS FLGSLPTQLQ ATKVMAVQET LSTHSPDEEY LIELREVQRH WFQDEQVVKY FNKFSEELVK IEKTINERNK DKKLKNRTGA GMPPYELLLP
901: TSPHGVTGRG IPNSISI

Arabidopsis Description

LOX6Lipoxygenase [Source:UniProtKB/TrEMBL;Acc:A0A178W1Z8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.